Search of human proteins with 239742243

Search of human proteins with 239742243

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
         (411 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]               844   0.0  
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                 800   0.0  
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                 419   e-117
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                 189   5e-48
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                 189   5e-48
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                 189   5e-48
gi|226437602 NK1 homeobox 2 [Homo sapiens]                            184   1e-46
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                   119   4e-27
gi|89257348 homeo box HB9 [Homo sapiens]                              110   3e-24
gi|24497589 aristaless related homeobox [Homo sapiens]                100   2e-21
gi|4502365 NK3 homeobox 2 [Homo sapiens]                              100   4e-21
gi|4758168 distal-less homeobox 2 [Homo sapiens]                       96   5e-20
gi|19923391 homeobox D3 [Homo sapiens]                                 95   1e-19
gi|24497513 homeobox A3 isoform a [Homo sapiens]                       94   2e-19
gi|13562112 homeobox A3 isoform a [Homo sapiens]                       94   2e-19
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...    92   7e-19
gi|157426823 NK2 homeobox 4 [Homo sapiens]                             92   9e-19
gi|126090909 engrailed homeobox 1 [Homo sapiens]                       90   3e-18
gi|157743259 H6 family homeobox 3 [Homo sapiens]                       90   4e-18
gi|84105335 mesenchyme homeobox 2 [Homo sapiens]                       89   9e-18
gi|14149728 BarH-like homeobox 1 [Homo sapiens]                        89   9e-18
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]             89   9e-18
gi|84570137 homeobox B3 [Homo sapiens]                                 89   9e-18
gi|33457326 GS homeobox 1 [Homo sapiens]                               88   1e-17
gi|4503615 even-skipped homeobox 1 [Homo sapiens]                      87   3e-17
gi|7710121 engrailed homeobox 2 [Homo sapiens]                         87   4e-17
gi|6633798 BarH-like homeobox 2 [Homo sapiens]                         86   5e-17
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    86   6e-17
gi|7657180 VENT homeobox [Homo sapiens]                                86   8e-17
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap...    85   1e-16

>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score =  844 bits (2181), Expect = 0.0
 Identities = 411/411 (100%), Positives = 411/411 (100%)

Query: 1   MDGRAELPAFPRAGAPPLAASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRR 60
           MDGRAELPAFPRAGAPPLAASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRR
Sbjct: 1   MDGRAELPAFPRAGAPPLAASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRR 60

Query: 61  RRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAG 120
           RRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAG
Sbjct: 61  RRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAG 120

Query: 121 DPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGG 180
           DPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGG
Sbjct: 121 DPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGG 180

Query: 181 GGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTA 240
           GGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTA
Sbjct: 181 GGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTA 240

Query: 241 TAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTE 300
           TAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTE
Sbjct: 241 TAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTE 300

Query: 301 TQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPL 360
           TQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPL
Sbjct: 301 TQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPL 360

Query: 361 GMHGPAGYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGSQTYGAPAFYAPHL 411
           GMHGPAGYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGSQTYGAPAFYAPHL
Sbjct: 361 GMHGPAGYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGSQTYGAPAFYAPHL 411


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score =  800 bits (2067), Expect = 0.0
 Identities = 389/390 (99%), Positives = 389/390 (99%)

Query: 22  DTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAP 81
           DTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAP
Sbjct: 425 DTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAP 484

Query: 82  CAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGG 141
           CAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGG
Sbjct: 485 CAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGG 544

Query: 142 GHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPG 201
           GHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPG
Sbjct: 545 GHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPG 604

Query: 202 ATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRR 261
           ATVDEAAAPGPRENSPVA GPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRR
Sbjct: 605 ATVDEAAAPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRR 664

Query: 262 ARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGA 321
           ARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGA
Sbjct: 665 ARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGA 724

Query: 322 DTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQ 381
           DTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQ
Sbjct: 725 DTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQ 784

Query: 382 LPFLSSPAVLSPFVLGSQTYGAPAFYAPHL 411
           LPFLSSPAVLSPFVLGSQTYGAPAFYAPHL
Sbjct: 785 LPFLSSPAVLSPFVLGSQTYGAPAFYAPHL 814


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score =  419 bits (1078), Expect = e-117
 Identities = 201/202 (99%), Positives = 201/202 (99%)

Query: 210 PGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE 269
           PGPRENSPVA GPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE
Sbjct: 48  PGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYE 107

Query: 270 QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG 329
           QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG
Sbjct: 108 QLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG 167

Query: 330 GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA 389
           GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA
Sbjct: 168 GGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA 227

Query: 390 VLSPFVLGSQTYGAPAFYAPHL 411
           VLSPFVLGSQTYGAPAFYAPHL
Sbjct: 228 VLSPFVLGSQTYGAPAFYAPHL 249


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score =  189 bits (479), Expect = 5e-48
 Identities = 160/385 (41%), Positives = 190/385 (49%), Gaps = 64/385 (16%)

