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Search of human proteins with 239742460
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo
sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo ... 416 e-117
gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo ... 394 e-110
gi|239753956 PREDICTED: hypothetical protein [Homo sapiens] 390 e-109
gi|194272180 plexin B1 [Homo sapiens] 36 0.018
gi|40254442 plexin B1 [Homo sapiens] 36 0.018
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 34 0.069
gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo sap... 34 0.090
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|21624641 calcium binding protein 4 [Homo sapiens] 33 0.12
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 33 0.15
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 33 0.20
gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo ... 32 0.26
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens] 32 0.34
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 32 0.34
gi|91208420 bassoon protein [Homo sapiens] 32 0.34
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 32 0.34
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 32 0.45
gi|38348332 killer cell lectin-like receptor subfamily G, member... 32 0.45
gi|12707580 paired-like homeobox 2b [Homo sapiens] 31 0.76
gi|126352608 elastin isoform e precursor [Homo sapiens] 30 1.00
gi|126352446 elastin isoform d precursor [Homo sapiens] 30 1.00
gi|126352322 elastin isoform c precursor [Homo sapiens] 30 1.00
gi|126352700 elastin isoform b precursor [Homo sapiens] 30 1.00
gi|126352440 elastin isoform a precursor [Homo sapiens] 30 1.00
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 30 1.00
gi|239753600 PREDICTED: hypothetical protein [Homo sapiens] 30 1.00
gi|169164963 PREDICTED: hypothetical protein [Homo sapiens] 30 1.00
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 30 1.00
>gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo
sapiens]
Length = 195
Score = 416 bits (1068), Expect = e-117
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MDRSQGQGCAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQ 60
MDRSQGQGCAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQ
Sbjct: 1 MDRSQGQGCAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQ 60
Query: 61 RYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSRHARRHDVTERTTPQS 120
RYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSRHARRHDVTERTTPQS
Sbjct: 61 RYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSRHARRHDVTERTTPQS 120
Query: 121 LADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSA 180
LADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSA
Sbjct: 121 LADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSA 180
Query: 181 VNVDKLGQPGRAGAT 195
VNVDKLGQPGRAGAT
Sbjct: 181 VNVDKLGQPGRAGAT 195
>gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo
sapiens]
Length = 197
Score = 394 bits (1013), Expect = e-110
Identities = 185/186 (99%), Positives = 185/186 (99%)
Query: 10 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 69
AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG
Sbjct: 12 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 71
Query: 70 GDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 129
GDTGADACPKVPGAGPEV SPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV
Sbjct: 72 GDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 131
Query: 130 AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP 189
AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP
Sbjct: 132 AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP 191
Query: 190 GRAGAT 195
GRAGAT
Sbjct: 192 GRAGAT 197
>gi|239753956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 390 bits (1001), Expect = e-109
Identities = 183/186 (98%), Positives = 183/186 (98%)
Query: 10 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 69
AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG
