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Search of human proteins with 239742535
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742535 PREDICTED: hypothetical protein XP_002342535 [Homo
sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754020 PREDICTED: hypothetical protein [Homo sapiens] 380 e-106
gi|239748551 PREDICTED: hypothetical protein XP_002346721 [Homo ... 380 e-106
gi|239742535 PREDICTED: hypothetical protein XP_002342535 [Homo ... 380 e-106
gi|239751426 PREDICTED: similar to hCG2038304 [Homo sapiens] 126 1e-29
gi|239745930 PREDICTED: hypothetical protein XP_002343579 [Homo ... 126 1e-29
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 33 0.17
gi|194248095 epsin 1 isoform b [Homo sapiens] 33 0.17
gi|194272148 epsin 1 isoform a [Homo sapiens] 33 0.17
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 32 0.29
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 32 0.29
gi|41350201 epsin 1 isoform c [Homo sapiens] 31 0.49
gi|110832843 TBP-associated factor 4 [Homo sapiens] 31 0.64
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa... 30 0.84
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 30 1.1
gi|239747201 PREDICTED: hypothetical protein [Homo sapiens] 29 1.9
gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isofor... 29 2.4
gi|253735775 Rho/Rac guanine nucleotide exchange factor 2 isofor... 29 2.4
gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isoofor... 29 2.4
gi|239743797 PREDICTED: similar to cell recognition molecule CAS... 29 2.4
gi|239754297 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|239751617 PREDICTED: hypothetical protein XP_002347930 [Homo ... 28 3.2
gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo ... 28 3.2
gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo ... 28 3.2
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 28 3.2
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 28 3.2
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 28 4.1
gi|169160905 PREDICTED: similar to nuclear transport factor 2 [H... 28 5.4
gi|15149472 pre-B-cell leukemia homeobox 4 [Homo sapiens] 28 5.4
gi|139394599 hypermethylated in cancer 2 [Homo sapiens] 28 5.4
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 27 7.1
>gi|239754020 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 380 bits (975), Expect = e-106
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK 60
MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK
Sbjct: 1 MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK 60
Query: 61 SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA 120
SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA
Sbjct: 61 SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA 120
Query: 121 PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI 178
PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI
Sbjct: 121 PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI 178
>gi|239748551 PREDICTED: hypothetical protein XP_002346721 [Homo
sapiens]
Length = 178
Score = 380 bits (975), Expect = e-106
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK 60
MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK
Sbjct: 1 MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK 60
Query: 61 SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA 120
SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA
Sbjct: 61 SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA 120
Query: 121 PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI 178
PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI
Sbjct: 121 PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI 178
>gi|239742535 PREDICTED: hypothetical protein XP_002342535 [Homo
sapiens]
Length = 178
Score = 380 bits (975), Expect = e-106
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK 60
MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK
Sbjct: 1 MTKRGQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQK 60
Query: 61 SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA 120
SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA
Sbjct: 61 SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA 120
Query: 121 PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI 178
PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI
Sbjct: 121 PGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCLGCETWSQGRSFQSFNI 178
>gi|239751426 PREDICTED: similar to hCG2038304 [Homo sapiens]
Length = 165