Query: 32  GAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAAC-APCASAPCAPAPAASG 90
           G A+ A      SFSVLDILDP KF         L  V PA   A  + A       AS 
Sbjct: 7   GGAKAAPSHHKISFSVLDILDPQKFTR-----AALPAVRPAPREARKSLAEVEAGKDASS 61

Query: 91  RPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSG 150
           R P   +LE      A  +    A P ++ D   A            +G G    S   G
Sbjct: 62  RDP-VRQLETPGQGFAASLLTRQAHPHHSSDARDA------------AGPGAGQASPLEG 108

Query: 151 DEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAP 210
            E  ++ED ++   P     R  E A     GL               SP A     A+ 
Sbjct: 109 SEAEEEEDAEDPRRP-----RLRERAARLLPGLA-------------RSPDAPAGALASG 150

Query: 211 GPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQ 270
            P E+        GG    GG   +P G+  + +P+R+R   +    KPRRARTAFTYEQ
Sbjct: 151 EPCED--------GG----GGPVRSPPGSPGSPRPRRRRL--EPNCAKPRRARTAFTYEQ 196

Query: 271 LVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG 330
           LVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD +A   GG
Sbjct: 197 LVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQV-GG 255

Query: 331 GGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLV--CAAQLPFLSSP 388
           G P PGA  G G  GG S  SP PP    L       +P++    ++   AA  P L++ 
Sbjct: 256 GAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSYSAANVLFPSAASFP-LTAA 309

Query: 389 AVLSPFV--LGSQTYGAPAFYAPHL 411
           A  SPF   LG  +Y  P FYAP L
Sbjct: 310 APGSPFAPFLG-PSYLTP-FYAPRL 332


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score =  189 bits (479), Expect = 5e-48
 Identities = 160/385 (41%), Positives = 190/385 (49%), Gaps = 64/385 (16%)

Query: 32  GAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAAC-APCASAPCAPAPAASG 90
           G A+ A      SFSVLDILDP KF         L  V PA   A  + A       AS 
Sbjct: 7   GGAKAAPSHHKISFSVLDILDPQKFTR-----AALPAVRPAPREARKSLAEVEAGKDASS 61

Query: 91  RPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSG 150
           R P   +LE      A  +    A P ++ D   A            +G G    S   G
Sbjct: 62  RDP-VRQLETPGQGFAASLLTRQAHPHHSSDARDA------------AGPGAGQASPLEG 108

Query: 151 DEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAP 210
            E  ++ED ++   P     R  E A     GL               SP A     A+ 
Sbjct: 109 SEAEEEEDAEDPRRP-----RLRERAARLLPGLA-------------RSPDAPAGALASG 150

Query: 211 GPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQ 270
            P E+        GG    GG   +P G+  + +P+R+R   +    KPRRARTAFTYEQ
Sbjct: 151 EPCED--------GG----GGPVRSPPGSPGSPRPRRRRL--EPNCAKPRRARTAFTYEQ 196

Query: 271 LVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG 330
           LVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD +A   GG
Sbjct: 197 LVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQV-GG 255

Query: 331 GGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLV--CAAQLPFLSSP 388
           G P PGA  G G  GG S  SP PP    L       +P++    ++   AA  P L++ 
Sbjct: 256 GAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSYSAANVLFPSAASFP-LTAA 309

Query: 389 AVLSPFV--LGSQTYGAPAFYAPHL 411
           A  SPF   LG  +Y  P FYAP L
Sbjct: 310 APGSPFAPFLG-PSYLTP-FYAPRL 332


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score =  189 bits (479), Expect = 5e-48
 Identities = 160/385 (41%), Positives = 190/385 (49%), Gaps = 64/385 (16%)

Query: 32  GAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAAC-APCASAPCAPAPAASG 90
           G A+ A      SFSVLDILDP KF         L  V PA   A  + A       AS 
Sbjct: 7   GGAKAAPSHHKISFSVLDILDPQKFTR-----AALPAVRPAPREARKSLAEVEAGKDASS 61

Query: 91  RPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSG 150
           R P   +LE      A  +    A P ++ D   A            +G G    S   G
Sbjct: 62  RDP-VRQLETPGQGFAASLLTRQAHPHHSSDARDA------------AGPGAGQASPLEG 108

Query: 151 DEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAP 210
            E  ++ED ++   P     R  E A     GL               SP A     A+ 
Sbjct: 109 SEAEEEEDAEDPRRP-----RLRERAARLLPGLA-------------RSPDAPAGALASG 150

Query: 211 GPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQ 270
            P E+        GG    GG   +P G+  + +P+R+R   +    KPRRARTAFTYEQ
Sbjct: 151 EPCED--------GG----GGPVRSPPGSPGSPRPRRRRL--EPNCAKPRRARTAFTYEQ 196

Query: 271 LVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG 330
           LVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD +A   GG
Sbjct: 197 LVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQV-GG 255

Query: 331 GGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLV--CAAQLPFLSSP 388
           G P PGA  G G  GG S  SP PP    L       +P++    ++   AA  P L++ 
Sbjct: 256 GAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSYSAANVLFPSAASFP-LTAA 309