Sbjct: 12 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 71
Query: 70 GDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 129
GDTGAD CPKVP AGPEV SPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV
Sbjct: 72 GDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 131
Query: 130 AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP 189
AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP
Sbjct: 132 AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP 191
Query: 190 GRAGAT 195
GRAGAT
Sbjct: 192 GRAGAT 197
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 36.2 bits (82), Expect = 0.018
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 25 SCHLGPRQDQLLSGAVKP---ARGGCQSPGKNTGVGDEQRYSPCP-----RRGGDTGADA 76
SC GP S V P ARGG P + + +P P G + A A
Sbjct: 665 SCDAGPMVASHQSPLVSPDPPARGG---PSPSPPTAPKALATPAPDTLPVEPGAPSTATA 721
Query: 77 CPKVPGAGPEVVSPHGPGAGPGR-TNYNSRHARRHDVTERTTPQS 120
PGA P ++SP GP AG G ++ S + H+ +PQ+
Sbjct: 722 SDISPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQN 766
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 36.2 bits (82), Expect = 0.018
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 25 SCHLGPRQDQLLSGAVKP---ARGGCQSPGKNTGVGDEQRYSPCP-----RRGGDTGADA 76
SC GP S V P ARGG P + + +P P G + A A
Sbjct: 665 SCDAGPMVASHQSPLVSPDPPARGG---PSPSPPTAPKALATPAPDTLPVEPGAPSTATA 721
Query: 77 CPKVPGAGPEVVSPHGPGAGPGR-TNYNSRHARRHDVTERTTPQS 120
PGA P ++SP GP AG G ++ S + H+ +PQ+
Sbjct: 722 SDISPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQN 766
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 34.3 bits (77), Expect = 0.069
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 29 GPRQDQLLSGAVKPARGGCQS-PGKN--TGVGDEQRYSPCPRRGGDTGADACPKVPGAGP 85
GP L G P+ GC+ PG + GV P R GDTG D P PG
Sbjct: 1389 GPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYPGGPGPPG 1448
Query: 86 EVVSPHGPGAGPG 98
+ P G GPG
Sbjct: 1449 PIGDPGPKGFGPG 1461
>gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo
sapiens]
Length = 500
Score = 33.9 bits (76), Expect = 0.090
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 15 LESRPAHAARSCHLGPRQDQLLSGAVKPAR------GGCQSPGKNTGVGDEQRYSPCPRR 68
L S PAH+ L PR QLLSG PA+ C P + T +G+E+ +
Sbjct: 26 LSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPTRVT-LGEERAWR---SH 81
Query: 69 GGDTGADACPKVPGAGPEVVSPHGPGAG 96
G + G C AG ++P G G
Sbjct: 82 GSNAGGHTCLPRRTAGAGSLTPGGERGG 109
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.5 bits (75), Expect = 0.12
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 20 AHAARSCHLGPRQDQLLSGAVK-PARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACP 78
A A + GP+ + G P RG P +++ +QR P R G G P
Sbjct: 126 AGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSA---QQRRRPTRRPRGTRGGARRP 182
Query: 79 KVPGAGPEVVSPHGP---GAGPGR 99
V G G V P GP GA P R
Sbjct: 183 GVRGQGAAAVGPTGPRPTGAPPSR 206
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.5 bits (75), Expect = 0.12
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 20 AHAARSCHLGPRQDQLLSGAVK-PARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACP 78
A A + GP+ + G P RG P +++ +QR P R G G P
Sbjct: 126 AGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSA---QQRRRPTRRPRGTRGGARRP 182
Query: 79 KVPGAGPEVVSPHGP---GAGPGR 99
V G G V P GP GA P R
Sbjct: 183 GVRGQGAAAVGPTGPRPTGAPPSR 206
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.5 bits (75), Expect = 0.12
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 20 AHAARSCHLGPRQDQLLSGAVK-PARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACP 78
A A + GP+ + G P RG P +++ +QR P R G G P
Sbjct: 126 AGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSA---QQRRRPTRRPRGTRGGARRP 182
Query: 79 KVPGAGPEVVSPHGP---GAGPGR 99
V G G V P GP GA P R
Sbjct: 183 GVRGQGAAAVGPTGPRPTGAPPSR 206
>gi|21624641 calcium binding protein 4 [Homo sapiens]
Length = 275
Score = 33.5 bits (75), Expect = 0.12