Score = 126 bits (316), Expect = 1e-29
Identities = 66/101 (65%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Query: 56 MSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTD 115
MSRQKS A +P+WRTS+ A RGNVGLE P+RVPTGALPSGAVKRGP SSRP STD
Sbjct: 1 MSRQKSVAGAKPSWRTSSKAVQRGNVGLEPPYRVPTGALPSGAVKRGPPSSRPRNASSTD 60
Query: 116 SLHCAPGN-AGTQGQPMKAAAGAAPCRATGVELPNSLKDHP 155
+ H A A TQ Q MKAAA A PCRAT ELP +++ HP
Sbjct: 61 NFHLASEKAAATQCQSMKAAAEAVPCRATVAELPKAVRAHP 101
>gi|239745930 PREDICTED: hypothetical protein XP_002343579 [Homo
sapiens]
Length = 165
Score = 126 bits (316), Expect = 1e-29
Identities = 66/101 (65%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Query: 56 MSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTD 115
MSRQKS A +P+WRTS+ A RGNVGLE P+RVPTGALPSGAVKRGP SSRP STD
Sbjct: 1 MSRQKSVAGAKPSWRTSSKAVQRGNVGLEPPYRVPTGALPSGAVKRGPPSSRPRNASSTD 60
Query: 116 SLHCAPGN-AGTQGQPMKAAAGAAPCRATGVELPNSLKDHP 155
+ H A A TQ Q MKAAA A PCRAT ELP +++ HP
Sbjct: 61 NFHLASEKAAATQCQSMKAAAEAVPCRATVAELPKAVRAHP 101
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 32.7 bits (73), Expect = 0.17
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 86 PHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRATGV 145
P PTG P + P + P +ST S +P A G P A+ +P RA+
Sbjct: 435 PRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLT 494
Query: 146 ELPN 149
P+
Sbjct: 495 RTPS 498
Score = 30.8 bits (68), Expect = 0.64
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 50 MYGNTWMSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPL 109
M T +++ S A PT RT A G SP P+ A P+G + P
Sbjct: 415 MLSRTSITKMDSTA--SPT-RTPPRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSP- 470
Query: 110 KCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRAT 143
ST S +P A G P +A+ P RA+
Sbjct: 471 ---STASPTGSPSTASPTGSPSRASLTRTPSRAS 501
Score = 28.5 bits (62), Expect = 3.2
Identities = 19/63 (30%), Positives = 25/63 (39%)
Query: 86 PHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRATGV 145
P T LP ++ R P ++ + S SL P A P AAA P RA+
Sbjct: 99 PRASRTRTLPRASLMRRPSTASLTRSPSRASLTTTPSRASLSMTPSTAAALTMPSRASLT 158
Query: 146 ELP 148
P
Sbjct: 159 RTP 161
Score = 28.5 bits (62), Expect = 3.2
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 23/102 (22%)
Query: 71 TSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRP-----LKCRSTDSLHCAPGNAG 125
T + A G+ SP P+ A P+G+ R L+ P K ST S+ P A
Sbjct: 460 TQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRAS 519
Query: 126 ------------------TQGQPMKAAAGAAPCRATGVELPN 149
G P +AA P RA+ P+
Sbjct: 520 PTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPS 561
Score = 27.7 bits (60), Expect = 5.4
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 101 RGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRA--TGVELPNSLK 152
R P + P + ST SL P A G P A+ P RA TG SLK
Sbjct: 6 RTPSRASPTRTPSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTPPRASLK 59
Score = 27.3 bits (59), Expect = 7.1
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 70 RTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQ 129
RT + A G SP P+ A P+G+ L+ ST S P A G
Sbjct: 342 RTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTG----LSSTASPTGTPPRASPTGT 397
Query: 130 PMKAAAGAAPCRAT 143
P A+ P RA+
Sbjct: 398 PSTASLTRKPPRAS 411
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 32.7 bits (73), Expect = 0.17
Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 36/132 (27%)
Query: 13 ASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQKSAAWEEPTWRTS 72
A EG +P PW S G VPV + + W P P F +G +
Sbjct: 342 AGEGPTPDPWGSSDGGVPVS-GPSASDPWTPAPAFSDPWGGS------------------ 382
Query: 73 TMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMK 132
P +G G + P + D L A +G+ ++
Sbjct: 383 -----------------PAKPSTNGTTAAGGFDTEPDEFSDFDRLRTALPTSGSSAGELE 425
Query: 133 AAAGAAPCRATG 144
AG P R+ G
Sbjct: 426 LLAGEVPARSPG 437
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 32.7 bits (73), Expect = 0.17
Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 36/132 (27%)
Query: 13 ASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQKSAAWEEPTWRTS 72
A EG +P PW S G VPV + + W P P F +G +
Sbjct: 428 AGEGPTPDPWGSSDGGVPVS-GPSASDPWTPAPAFSDPWGGS------------------ 468
Query: 73 TMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMK 132
P +G G + P + D L A +G+ ++
Sbjct: 469 -----------------PAKPSTNGTTAAGGFDTEPDEFSDFDRLRTALPTSGSSAGELE 511
Query: 133 AAAGAAPCRATG 144
AG P R+ G
Sbjct: 512 LLAGEVPARSPG 523