Query: 389 AVLSPFV--LGSQTYGAPAFYAPHL 411
           A  SPF   LG  +Y  P FYAP L
Sbjct: 310 APGSPFAPFLG-PSYLTP-FYAPRL 332


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score =  184 bits (468), Expect = 1e-46
 Identities = 153/384 (39%), Positives = 185/384 (48%), Gaps = 84/384 (21%)

Query: 32  GAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGR 91
           G A+ A      SFSVLDILDP KF                          A  PA    
Sbjct: 7   GGAKAAPSHHKISFSVLDILDPQKFTR------------------------AALPAVRPA 42

Query: 92  PPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGD 151
           P  A +      AG         +  ++ DP +  + ET D  G         P A    
Sbjct: 43  PREARKSLAEVEAG---------KDASSRDPVR--QLETPDAAG---------PGAGQAS 82

Query: 152 EVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPG 211
            +   E ++E++A +    R  E A     GL               SP A     A+  
Sbjct: 83  PLEGSEAEEEEDAEDPRRPRLRERAARLLPGLAR-------------SPDAPAGALASGE 129

Query: 212 PRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQL 271
           P E+        GG    GG   +P G+  + +P+R+R   +    KPRRARTAFTYEQL
Sbjct: 130 PCED--------GG----GGPVRSPPGSPGSPRPRRRRL--EPNCAKPRRARTAFTYEQL 175

Query: 272 VALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGG 331
           VALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD +A   GGG
Sbjct: 176 VALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQV-GGG 234

Query: 332 GPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLV--CAAQLPFLSSPA 389
            P PGA  G G  GG S  SP PP    L       +P++    ++   AA  P L++ A
Sbjct: 235 APQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSYSAANVLFPSAASFP-LTAAA 288

Query: 390 VLSPFV--LGSQTYGAPAFYAPHL 411
             SPF   LG  +Y  P FYAP L
Sbjct: 289 PGSPFAPFLG-PSYLTP-FYAPRL 310


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score =  119 bits (299), Expect = 4e-27
 Identities = 103/304 (33%), Positives = 124/304 (40%), Gaps = 58/304 (19%)

Query: 97  ELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDD 156
           E   RAL G G +G     PP  G PF  G          + GG G   S D+ D     
Sbjct: 80  EARARALLGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDR---- 135

Query: 157 EDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENS 216
                 ++PET    G  E      G   RG G  GA + +A+  A    AA  G  E S
Sbjct: 136 ------DSPETGEEMGRAE------GAWPRGPG-PGAVQREAAELAARGPAA--GTEEAS 180

Query: 217 PVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALEN 276
            +A+ P       GG G                       G+ ++ RT F+  Q+  LE+
Sbjct: 181 ELAEVPAAAGETRGGVGVG--------------------GGRKKKTRTVFSRSQVFQLES 220

Query: 277 KFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ-----------NPGAD--T 323
            F   RYLS  ER  LA SL LTETQVKIWFQNRR KWK+Q            PGA    
Sbjct: 221 TFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLV 280

Query: 324 SAPTGGGGGP--GPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQ 381
             P      P     AGP   LP  L+P +P+PP    LG  G   YP         AA 
Sbjct: 281 RVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPL-LGFSGALAYPL---AAFPAAAS 336

Query: 382 LPFL 385
           +PFL
Sbjct: 337 VPFL 340


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score =  110 bits (274), Expect = 3e-24
 Identities = 108/315 (34%), Positives = 126/315 (40%), Gaps = 67/315 (21%)

Query: 73  ACAPCASAP-CAPAP---AASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEA 128
           +C+P +S P  APA    A S  PPR        L   G +GA G               
Sbjct: 57  SCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGG------------- 103

Query: 129 ETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGS 188
                 G   G GG    A  G                  AA  A  A  GG  LG    
Sbjct: 104 -----GGTGGGHGGPHHHAHPG--------------AAAAAAAAAAAAAAGGLALGLHPG 144

Query: 189 GCQGAAETDASP--------GATVDEAAA------PGPRENSPVAQGP-PGGAAAPG--G 231
           G QG A   A          G +   AAA      P    + P  QG  P   A P   G
Sbjct: 145 GAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLG 204

Query: 232 AGTTP------QGTATAAKPKRKRTGSDSKS---GKPRRARTAFTYEQLVALENKFKATR 282
           AGT          TA    PK     S ++S   GK RR RTAFT +QL+ LE++FK  +
Sbjct: 205 AGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNK 264

Query: 283 YLSVCERLNLALSLSLTETQVKIWFQNRRTKWK-----KQNPGADTSAPTGGGGGPGPGA 337
           YLS  +R  +A SL LTETQVKIWFQNRR KWK     K+    +     GGGGG G G 
Sbjct: 265 YLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGG 324

Query: 338 GPGTGLPGGLSPLSP 352
               G    L P +P
Sbjct: 325 AEEPGAEELLGPPAP 339



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 95  AEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVP 154
           A+E E++   G GG G  GAE P A +    G     D      G G         D   
Sbjct: 307 AQEAEKQK-GGGGGAGKGGAEEPGAEELL--GPPAPGD-----KGSGRRLRDLRDSDPEE 358

