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Search of human proteins with 239742965
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo
sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754420 PREDICTED: hypothetical protein [Homo sapiens] 214 1e-56
gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo ... 214 1e-56
gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo ... 108 1e-24
gi|239755362 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.013
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 35 0.016
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 34 0.028
gi|89057646 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|89056946 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 33 0.048
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 33 0.048
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 33 0.048
gi|21328446 hormone-sensitive lipase [Homo sapiens] 33 0.063
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 33 0.063
gi|157694494 MYB binding protein 1a isoform 1 [Homo sapiens] 32 0.082
gi|157694492 MYB binding protein 1a isoform 2 [Homo sapiens] 32 0.082
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239754882 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|169172506 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|169173076 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|24497554 homeobox A13 [Homo sapiens] 31 0.18
gi|28269687 zygote arrest 1 [Homo sapiens] 31 0.18
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 31 0.24
gi|51173735 ras responsive element binding protein 1 isoform 2 [... 31 0.24
gi|51173737 ras responsive element binding protein 1 isoform 1 [... 31 0.24
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 31 0.24
gi|126507091 LATS, large tumor suppressor, homolog 2 [Homo sapiens] 31 0.24
gi|169165751 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|169166086 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|169165286 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
>gi|239754420 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 214 bits (545), Expect = 1e-56
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MCPQSSALGWSMGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPRE 60
MCPQSSALGWSMGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPRE
Sbjct: 1 MCPQSSALGWSMGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPRE 60
Query: 61 KLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQLKPISG 105
KLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQLKPISG
Sbjct: 61 KLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQLKPISG 105
>gi|239742965 PREDICTED: hypothetical protein XP_002342706 [Homo
sapiens]
Length = 105
Score = 214 bits (545), Expect = 1e-56
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MCPQSSALGWSMGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPRE 60
MCPQSSALGWSMGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPRE
Sbjct: 1 MCPQSSALGWSMGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPRE 60
Query: 61 KLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQLKPISG 105
KLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQLKPISG
Sbjct: 61 KLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQLKPISG 105
>gi|239747543 PREDICTED: hypothetical protein XP_002347646 [Homo
sapiens]
Length = 80
Score = 108 bits (269), Expect = 1e-24
Identities = 55/71 (77%), Positives = 58/71 (81%)
Query: 12 MGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71
MGLGA+EQGA LV EAR AQEPTE EAQAW AAGP+ CPAGRQLRP EKLSTAAAGPGA
Sbjct: 1 MGLGAVEQGATLVGEAREAQEPTEGAEAQAWWAAGPKLCPAGRQLRPGEKLSTAAAGPGA 60
Query: 72 TPLTARGGGAP 82
PLTA+ P
Sbjct: 61 KPLTAQSPVVP 71
>gi|239755362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 45.1 bits (105), Expect = 1e-05
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 6 SALGWSMGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTA 65
SA G MG G +EQ AALVR++ A QEP RG + P P G R+K
Sbjct: 19 SAFGRLMGPGVLEQRAALVRDSTAVQEPRRRGGSGMACCRSP-ALPHGEVAEARQKFQRE 77
Query: 66 AAGPGATPLTARGGGAPP 83
+GP G APP
Sbjct: 78 VSGPAVV-----GDPAPP 90
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.0 bits (79), Expect = 0.013
Identities = 21/48 (43%), Positives = 21/48 (43%)
Query: 39 AQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTARGGGAPPAAP 86
A A AAGPEP PAG A AGPG P G G P P
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKP 189
Score = 26.2 bits (56), Expect = 5.9
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 25/102 (24%)
Query: 15 GAMEQGAALVREAR--AAQEPTERGEAQAWRAAGPE---------------PCPAGRQLR 57
GA G A E AA EP G A+ GP+ P P +LR
Sbjct: 69 GAAGAGPAAPAEGAPGAAPEPPPAGRARPG-GGGPQRPGPPSPRRPLVPAGPAPPAAKLR 127