Identities = 32/113 (28%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 46 GCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSR 105
G + K TG EQ P G+ P G GP P PG R ++ R
Sbjct: 47 GLRGSRKRTGSSGEQTGPEAP------GSSNNPPSTGEGPAGAPPASPGPASSRQSHRHR 100
Query: 106 HARRHDVTERTTPQSL-----ADGEAGRVAEDLCLRAWNGFSRTR-GNTSHNK 152
HD +RT L D E G D A+ F R G SH +
Sbjct: 101 PDSLHDAAQRTYGPLLNRVFGKDRELGPEELDELQAAFEEFDTDRDGYISHRE 153
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 33.1 bits (74), Expect = 0.15
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 38 GAVKPARGGCQSPG-------KNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEV--- 87
G PARG S G K +GD R +P + G TG P +PG G +
Sbjct: 885 GQQNPARGPHPSQGPIPFQQQKTPLLGDGPR-APFNQEGQSTGPP--PLIPGLGQQGAQG 941
Query: 88 -VSPHGPGAGPGRTNYNSRHARRH---DVTERTTPQS 120
+ P PG GPG +SR H ++ER QS
Sbjct: 942 RIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQS 978
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 32.7 bits (73), Expect = 0.20
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 2 DRSQGQGCAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQR 61
++ + G E G+ +S AR +GPR P G + P + G E+
Sbjct: 709 NKGEEGGAGEPGKYDSM----ARKGDIGPRGP--------PGIPGREGPKGSKG---ERG 753
Query: 62 YSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPGRTNY 102
Y P GD G P +PGA P GP GRT +
Sbjct: 754 YPGIPGEKGDEGLQGIPGIPGA----PGPTGPPGLMGRTGH 790
>gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo
sapiens]
Length = 399
Score = 32.3 bits (72), Expect = 0.26
Identities = 44/149 (29%), Positives = 57/149 (38%), Gaps = 36/149 (24%)
Query: 1 MDRSQGQGCAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQ 60
++R +G CA + L GPRQ + LS + +G Q P + VG Q
Sbjct: 235 VERQRGAACALSVALSG-----------GPRQRRALSLVWRRGQGR-QGPEPPSPVGQAQ 282
Query: 61 RYSPCPRRGGDTGADACPKVPGAGPEVVSPHGP--GAGPGRTNYNSRHARRHDVTERTTP 118
G DT A PEV PHGP A PG+ R A R E T
Sbjct: 283 ALEEACECGVDT----------ARPEVGGPHGPLLVAPPGQ-----RVAVRRRHHEVTAV 327
Query: 119 QSLADGEAGRVAED-----LC--LRAWNG 140
L +A R A + +C +R W G
Sbjct: 328 DDLRAEQAARAAPETRVLRVCVRVRVWAG 356
>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 361
Score = 32.0 bits (71), Expect = 0.34
Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 1 MDRSQGQGCAETGELESRPAHAARSC--HLGPRQ-DQLLSGAVKPAR--GGCQSPGKNTG 55
+D G A TG + P R+ HL PR+ QL S ++ A G CQ TG
Sbjct: 218 VDHQGGFALAPTGSHRTGPGCTRRALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTG 277
Query: 56 VGDEQRYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSR 105
G P RRGG P PE P GA T SR
Sbjct: 278 HGWSVAARPGARRGGRRPRSPSPARGEPEPE---PERSGAARSGTGAESR 324
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 32.0 bits (71), Expect = 0.34
Identities = 30/113 (26%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
Query: 6 GQGCAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGC-QSPGKNTGVGDEQRYSP 64
GQGC+ L R G + + GA G Q PG G+ E+ +SP
Sbjct: 478 GQGCSGQALLRCGSNRTLRGGGTGQKWPGVPLGARTGLGAGVRQHPGGIAGLSRERGHSP 537
Query: 65 -------------------CPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPG 98
PRR G A +VPG G + P P + PG
Sbjct: 538 WAALTDSAAGAELPGLVPSAPRRPGSATAPRPLRVPGRGAQSAEPGTPPSPPG 590
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 32.0 bits (71), Expect = 0.34
Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 42 PARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGA------DACPKVPGAGPEVVSPHGPGA 95
P G PG G G + S P GG A A P VPG GP GPG
Sbjct: 17 PPGGAGPGPGPGPGPGAGKPPS-APAGGGQLPAAGAARSTAVPPVPGPGP----GPGPGP 71
Query: 96 GPGRTN 101
GPG T+
Sbjct: 72 GPGSTS 77
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 32.0 bits (71), Expect = 0.34
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 15 LESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNT----------GVGDEQRYSP 64
L S PA AA G + G+V + GG QSP ++ GV D R SP
Sbjct: 116 LSSLPAGAALCLKYGESASR---GSVAESSGGEQSPDDDSDGRCELVLRAGVADP-RASP 171
Query: 65 CPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPG 98