Query: 155 DDEDDDEDEAPETEAA 170
           D+++DDED  P +  A
Sbjct: 359 DEDEDDEDHFPYSNGA 374



 Score = 30.8 bits (68), Expect = 2.3
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 321 ADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPP 355
           A  ++ TGGGGG G  +G   G  G  SP S  PP
Sbjct: 35  AAAASGTGGGGGGGGASG---GTSGSCSPASSEPP 66



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 24/75 (32%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 169 AARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQ-----GPP 223
           AA G     GGGG  G     C  A  +   P A  D   A  P     +A        P
Sbjct: 37  AASGTGGGGGGGGASGGTSGSCSPA--SSEPPAAPADRLRAESPSPPRLLAAHCALLPKP 94

Query: 224 GGAAAPGGAGTTPQG 238
           G   A GG G T  G
Sbjct: 95  GFLGAGGGGGGTGGG 109


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score =  100 bits (250), Expect = 2e-21
 Identities = 118/422 (27%), Positives = 147/422 (34%), Gaps = 73/422 (17%)

Query: 13  AGAPPLAASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPA 72
           A A   AA+ T  A P G     P    RP                        G     
Sbjct: 106 AAAAAAAAAATATAGPRGEAPPPPPPTARP------------------------GERPDG 141

Query: 73  ACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETND 132
           A A  A+A  A A   + +  +A ++           GA    PP A D        T+ 
Sbjct: 142 AGAAAAAAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFVPPPPALDELGGPGGVTHP 201

Query: 133 TNGYS-SGGGGHSPSADSGDEVPDDE----DDDEDEAPETEAARGAEE--ARGGGGGLGA 185
                 +GG G +P+A  G    DDE    +D+EDE  E E     EE         L  
Sbjct: 202 EERLGVAGGPGSAPAAGGGTGTEDDEEELLEDEEDEDEEEELLEDDEEELLEDDARALLK 261

Query: 186 RGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP 245
               C  AA    +  A    A   G           P  A    G  +           
Sbjct: 262 EPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLS------- 314

Query: 246 KRKRTGSDSKSG----KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTET 301
                GSDS+ G    K RR RT FT  QL  LE  F+ T Y  V  R  LA+ L LTE 
Sbjct: 315 ----AGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEA 370

Query: 302 QVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPM--GAP 359
           +V++WFQNRR KW+K+      + P            PG   PG LS   P  P    +P
Sbjct: 371 RVQVWFQNRRAKWRKREKAGAQTHP------------PGLPFPGPLSATHPLSPYLDASP 418

Query: 360 LGMHGPAGYPAHGPGGLVCAAQLPFL------------SSPAVLSPFVLGSQTYGAPAFY 407
              H PA   A        AA  P L             +P  LS F LG+  +  PAF 
Sbjct: 419 FPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTF-LGAAVFRHPAFI 477

Query: 408 AP 409
           +P
Sbjct: 478 SP 479


>gi|4502365 NK3 homeobox 2 [Homo sapiens]
          Length = 333

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 102/306 (33%), Positives = 128/306 (41%), Gaps = 62/306 (20%)

Query: 43  TSFSVLDILDPNKFNSRRRRCVLLGPVA-PAACAPCASAPCAPAPAASGRPPRAEELERR 101
           TSFS+  IL     N +  R  L  P   PA     AS   APA                
Sbjct: 10  TSFSIQAIL-----NKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCW------------ 52

Query: 102 ALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDE 161
            L G    GA G     A D   A  A T    G ++     SP     D    +E++  
Sbjct: 53  RLFGERDAGALGG----AEDSLLASPAGTRTAAGRTA----ESPEGWDSDSALSEENESR 104

Query: 162 DEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDA---SPGATVDEAAAPGPRENSPV 218
               +   ARGA  A   GG L      C+ AA  D    + G +  E +A    + SP 
Sbjct: 105 RRCAD---ARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPR 161

Query: 219 AQ----GPPGG------AAAPGGAGTTPQGTA------TAAKPKRKRTGSDSKSGKPRRA 262
            +    GP G       + A GG G+ P G A       A KP++KR+            
Sbjct: 162 TEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS------------ 209

Query: 263 RTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 322
           R AF++ Q+  LE +F   RYLS  ER +LA SL LTETQVKIWFQNRR K K++   AD
Sbjct: 210 RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAAD 269

Query: 323 --TSAP 326
              SAP
Sbjct: 270 LLASAP 275


>gi|4758168 distal-less homeobox 2 [Homo sapiens]
          Length = 328

 Score = 96.3 bits (238), Expect = 5e-20
 Identities = 86/276 (31%), Positives = 126/276 (45%), Gaps = 52/276 (18%)

Query: 134 NGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGA 193
           +G  +G GG+S S+ S  +  +        A ++      +   GGGGG G       G+
Sbjct: 31  SGGGAGPGGNSSSSSSLHKPQESPTLPVSTATDSSYYTNQQHPAGGGGG-GGSPYAHMGS 89

