Guide to the Human Genome
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Name: LOC100287612 Sequence: fasta or formatted (105aa) NCBI GI: 239742965
Description:

PREDICTED: hypothetical protein XP_002342706

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.0         20           3
 C cysteine            1.9          2           1
 D aspartate           0.0          0           0
 E glutamate           6.7          7           1
 F phenylalanine       1.0          1           1
 G glycine            12.4         13           3
 H histidine           0.0          0           0
 I isoleucine          1.9          2           1
 K lysine              4.8          5           2
 L leucine             6.7          7           1
 M methionine          3.8          4           1
 N asparagine          0.0          0           0
 P proline            11.4         12           2
 Q glutamine           6.7          7           1
 R arginine            8.6          9           1
 S serine              5.7          6           2
 T threonine           4.8          5           1
 V valine              2.9          3           1
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342706 
LOC100293292          1.000   PREDICTED: hypothetical protein 
LOC100289753          0.439   PREDICTED: hypothetical protein XP_002347646 
LOC100293898          0.106   PREDICTED: hypothetical protein 
TAF4                  0.053   TBP-associated factor 4 
C17orf96              0.053   hypothetical protein LOC100170841 
LOC388199             0.048   hypothetical protein LOC388199 
LOC388564             0.042   PREDICTED: hypothetical protein 
LOC388564             0.042   PREDICTED: hypothetical protein 
MXRA7                 0.042   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.042   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.042   transmembrane anchor protein 1 isoform 1 
LIPE                  0.042   hormone-sensitive lipase 
MCTP1                 0.042   multiple C2 domains, transmembrane 1 isoform L [Hom...
MYBBP1A               0.037   MYB binding protein 1a isoform 1 
MYBBP1A               0.037   MYB binding protein 1a isoform 2 
LOC100131102          0.037   PREDICTED: hypothetical protein 
LOC100127998          0.037   PREDICTED: hypothetical protein 
LOC100127998          0.037   PREDICTED: hypothetical protein 
LOC100127998          0.037   PREDICTED: hypothetical protein 
HOXA13                0.032   homeobox A13 
ZAR1                  0.032   zygote arrest 1 
VASP                  0.032   vasodilator-stimulated phosphoprotein 
RREB1                 0.032   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.032   ras responsive element binding protein 1 isoform 1 [...
TNRC18                0.032   trinucleotide repeat containing 18 
LATS2                 0.032   LATS, large tumor suppressor, homolog 2 
LOC100133263          0.026   PREDICTED: hypothetical protein 
LOC100133263          0.026   PREDICTED: hypothetical protein 
LOC100133263          0.026   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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