Guide to the Human Genome
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Name: LOC100289555 Sequence: fasta or formatted (165aa) NCBI GI: 239751426
Description:

PREDICTED: similar to hCG2038304

Not currently referenced in the text

Other entries for this name:
alt mRNA {165aa} PREDICTED: hypothetical protein XP_002343579
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         21           3
 C cysteine            2.4          4           1
 D aspartate           1.8          3           1
 E glutamate           2.4          4           1
 F phenylalanine       4.8          8           2
 G glycine             7.9         13           1
 H histidine           3.0          5           1
 I isoleucine          1.8          3           1
 K lysine              4.8          8           1
 L leucine             7.9         13           1
 M methionine          2.4          4           1
 N asparagine          3.6          6           1
 P proline            10.3         17           2
 Q glutamine           3.0          5           1
 R arginine            6.7         11           1
 S serine              9.1         15           2
 T threonine           3.6          6           1
 V valine              6.7         11           1
 W tryptophan          1.8          3           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2038304 
LOC100289555          1.000   PREDICTED: hypothetical protein XP_002343579 
LOC100292332          0.316   PREDICTED: hypothetical protein 
LOC100290495          0.316   PREDICTED: hypothetical protein XP_002346721 
LOC100287671          0.316   PREDICTED: hypothetical protein XP_002342535 
SDK1                  0.028   sidekick 1 
CREM                  0.019   cAMP responsive element modulator isoform a 
CREM                  0.019   cAMP responsive element modulator isoform u 
CREM                  0.019   cAMP responsive element modulator isoform o 
CREM                  0.019   cAMP responsive element modulator isoform m 
HIST1H1C              0.016   histone cluster 1, H1c 
PTK2B                 0.016   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.016   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.016   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
NCOR1                 0.016   nuclear receptor co-repressor 1 
C10orf71              0.016   hypothetical protein LOC118461 isoform 1 
PABPC1                0.013   poly(A) binding protein, cytoplasmic 1 
MAST4                 0.013   microtubule associated serine/threonine kinase famil...
TACC2                 0.013   transforming, acidic coiled-coil containing protein...
SPRY1                 0.013   sprouty homolog 1, antagonist of FGF signaling [Homo...
SPRY1                 0.013   sprouty homolog 1, antagonist of FGF signaling [Homo...
SAMD1                 0.013   sterile alpha motif domain containing 1 
LOC100133756          0.013   PREDICTED: hypothetical protein, partial 
LOC100132815          0.009   PREDICTED: hypothetical protein 
LOC100132815          0.009   PREDICTED: hypothetical protein 
LOC100132815          0.009   PREDICTED: hypothetical protein 
PHRF1                 0.009   PHD and ring finger domains 1 
STARD9                0.009   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.009   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.009   PREDICTED: StAR-related lipid transfer (START) doma...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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