Query: 194 AETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSD 253
            +  AS    V  +A    + +  +       + AP G  ++P       +P+++    +
Sbjct: 90  YQYQASGLNNVPYSA----KSSYDLGYTAAYTSYAPYGTSSSPANN----EPEKEDLEPE 141

Query: 254 SK--SGKP---RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQ 308
            +  +GKP   R+ RT ++  QL AL+ +F+ T+YL++ ER  LA SL LT+TQVKIWFQ
Sbjct: 142 IRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQ 201

Query: 309 NRRTKWKK----------QNPGADTSAP-------------------TGGGGGPGPGAGP 339
           NRR+K+KK          Q+PGA  S P                     GGGGPG G G 
Sbjct: 202 NRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVPQRMAGGGGPGSG-GS 260

Query: 340 GTGLPGGLSPLSPSPPMGAPLG----MHGPAGYPAH 371
           G G  G     SPS    A LG     H  +G  +H
Sbjct: 261 GAGSSGS----SPSSAASAFLGNYPWYHQTSGSASH 292



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 72  AACAPCASAPC-APAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAET 130
           +A  PCAS P  APA    G P R         +G  G G++G+ P +A   F       
Sbjct: 225 SASPPCASPPVSAPASWDFGVPQRMAGGGGPG-SGGSGAGSSGSSPSSAASAFLGNYPWY 283

Query: 131 NDTNGYSS 138
           + T+G +S
Sbjct: 284 HQTSGSAS 291


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 87/287 (30%), Positives = 122/287 (42%), Gaps = 44/287 (15%)

Query: 126 GEAETNDTNGYSSGGGGHSPSADSGD---EVPDDEDDDEDEAP-ETEAARGAE------- 174
           G ++T DT GYS+    + P A +     + P      +  AP    A +GAE       
Sbjct: 33  GYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMR 92

Query: 175 ----EARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPG 230
                ++GGGGG    G   +        P  T+  ++   P    P A+ P GG  A  
Sbjct: 93  PGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVP-AKKPKGGPNASS 151

Query: 231 GAGTTPQGTATAAKPKRKRT---------GSDSKSGKP-----RRARTAFTYEQLVALEN 276
            + T  +      K  R+ +         G   +   P     +R RTA+T  QLV LE 
Sbjct: 152 SSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEK 211

Query: 277 KFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ-----------NPGADTSA 325
           +F   RYL    R+ +A  L+LTE Q+KIWFQNRR K+KK            +   + S 
Sbjct: 212 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSP 271

Query: 326 PTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPL--GMHGPAGYPA 370
           P GG  G    +G    +P GL+  +PSPP  A     M+G A Y A
Sbjct: 272 PLGGAAGHVAYSGQLPPVP-GLAYDAPSPPAFAKSQPNMYGLAAYTA 317


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 78/233 (33%), Positives = 94/233 (40%), Gaps = 52/233 (22%)

Query: 198 ASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP------------ 245
           A+P A      AP P   +P A  PP  A+ P  A   P     A  P            
Sbjct: 97  AAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIF 156

Query: 246 --------KRKRTGSDSKSGKP-------------RRARTAFTYEQLVALENKFKATRYL 284
                     K+  S S SG+              +RARTA+T  QLV LE +F   RYL
Sbjct: 157 PWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYL 216

Query: 285 SVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLP 344
               R+ +A  L+LTE Q+KIWFQNRR K+KK   G      +GG         PG G  
Sbjct: 217 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAG-- 274

Query: 345 GGLS------------PLSPSPPMGAPLGMHG--PAGYPAHGPGGLVCAAQLP 383
           G L+            P SP P    P G +G  PA YPA  P    CA   P
Sbjct: 275 GYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPS---CAPPPP 324


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 78/233 (33%), Positives = 94/233 (40%), Gaps = 52/233 (22%)

Query: 198 ASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP------------ 245
           A+P A      AP P   +P A  PP  A+ P  A   P     A  P            
Sbjct: 97  AAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIF 156

Query: 246 --------KRKRTGSDSKSGKP-------------RRARTAFTYEQLVALENKFKATRYL 284
                     K+  S S SG+              +RARTA+T  QLV LE +F   RYL
Sbjct: 157 PWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYL 216

Query: 285 SVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLP 344
               R+ +A  L+LTE Q+KIWFQNRR K+KK   G      +GG         PG G  
Sbjct: 217 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAG-- 274

Query: 345 GGLS------------PLSPSPPMGAPLGMHG--PAGYPAHGPGGLVCAAQLP 383
           G L+            P SP P    P G +G  PA YPA  P    CA   P
Sbjct: 275 GYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPS---CAPPPP 324


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score = 92.4 bits (228), Expect = 7e-19
 Identities = 83/249 (33%), Positives = 103/249 (41%), Gaps = 43/249 (17%)

Query: 169 AARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAA 228
           A RGA  A+     LGAR + C  A E  + P      A AP      P     PG A  
Sbjct: 53  AERGARGAKERDRRLGARPA-CPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARP 111