GG A+ C G V P G G G G
Sbjct: 172 GAGGGGAKAAEGCSNAHLHGGASVPPGGLGGGGG 205
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.45
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 42 PARGGCQ-SPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGPG 98
P R GC + G+ G Y P GG G+ P GP P+GP AG G
Sbjct: 5 PYRQGCPGAAGQAPGAPPGSYYPGPPNSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGG 62
>gi|38348332 killer cell lectin-like receptor subfamily G, member 2
[Homo sapiens]
Length = 409
Score = 31.6 bits (70), Expect = 0.45
Identities = 29/105 (27%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 29 GPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGG------DTGADACPKVPG 82
GP +GAV+ A G P ++ P PR G G CP+ P
Sbjct: 43 GPESSPSPAGAVEKAAGAGLEPSS-------KKKPPSPRPGSPRVPPLSLGYGVCPEPPS 95
Query: 83 AGPEVVSPHGPGAGPGRTNYNSRHARRH-DVTERTTPQSLADGEA 126
GP +V G PG S A V R P A G +
Sbjct: 96 PGPALVKLPRNGEAPGAEPAPSAWAPMELQVDVRVKPVGAAGGSS 140
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 30.8 bits (68), Expect = 0.76
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 20 AHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSP-CPRRGGDTGADACP 78
A AA++ G + D K A+ P G G +P C GG G +
Sbjct: 164 AAAAKNGSSGKKSDSSRDDESKEAKS--TDPDSTGGPGPNPNPTPSCGANGGGGGGPS-- 219
Query: 79 KVPGAGPEVVSPHGPGAGPGR 99
P P P GPG PG+
Sbjct: 220 --PAGAPGAAGPGGPGGEPGK 238
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 30.4 bits (67), Expect = 1.00
Identities = 27/72 (37%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 37 SGAVKPARGGCQSPGKNTGVGDEQRYS----PCPR-------RGGDTGADACPKVPGAGP 85
+GAV P G PGK GVG Y P R G TGA PK PG G
Sbjct: 125 AGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 184
Query: 86 EVVSPHGPGAGP 97
PG GP
Sbjct: 185 AFAGI--PGVGP 194
Score = 28.5 bits (62), Expect = 3.8
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 38 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGP 97
G V A G P TGVG + + + GA A +PG G V P PGA P
Sbjct: 233 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGV-PGVPGAIP 290
Query: 98 G 98
G
Sbjct: 291 G 291
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 30.4 bits (67), Expect = 1.00
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 28 LGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYS----PCPR-------RGGDTGADA 76
LG + GAV P G PGK GVG Y P R G TGA
Sbjct: 121 LGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGV 180
Query: 77 CPKVPGAGPEVVSPHGPGAGP 97
PK PG G PG GP
Sbjct: 181 KPKAPGVGGAFAGI--PGVGP 199
Score = 28.5 bits (62), Expect = 3.8
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 38 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGP 97
G V A G P TGVG + + + GA A +PG G V P PGA P
Sbjct: 238 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGV-PGVPGAIP 295
Query: 98 G 98
G
Sbjct: 296 G 296
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 30.4 bits (67), Expect = 1.00
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 28 LGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYS----PCPR-------RGGDTGADA 76
LG + GAV P G PGK GVG Y P R G TGA
Sbjct: 121 LGVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGV 180
Query: 77 CPKVPGAGPEVVSPHGPGAGP 97
PK PG G PG GP
Sbjct: 181 KPKAPGVGGAFAGI--PGVGP 199
Score = 28.5 bits (62), Expect = 3.8
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 38 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGP 97
G V A G P TGVG + + + GA A +PG G V P PGA P
Sbjct: 238 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGV-PGVPGAIP 295
Query: 98 G 98
G
Sbjct: 296 G 296
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 30.4 bits (67), Expect = 1.00
Identities = 27/72 (37%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 37 SGAVKPARGGCQSPGKNTGVGDEQRYS----PCPR-------RGGDTGADACPKVPGAGP 85
+GAV P G PGK GVG Y P R G TGA PK PG G
Sbjct: 115 AGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 174
Query: 86 EVVSPHGPGAGP 97
PG GP