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 32.0 bits (71), Expect = 0.29
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 68 TWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQ 127
+W +T G RVPT ++P G GP +SR ++ + C PG
Sbjct: 53 SWGLATSGHQGRGCGDGGGARVPTKSVPGG----GPRASRSVREVAGGGFACNPGKGPAA 108
Query: 128 GQ--------------PMKAAAGAAPCR--ATGVELPNSLKDHP 155
+ P++ AAGAA CR A G L + ++ P
Sbjct: 109 VRLALGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESP 152
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 32.0 bits (71), Expect = 0.29
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 68 TWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQ 127
+W +T G RVPT ++P G GP +SR ++ + C PG
Sbjct: 53 SWGLATSGHQGRGCGDGGGARVPTKSVPGG----GPRASRSVREVAGGGFACNPGKGPAA 108
Query: 128 GQ--------------PMKAAAGAAPCR--ATGVELPNSLKDHP 155
+ P++ AAGAA CR A G L + ++ P
Sbjct: 109 VRLALGGGWKISKSPIPVQMAAGAAGCRTQARGQRLTSRGRESP 152
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 31.2 bits (69), Expect = 0.49
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 13 ASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNT 54
A EG +P PW S G VPV + + W P P F +G +
Sbjct: 317 AGEGPTPDPWGSSDGGVPVS-GPSASDPWTPAPAFSDPWGGS 357
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 30.8 bits (68), Expect = 0.64
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 61 SAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCA 120
+AA P +T+AR G+ P P P+ A G + P + A
Sbjct: 267 AAAPPPPPPAPATLARPPGHPA-GPPTAAPAVPPPAAAQNGGSAGAAPAPAPA------A 319
Query: 121 PGNAGTQGQPMKAAAGAAPCRATGVELP 148
G AG GQP AA AAP E P
Sbjct: 320 GGPAGVSGQPGPGAAAAAPAPGVKAESP 347
>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
sapiens]
Length = 1194
Score = 30.4 bits (67), Expect = 0.84
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 45 PQFQRMYGNTWMSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPL 104
P FQR ++W+ W+EP R M G G + PTG P G G
Sbjct: 97 PPFQRWPSDSWIRCGAHRDWDEPPPRGGRM---DGWSGDRARAAAPTGLQPPGCKDHGCS 153
Query: 105 SSRPLK 110
S P +
Sbjct: 154 SGSPFR 159
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 85 SPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAP 139
SP R G + +V G +S P RS +LH A G+AG P AA A P
Sbjct: 31 SPARALPGGADNASVASGAAAS-PGPQRSLSALHGAGGSAGPPALPGAPAASAHP 84
>gi|239747201 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 29.3 bits (64), Expect = 1.9
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 103 PLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRATGVELPNSLKDHPFLVSSCL 162
PLSS + CRS+ S C +AG + + P P SL SSC+
Sbjct: 14 PLSSWTMMCRSSTSTKCRCFSAGAEAAADSSRKLPRPVLTMNTVTPRSL-------SSCM 66
Query: 163 GCETWS 168
G T S
Sbjct: 67 GGPTGS 72
>gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isoform 2
[Homo sapiens]
Length = 985
Score = 28.9 bits (63), Expect = 2.4
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 54 TWMSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRS 113
T R SA + ++R S + RG L V T + PL R + +S
Sbjct: 115 TIRERPSSAIYPSDSFRQSLLGSRRGRSSLSLAKSVSTTNIAGHFNDESPLGLRRILSQS 174
Query: 114 TDSLH 118
TDSL+
Sbjct: 175 TDSLN 179
>gi|253735775 Rho/Rac guanine nucleotide exchange factor 2 isoform 1
[Homo sapiens]
Length = 986
Score = 28.9 bits (63), Expect = 2.4
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 54 TWMSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRS 113
T R SA + ++R S + RG L V T + PL R + +S
Sbjct: 115 TIRERPSSAIYPSDSFRQSLLGSRRGRSSLSLAKSVSTTNIAGHFNDESPLGLRRILSQS 174
Query: 114 TDSLH 118
TDSL+
Sbjct: 175 TDSLN 179
>gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isooform 3
[Homo sapiens]
Length = 958
Score = 28.9 bits (63), Expect = 2.4
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 54 TWMSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKCRS 113
T R SA + ++R S + RG L V T + PL R + +S
Sbjct: 88 TIRERPSSAIYPSDSFRQSLLGSRRGRSSLSLAKSVSTTNIAGHFNDESPLGLRRILSQS 147
Query: 114 TDSLH 118
TDSL+
Sbjct: 148 TDSLN 152
>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
[Homo sapiens]
Length = 944
Score = 28.9 bits (63), Expect = 2.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 90 PTGALPSGAVKRGPLSSRPLKCRS---TDSLHCAPGNAGTQG 128
P ++P GA RGP SR L+C S T PG A +G
Sbjct: 136 PAASVP-GAAPRGPERSRKLRCESAGPTSETQLGPGAAWREG 176
>gi|239754297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 28.5 bits (62), Expect = 3.2
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 52 GNTWMSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKC 111