Query: 229 PGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCE 288
             G    P G AT    + K +  +    K RR RT FT  QL  LE  F+ + Y  V  
Sbjct: 112 SPGL---PVGPATG---EAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 165

Query: 289 RLNLALSLSLTETQVKIWFQNRRTKWKKQ--------------------NPGADTSAP-- 326
           R  LA  ++L E +V++WFQNRR KW++Q                    +P + T +P  
Sbjct: 166 REELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLG 225

Query: 327 --TGGGGGPGPGAGP-----GTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCA 379
              G GGGP  GA P     G  LPGG +    S P   P     PA Y    P      
Sbjct: 226 AGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPP------ 279

Query: 380 AQLPFLSSP 388
              PFL+SP
Sbjct: 280 -PPPFLNSP 287


>gi|157426823 NK2 homeobox 4 [Homo sapiens]
          Length = 354

 Score = 92.0 bits (227), Expect = 9e-19
 Identities = 104/365 (28%), Positives = 132/365 (36%), Gaps = 60/365 (16%)

Query: 38  APLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEE 97
           +P   T FSV DIL P +   ++    + G  AP    P   AP   A A    PP    
Sbjct: 4   SPKHTTPFSVSDILSPIEETYKKFSGAMDG--AP----PGLGAPLGAAAAYRAPPPGPS- 56

Query: 98  LERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDE 157
                   +     AG +P +A     A  A        ++    H P   S        
Sbjct: 57  --------SQAATVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVS-------- 100

Query: 158 DDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSP 217
                + P            G  G L A   G +G A       AT    A P PR +S 
Sbjct: 101 -----QFPHGAMGSYCNGGLGNMGELPAYTDGMRGGA-------ATGWYGANPDPRYSSI 148

Query: 218 VA-QGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALEN 276
               GP  G    G    T  G A AAK       + + +   R+ R  F+  Q+  LE 
Sbjct: 149 SRFMGPSAGVNVAGMGSLT--GIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELER 206

Query: 277 KFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ--NPGADTSAPTGGGGGPG 334
           +FK  +YLS  ER +LA  + LT TQVKIWFQN R K K+Q  +  A      GG G P 
Sbjct: 207 RFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPP 266

Query: 335 PGA--------------------GPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPG 374
           P                      G  T  PG   P  P+P     L    P+    HGPG
Sbjct: 267 PPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPG 326

Query: 375 GLVCA 379
           G + A
Sbjct: 327 GGLAA 331


>gi|126090909 engrailed homeobox 1 [Homo sapiens]
          Length = 392

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 87/311 (27%), Positives = 120/311 (38%), Gaps = 26/311 (8%)

Query: 16  PPLAASDTVPAAPEG---------AGAARPAAPL-RPTSFSVLDILDPNKFNSRRRRCVL 65
           PPLA    +P  P           A   +PAA L R T+F + +IL P+ F  ++ +   
Sbjct: 66  PPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPD-FGCKKEQ--- 121

Query: 66  LGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKA 125
                     P      A A   +G   R E    +  AG   V   G   P A     A
Sbjct: 122 ---------PPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCA 172

Query: 126 GEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGA 185
            +A     +G      G   S                 A    AA    +  GGG G GA
Sbjct: 173 PDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGA 232

Query: 186 RGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP 245
              G QG    +    A +   +A G       +Q P      P     T      ++ P
Sbjct: 233 GSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQP---LVWPAWVYCTRYSDRPSSGP 289

Query: 246 KRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKI 305
           + ++        + +R RTAFT EQL  L+ +F+A RY++   R  LA  LSL E+Q+KI
Sbjct: 290 RTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKI 349

Query: 306 WFQNRRTKWKK 316
           WFQN+R K KK
Sbjct: 350 WFQNKRAKIKK 360


>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 88/307 (28%), Positives = 123/307 (40%), Gaps = 38/307 (12%)

Query: 20  ASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCAS 79
           A+ T  A P+      PA    P  FS+ ++L+        R      P      AP ++
Sbjct: 8   AAGTASAQPQPPPPPPPAPKESP--FSIKNLLN----GDHHRPPPKPQPPPRTLFAPASA 61

Query: 80  APCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYS-- 137
           A  A A AA+      E     AL+  G +     E P       A   E +    Y   
Sbjct: 62  AAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYT 121

Query: 138 -SGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAET 196
            +  GGH P  ++ ++         D +P +   R + E                     
Sbjct: 122 LTPAGGHLPRPEASEKALL-----RDSSPASGTDRDSPEPL------------------L 158

Query: 197 DASPGATVDEAAAPGP--RENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDS 254
            A P     ++ +P     E S   +    G AAPG AG +    A     +  + G++S
Sbjct: 159 KADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAES 218

Query: 255 KSGKP----RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNR 310
              KP    ++ RT F+  Q+  LE+ F   RYLS  ER  LA SL LTETQVKIWFQNR
Sbjct: 219 PEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNR 278