Sbjct: 175 AFAGI--PGVGP 184
Score = 28.5 bits (62), Expect = 3.8
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 38 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGP 97
G V A G P TGVG + + + GA A +PG G V P PGA P
Sbjct: 223 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGV-PGVPGAIP 280
Query: 98 G 98
G
Sbjct: 281 G 281
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 30.4 bits (67), Expect = 1.00
Identities = 27/72 (37%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 37 SGAVKPARGGCQSPGKNTGVGDEQRYS----PCPR-------RGGDTGADACPKVPGAGP 85
+GAV P G PGK GVG Y P R G TGA PK PG G
Sbjct: 125 AGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 184
Query: 86 EVVSPHGPGAGP 97
PG GP
Sbjct: 185 AFAGI--PGVGP 194
Score = 28.5 bits (62), Expect = 3.8
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 38 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVVSPHGPGAGP 97
G V A G P TGVG + + + GA A +PG G V P PGA P
Sbjct: 233 GGVAGAAGKAGYP-TGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGV-PGVPGAIP 290
Query: 98 G 98
G
Sbjct: 291 G 291
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.4 bits (67), Expect = 1.00
Identities = 29/99 (29%), Positives = 32/99 (32%), Gaps = 14/99 (14%)
Query: 44 RGGCQSPGKNTGVGD--------EQRYSPCPRRGGDTGADACPKVPGAG--PEVVSPHGP 93
RGG PGKN G+ E P G+ G D P PGA P G
Sbjct: 428 RGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA 487
Query: 94 GAGPGRTNYNSRHARRHDVTERTTPQSL----ADGEAGR 128
G N + ER P A GE GR
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGR 526
Score = 28.5 bits (62), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 50 PGKNTGVGDEQRYSPCPRRG--GDTGADACPKVPGAGPEVVSPHGPGA 95
PG+ G+ P RG G+ G D P PG SP GPG+
Sbjct: 500 PGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547
Score = 28.1 bits (61), Expect = 4.9
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 29 GPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADACPKVPGAGPEVV 88
GP ++ G P RG PG++ GV P G G+D P PG+ E
Sbjct: 504 GPAGERGAPGPAGP-RGAAGEPGRD-GVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESG 561
Query: 89 SPHGPG-AGP 97
P PG +GP
Sbjct: 562 RPGPPGPSGP 571
>gi|239753600 PREDICTED: hypothetical protein [Homo sapiens]
Length = 258
Score = 30.4 bits (67), Expect = 1.00
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 77 CPKVPGAGPEVVSPHGPGAGPGRT--NYNSRHARRHDVTERTTPQSLADGEAGRVAEDLC 134
C + GAGP V P PG GR Y + R H ER +++ GE VA+
Sbjct: 10 CTQRDGAGPWV--PRDPGWRSGRAAGAYLAAGRRGHAAAERVEARAVF-GEFLLVAQ--- 63
Query: 135 LRAWNGFSRTRGNTSHNK--------RQLWWNVQRRCAAQACRALGNPRRSRSAV 181
R RG H + R L + +R A RA+ P+RSR+AV
Sbjct: 64 -RGHLQLKLRRGQLGHQRLLALPSAQRLLLERLVQRAQAGLERAVVRPQRSRAAV 117
>gi|169164963 PREDICTED: hypothetical protein [Homo sapiens]
Length = 250
Score = 30.4 bits (67), Expect = 1.00
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 77 CPKVPGAGPEVVSPHGPGAGPGRT--NYNSRHARRHDVTERTTPQSLADGEAGRVAEDLC 134
C + GAGP V P PG GR Y + R H ER +++ GE VA+
Sbjct: 10 CTQRDGAGPWV--PRDPGWRSGRAAGAYLAAGRRGHAAAERVEARAVF-GEFLLVAQ--- 63
Query: 135 LRAWNGFSRTRGNTSHNK--------RQLWWNVQRRCAAQACRALGNPRRSRSAV 181
R RG H + R L + +R A RA+ P+RSR+AV
Sbjct: 64 -RGHLQLKLRRGQLGHQRLLALPSAQRLLLERLVQRAQAGLERAVVRPQRSRAAV 117
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 30.4 bits (67), Expect = 1.00
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 6 GQGCAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPC 65
GQ GE R A R+ PR ++ G +P G S + G+ +
Sbjct: 1304 GQKKQRLGEQRERSASPQRAAR--PRLEEAPGGQGRPEAGRPASEARAPGLAAADA-ADA 1360
Query: 66 PRRGGD------TGADACPKV-PGAGPEVVSPHGPGAG 96
R GG G++ C + PGA P P G G+G
Sbjct: 1361 ARAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGSG 1398
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,881,085
Number of Sequences: 37866
Number of extensions: 563829
Number of successful extensions: 1952
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 282
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.