G TW S + T+ + + R G + R + AL + RGP + RP +C
Sbjct: 54 GRTWASPE--------TFSSGSRRARRWPCGAPACTRTLSPALAARPAGRGPCAGRPRRC 105
Query: 112 RSTDSLHC-APGNAGTQGQPMKAAAGAAPCRA 142
D A G Q + G AP RA
Sbjct: 106 GCRDPADSRARGCCQPQRLDVPLRLGQAPLRA 137
>gi|239751617 PREDICTED: hypothetical protein XP_002347930 [Homo
sapiens]
Length = 238
Score = 28.5 bits (62), Expect = 3.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 4 RGQGIAWAVASEGASPKPWWLSY-GVVPVGVQKTRV 38
RG+G A++ G P P W +Y G++ +GV +RV
Sbjct: 55 RGKGHCQALSQLGHCPSPAWNNYSGMMDIGVAPSRV 90
>gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo
sapiens]
Length = 175
Score = 28.5 bits (62), Expect = 3.2
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 52 GNTWMSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKC 111
G TW S + T+ + + R G + R + AL + RGP + RP +C
Sbjct: 54 GRTWASPE--------TFSSGSRRARRWPCGAPACTRTLSPALAARPAGRGPCAGRPRRC 105
Query: 112 RSTDSLHC-APGNAGTQGQPMKAAAGAAPCRA 142
D A G Q + G AP RA
Sbjct: 106 GCRDPADSRARGCCQPQRLDVPLRLGQAPLRA 137
>gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo
sapiens]
Length = 175
Score = 28.5 bits (62), Expect = 3.2
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 52 GNTWMSRQKSAAWEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKRGPLSSRPLKC 111
G TW S + T+ + + R G + R + AL + RGP + RP +C
Sbjct: 54 GRTWASPE--------TFSSGSRRARRWPCGAPACTRTLSPALAARPAGRGPCAGRPRRC 105
Query: 112 RSTDSLHC-APGNAGTQGQPMKAAAGAAPCRA 142
D A G Q + G AP RA
Sbjct: 106 GCRDPADSRARGCCQPQRLDVPLRLGQAPLRA 137
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 28.5 bits (62), Expect = 3.2
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 82 GLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCR 141
GL P V GA+ +R P P + L PG+AG Q P A P
Sbjct: 43 GLSGPAEVGPGAVG----ERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPME 98
Query: 142 ATGVELP 148
E P
Sbjct: 99 TGIAETP 105
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 28.5 bits (62), Expect = 3.2
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 82 GLESPHRVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCR 141
GL P V GA+ +R P P + L PG+AG Q P A P
Sbjct: 43 GLSGPAEVGPGAVG----ERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPME 98
Query: 142 ATGVELP 148
E P
Sbjct: 99 TGIAETP 105
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 28.1 bits (61), Expect = 4.1
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 88 RVPTGALPSGAVKRGPLSSRPLKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCR 141
R P G LP GP PL R PG G+ +P++A G P R
Sbjct: 38 RTPGGQLPGARRGPGPRRPAPLPAR-------PPGALGSVLRPLRARPGCRPRR 84
>gi|169160905 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 340
Score = 27.7 bits (60), Expect = 5.4
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 5 GQGIAWAVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQ----- 59
G G +WA+ S G+ P+P + V V T + F+R+ + R+
Sbjct: 126 GLGGSWAIPSTGSVPRPGGPRWPASIVSVPPTPINAGSRCGGFRRVGAAFGVLREQVRRT 185
Query: 60 --KSAAWEEPTWRTSTMARHRGNVG 82
+S W W S +R N G
Sbjct: 186 CLESVVWTSGLWVRSNPSRQDCNRG 210
>gi|15149472 pre-B-cell leukemia homeobox 4 [Homo sapiens]
Length = 374
Score = 27.7 bits (60), Expect = 5.4
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 44 LPQFQRMYGNTWMSRQKSAA--WEEPTWRTSTMARHRGNVGLESPHRVPTGALPSGAVKR 101
+ Q +GN + +K+ EE T T A VG+ H SG+
Sbjct: 254 ISQVSNWFGNKRIRYKKNMGKFQEEATIYTGKTAVDTTEVGVPGNHASCLSTPSSGSSGP 313
Query: 102 GPLSSRP---LKCRSTDSLHCAPGNAGTQGQPMKAAAGAAPCRAT 143
PL S L R+ SL PG Q Q + GA P AT
Sbjct: 314 FPLPSAGDAFLTLRTLASLQPPPGGGCLQSQAQGSWQGATPQPAT 358
>gi|139394599 hypermethylated in cancer 2 [Homo sapiens]
Length = 615
Score = 27.7 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 88 RVPTGALPSGAVKRGPLSSRPLKCRSTD 115
RVP G L SGA GP P C+ +
Sbjct: 372 RVPNGILASGAGPSGPYGEPPYPCKEEE 399
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 27.3 bits (59), Expect = 7.1
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 11 AVASEGASPKPWWLSYGVVPVGVQKTRVELWEPLPQFQRMYGNTWMSRQKSAAWEEPTWR 70
A+A +GAS L+ VG+Q+ + + +P + + S K EP
Sbjct: 861 ALARKGASAPDACLTMSPNSVGIQEMEMGVKQPHQMVSQGLASLRKSANKLKPRHEPKIF 920
Query: 71 TSTMARHRGNVGLESPHRVPTG 92
TST + RG GL P G
Sbjct: 921 TST-TQTRGAKGLADPSHTQAG 941
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,446,700
Number of Sequences: 37866
Number of extensions: 426924
Number of successful extensions: 1334
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 63
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.