Query: 311 RTKWKKQ 317
           R KWK+Q
Sbjct: 279 RNKWKRQ 285


>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
          Length = 304

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 57/145 (39%), Positives = 73/145 (50%), Gaps = 18/145 (12%)

Query: 192 GAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP---KRK 248
           G  E  +SP      +++ G       +  P G A APG  G      A A K    KRK
Sbjct: 116 GPPELGSSPPVLCSNSSSLG-------SSTPTGAACAPGDYGRQALSPAEAEKRSGGKRK 168

Query: 249 RTGSDSKSG--------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTE 300
              SDS+ G        KPR+ RTAFT EQ+  LE +F    YL+   R  +A++L LTE
Sbjct: 169 SDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTE 228

Query: 301 TQVKIWFQNRRTKWKKQNPGADTSA 325
            QVK+WFQNRR KWK+   G   +A
Sbjct: 229 RQVKVWFQNRRMKWKRVKGGQQGAA 253


>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 73/217 (33%), Positives = 90/217 (41%), Gaps = 35/217 (16%)

Query: 207 AAAPGPRENSPVAQGPPGGAAAPGG----------AGTTPQGTATAAKPKRKRTGSDSKS 256
           A AP      P A  P G  AA                    +    K +  R  S S+ 
Sbjct: 110 ACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRD 169

Query: 257 G------KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNR 310
                  KPR+ARTAFT  QL  LE  F+  +YLSV +R+ LA SL+LT+TQVK W+QNR
Sbjct: 170 SPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNR 229

Query: 311 RTKWKKQNP-GADTSAPTGGGGG-----PGP---------GAGPGTGLPGGLSPLSPSPP 355
           RTKWK+Q   G +  A  G         P P            PG  L     P +P P 
Sbjct: 230 RTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPA 289

Query: 356 MGAPLG----MHGPAGYPAHGPGGLVCAAQLPFLSSP 388
           +  PL     +HG  G     P     A  LP  + P
Sbjct: 290 LQRPLVPRILIHGLQGASEPPPPLPPLAGVLPRAAQP 326


>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
          Length = 363

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 89/315 (28%), Positives = 122/315 (38%), Gaps = 57/315 (18%)

Query: 17  PLAASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAP 76
           PL     +  AP  AG   P APL   +  + +             C  LG   P+  A 
Sbjct: 54  PLVLPQALAPAPLPAGLP-PLAPLASFAGRLTNTF-----------CAGLGQAVPSMVAL 101

Query: 77  CASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGY 136
             + P    P  +   P     +  A A A     A    P  G     G  E ++    
Sbjct: 102 TTALPSFAEPPDAFYGP-----QELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPA 156

Query: 137 SSGGGGHSPS-----ADSGDEVPDD-----EDDDEDEAPETEAARGAEEARGGGGGLGAR 186
                   P      +++   +P +      D+++ EA   + A   +E  G GG     
Sbjct: 157 REKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGD---- 212

Query: 187 GSGCQGAAETDAS-PGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP 245
            S   G  ++ A  PGA +      GP+     + G      AP  AG T  G       
Sbjct: 213 -SEDDGFLDSSAGGPGALL------GPKPKLKGSLGTGAEEGAPVTAGVTAPG------- 258

Query: 246 KRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKI 305
                      GK RR RTAFT EQL+ LE +F   +YLS+ ER  +A +L L+E QVKI
Sbjct: 259 -----------GKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKI 307

Query: 306 WFQNRRTKWKKQNPG 320
           WFQNRR KWK+   G
Sbjct: 308 WFQNRRAKWKRIKAG 322


>gi|84570137 homeobox B3 [Homo sapiens]
          Length = 431

 Score = 88.6 bits (218), Expect = 9e-18
 Identities = 88/313 (28%), Positives = 120/313 (38%), Gaps = 77/313 (24%)

Query: 113 GAEPPNAGDPFKAGEAETNDTNGYSSGGGGHS---PSADSGDE-------VPDDEDDDED 162
           G+ PP+A        A T+ T+  S+GGG      P    G          P  ++  + 
Sbjct: 88  GSPPPSA--------APTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQT 139

Query: 163 EAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGP 222
              +  +   AE   GGGGG G  GSG  G                              
Sbjct: 140 SKLKNNSPGTAEGCGGGGGGGGGGGSGGSG------------------------------ 169

Query: 223 PGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATR 282
            GG    GG   +P G+A +                 +RARTA+T  QLV LE +F   R
Sbjct: 170 -GGGGGGGGGDKSPPGSAAS-----------------KRARTAYTSAQLVELEKEFHFNR 211

Query: 283 YLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTG 342
           YL    R+ +A  L+L+E Q+KIWFQNRR K+KK       ++ +GG    G    P   
Sbjct: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS 271

Query: 343 LPGGLSPL--------SPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPA-VLSP 393
             G ++ L        SPSPP       +  A    + P    C A   +  +PA    P
Sbjct: 272 TAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEP 331

Query: 394 FVLGSQ--TYGAP 404
            VL +    YG P
Sbjct: 332 HVLQANGGAYGTP 344