Query: 58 PREKLST-------AAAGPGATPLTARGGGAPPAAPTVFSVQ 92
P + S AAA A P A G A PA P + +
Sbjct: 128 PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAAR 169
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 34.7 bits (78), Expect = 0.016
Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 27 ARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPL-------TARGG 79
A A P E Q AA P P+ R P LST AGPG P G
Sbjct: 154 ASAPPRPAPGLEPQRGPAASPPQEPSSRPPSPPAGLSTEPAGPGTAPRPFLPGQPAEVDG 213
Query: 80 GAPPAAP 86
PPAAP
Sbjct: 214 NPPPAAP 220
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 33.9 bits (76), Expect = 0.028
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 20 GAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTARGG 79
G LV AAQ+P R A R A PEP G L A PG P AR G
Sbjct: 329 GIWLVEPGEAAQDPATRRTAPPRRTASPEPPAPGAPL---------PACPGRIPGAARFG 379
Query: 80 --GAPPAAPTVFSV 91
P +P V +V
Sbjct: 380 PRSCPLGSPAVLAV 393
>gi|89057646 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 27 ARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71
A A Q P G +A RAA P PA R R +L+T AGPGA
Sbjct: 127 AAAGQRPAP-GSRRARRAARAPPPPAAGSRRVRLQLATLEAGPGA 170
>gi|89056946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 27 ARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71
A A Q P G +A RAA P PA R R +L+T AGPGA
Sbjct: 127 AAAGQRPAP-GSRRARRAARAPPPPAAGSRRVRLQLATLEAGPGA 170
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 33.1 bits (74), Expect = 0.048
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 5 SSALGWSMGLGAMEQGAALVRE-ARAAQEPTERGEAQAW----RAAGPEPC--PAGRQLR 57
++AL + + +GAA E ARA EP EA R PEP PAG +
Sbjct: 15 ATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPE-E 73
Query: 58 PREKLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQ 99
P E G A P G G P AAP Q ++ +++
Sbjct: 74 PGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQE 115
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 33.1 bits (74), Expect = 0.048
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 5 SSALGWSMGLGAMEQGAALVRE-ARAAQEPTERGEAQAW----RAAGPEPC--PAGRQLR 57
++AL + + +GAA E ARA EP EA R PEP PAG +
Sbjct: 15 ATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPE-E 73
Query: 58 PREKLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQ 99
P E G A P G G P AAP Q ++ +++
Sbjct: 74 PGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQE 115
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 33.1 bits (74), Expect = 0.048
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 5 SSALGWSMGLGAMEQGAALVRE-ARAAQEPTERGEAQAW----RAAGPEPC--PAGRQLR 57
++AL + + +GAA E ARA EP EA R PEP PAG +
Sbjct: 15 ATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPE-E 73
Query: 58 PREKLSTAAAGPGATPLTARGGGAPPAAPTVFSVQIMKRKKQ 99
P E G A P G G P AAP Q ++ +++
Sbjct: 74 PGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQE 115
>gi|21328446 hormone-sensitive lipase [Homo sapiens]
Length = 1076
Score = 32.7 bits (73), Expect = 0.063
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 16 AMEQGAALVREARAAQEPTERGEAQAWRAAGP-EPCPAGRQLRPREKLSTAAAGPGATPL 74
A +QG L +E+ QEP R A GP EP PA ++ E A A PGA
Sbjct: 112 ASQQGPGLGKESITQQEPALRQRHVAQPGPGPGEPPPAQQE---AESTPAAQAKPGAK-- 166
Query: 75 TARGGGAPPAAPTVFSVQIMKRK--KQLKPISG 105
P+APT + Q + KQ P+ G
Sbjct: 167 ------REPSAPTESTSQETPEQSDKQTTPVQG 193
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 32.7 bits (73), Expect = 0.063
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 13 GLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGAT 72
G G EQG+ L R R P +G A A AAG P P GR S+A++ ++
Sbjct: 111 GAGRAEQGSTLRRRIREHLLPAVKGPAAASGAAGGTP-PGGRSPDSAPSSSSASSSLSSS 169
Query: 73 P 73
P
Sbjct: 170 P 170
>gi|157694494 MYB binding protein 1a isoform 1 [Homo sapiens]
Length = 1332
Score = 32.3 bits (72), Expect = 0.082
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 25 REARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTARGGGAPPA 84
R+ R +++ T + G +P GR+ R R K A G + GAP
Sbjct: 1181 RKKRKSEDGTPAEDGTPAATGGSQPPSMGRKKRNRTKAKVPAQANGTPTTKSPAPGAPTR 1240
Query: 85 APTVFSVQIMKRKKQLKP 102
+P+ + +KK KP
Sbjct: 1241 SPSTPAKSPKLQKKNQKP 1258
>gi|157694492 MYB binding protein 1a isoform 2 [Homo sapiens]
Length = 1328
Score = 32.3 bits (72), Expect = 0.082
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 25 REARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTARGGGAPPA 84
R+ R +++ T + G +P GR+ R R K A G + GAP
Sbjct: 1181 RKKRKSEDGTPAEDGTPAATGGSQPPSMGRKKRNRTKAKVPAQANGTPTTKSPAPGAPTR 1240
Query: 85 APTVFSVQIMKRKKQLKP 102
+P+ + +KK KP
Sbjct: 1241 SPSTPAKSPKLQKKNQKP 1258
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 18 EQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTAR 77
E+ AA A AA +P R G P L+PR + AA P PL AR
Sbjct: 62 ERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAA-PSPGPLPAR 120
Query: 78 GGGAPPAAPT 87
PP+ P+
Sbjct: 121 PSSPPPSPPS 130
>gi|239754882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 17 MEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTA 76
M Q + V+ A+ + ++ Q R+ C RPR + A GP L +
Sbjct: 3 MAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELAS 62
Query: 77 RGGG 80
RGGG
Sbjct: 63 RGGG 66
>gi|169172506 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 17 MEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTA 76
M Q + V+ A+ + ++ Q R+ C RPR + A GP L +
Sbjct: 3 MAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELAS 62
Query: 77 RGGG 80
RGGG
Sbjct: 63 RGGG 66
>gi|169173076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 17 MEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTA 76
M Q + V+ A+ + ++ Q R+ C RPR + A GP L +
Sbjct: 3 MAQAESSVKTQNASDQEGKKKVDQGLRSTATVSCVCSSTQRPRPAMCGAQRGPFQPELAS 62
Query: 77 RGGG 80
RGGG
Sbjct: 63 RGGG 66
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 31.2 bits (69), Expect = 0.18
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 5 SSALGWSMGLGAMEQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLST 64
SSA G + A AA A AA + G A GP A +Q P +
Sbjct: 106 SSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPA----GPAGAEAAKQCSPCSAAAQ 161
Query: 65 AAAGPGATPLTARGGGAPPAA 85
+++GP A P G G P A
Sbjct: 162 SSSGPAALPYGYFGSGYYPCA 182
>gi|28269687 zygote arrest 1 [Homo sapiens]
Length = 424
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 18 EQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTAR 77
E+G ++A + + GEAQA A E G +L PRE A G A R
Sbjct: 224 EEGEVWTKKAPRRPQSDDDGEAQAAVRASWEQPADGPELPPRE----AQEGEAAPRSALR 279
Query: 78 GGGAPPAA 85
G PP+A
Sbjct: 280 SPGQPPSA 287
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/88 (26%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 10 WSMGLGAMEQGAALVREARAAQEPTERG------EAQAWRAA-GPEPCPAGRQLR----P 58
W + G+ E A +A E E G W GP P +Q R P
Sbjct: 89 WGLNFGSKEDAAQFAAGMASALEALEGGGPPPPPALPTWSVPNGPSPEEVEQQKRQQPGP 148
Query: 59 REKLSTAAAGPGATPLTARGGGAPPAAP 86
E + + G P GG PP P
Sbjct: 149 SEHIERRVSNAGGPPAPPAGGPPPPPGP 176
>gi|51173735 ras responsive element binding protein 1 isoform 2 [Homo
sapiens]
Length = 1687
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 25 REARAAQEPT-ERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71
R+A QEP E+G+ + GP+P P + P + PGA
Sbjct: 1412 RKAHGRQEPKDEKGDGASTAEEGPQPAPEQEEKPPETPAEVVESAPGA 1459
>gi|51173737 ras responsive element binding protein 1 isoform 1 [Homo
sapiens]
Length = 1742
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 25 REARAAQEPT-ERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGA 71
R+A QEP E+G+ + GP+P P + P + PGA
Sbjct: 1467 RKAHGRQEPKDEKGDGASTAEEGPQPAPEQEEKPPETPAEVVESAPGA 1514
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 18 EQGAALVREARAAQEPTERGEAQAWRAAGPEPCPAGRQLRPREKLSTAAAGPGATPLTAR 77
+Q A + R+AQ ER +AQ RA E + R L K A AGPG P
Sbjct: 918 QQAAQALELQRSAQLVQERLKAQEHRAEMEEK-GSKRGLEAAGKAGLATAGPGLLPRKPP 976
Query: 78 GGGAPPA 84
G A PA
Sbjct: 977 GLAAGPA 983
>gi|126507091 LATS, large tumor suppressor, homolog 2 [Homo sapiens]
Length = 1088
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 44 AAGPEPCPAGRQLRPREKLSTAAAGPGATPLTARGGGAPPAAP 86
A P P PA L +E+ + A G GA PL GG P
Sbjct: 472 APAPAPAPAAEGLDAKEEHALALGGAGAFPLDVEYGGPDRRCP 514
>gi|169165751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 25 REARAAQEPTERGEAQAWRAAGPEPCP------AGRQLRPREKLSTAAAGPGATPLTARG 78
R R +PT + AW +GP+ G Q PR K P A +AR
Sbjct: 66 RVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGKRQPLRPAPRAARGSARP 125
Query: 79 GGAPPAAPTV 88
G PA P +
Sbjct: 126 LGFCPACPRI 135
>gi|169166086 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 25 REARAAQEPTERGEAQAWRAAGPEPCP------AGRQLRPREKLSTAAAGPGATPLTARG 78
R R +PT + AW +GP+ G Q PR K P A +AR
Sbjct: 66 RVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGKRQPLRPAPRAARGSARP 125
Query: 79 GGAPPAAPTV 88
G PA P +
Sbjct: 126 LGFCPACPRI 135
>gi|169165286 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 25 REARAAQEPTERGEAQAWRAAGPEPCP------AGRQLRPREKLSTAAAGPGATPLTARG 78
R R +PT + AW +GP+ G Q PR K P A +AR
Sbjct: 66 RVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGKRQPLRPAPRAARGSARP 125
Query: 79 GGAPPAAPTV 88
G PA P +
Sbjct: 126 LGFCPACPRI 135
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,984,797
Number of Sequences: 37866
Number of extensions: 271603
Number of successful extensions: 1891
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 1709
Number of HSP's gapped (non-prelim): 353
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.