>gi|33457326 GS homeobox 1 [Homo sapiens]
          Length = 264

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 61/142 (42%), Positives = 77/142 (54%), Gaps = 10/142 (7%)

Query: 209 APGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGS-DSKSGK---PRRART 264
           AP  R++S V+ G   G AA   A    Q +     P++    S DS S +    +R RT
Sbjct: 93  APLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRMRT 152

Query: 265 AFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTS 324
           AFT  QL+ LE +F +  YLS   R+ +A  L+L+E QVKIWFQNRR K KK+  G   S
Sbjct: 153 AFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKG---S 209

Query: 325 APTGGGGGPGPGAGPGTGLPGG 346
              GGGGG   GAG G   P G
Sbjct: 210 NHRGGGGG---GAGGGGSAPQG 228


>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
          Length = 407

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 101/348 (29%), Positives = 126/348 (36%), Gaps = 81/348 (23%)

Query: 69  VAPAACAPCASAPCAPAPAASGRPPRAEELERRALAG-AGGVGAAGAEPPNAGDPFKAGE 127
           + P  C    + P A      G P      E   + G AG     GAEP  AG       
Sbjct: 42  MVPRGCLSPRAVPPATRERGGGGP------EEEPVDGLAGSAAGPGAEPQVAGAAML--- 92

Query: 128 AETNDTNGYSSGGGGHSPSADS--GDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGA 185
                      G G  +PS DS  G   P   D + D   E E +   + A G      +
Sbjct: 93  -----------GPGPPAPSVDSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHS 141

Query: 186 RGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP 245
           +GSG +                 +P     +P + G  GG    GG+    QGT      
Sbjct: 142 KGSGSEALV-------------GSPNGGSETPKSNGGSGG----GGS----QGTLAC--- 177

Query: 246 KRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKI 305
                   S S + RR RTAFT EQ+  LE +F    Y+S   R  LA +L+L ET +K+
Sbjct: 178 --------SASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKV 229

Query: 306 WFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPG--------TGLPGGLSPLSPSP-PM 356
           WFQNRR K K+Q        P          A P             GGL    P P P 
Sbjct: 230 WFQNRRMKDKRQRLAMTWPHP----------ADPAFYTYMMSHAAAAGGL----PYPFPS 275

Query: 357 GAPLGMHGPAGYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGSQTYGAP 404
             PL  + P G    G      AA  PF  S   L  F + SQ Y  P
Sbjct: 276 HLPLPYYSPVGL---GAASAASAAASPFSGSLRPLDTFRVLSQPYPRP 320


>gi|7710121 engrailed homeobox 2 [Homo sapiens]
          Length = 333

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 77/246 (31%), Positives = 99/246 (40%), Gaps = 30/246 (12%)

Query: 97  ELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDD 156
           E  RR  AG    GA G     AG     GE   +   G   G GG      SG   P  
Sbjct: 78  EFGRRKDAGTCCAGAGGGRGGGAG-----GEGGASGAEG-GGGAGGSEQLLGSGSREPRQ 131

Query: 157 EDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVD---EAAAPGPR 213
                  A     A G++    G GG  ++     G A+    PG  +D   +A   G  
Sbjct: 132 NPPCAPGAGGPLPAAGSDSPGDGEGG--SKTLSLHGGAKKGGDPGGPLDGSLKARGLGGG 189

Query: 214 ENSPVAQGPPGGAAAPGGA--------------GTTPQGTATAAKPKRKRTGSDSKSGKP 259
           + S  +      A A  GA                 P     + KPK+K    + K    
Sbjct: 190 DLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPRSRKPKKKNPNKEDK---- 245

Query: 260 RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 319
            R RTAFT EQL  L+ +F+  RYL+   R +LA  LSL E+Q+KIWFQN+R K KK   
Sbjct: 246 -RPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKIKKATG 304

Query: 320 GADTSA 325
             +T A
Sbjct: 305 NKNTLA 310


>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
          Length = 279

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 50/114 (43%), Positives = 62/114 (54%), Gaps = 8/114 (7%)

Query: 226 AAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLS 285
           A APGG       + T     R++        KPRR+RT FT  QL+ LE KF+  +YLS
Sbjct: 108 AEAPGGEALASSESETEQPTPRQK--------KPRRSRTIFTELQLMGLEKKFQKQKYLS 159

Query: 286 VCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGP 339
             +RL+LA SL LT+ QVK W+QNRR KWKK        APT   G P   + P
Sbjct: 160 TPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIP 213


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 73/262 (27%), Positives = 109/262 (41%), Gaps = 11/262 (4%)

Query: 68  PVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAG-----AGGVGAAGAEPP--NAG 120
           P+ PAA  P  + P + + ++S     +  L      G      GG+ + G+ P   +A 
Sbjct: 34  PLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAA 93

Query: 121 DPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGG 180
            P    +  +  +   +SG    S S                 +    AA  A  A    
Sbjct: 94  TPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSP 153

Query: 181 GGLGARGSGCQGAAETDASPGATVDEAAAPGP---RENSPVAQGPPGGAAA-PGGAGTTP 236
            GL A        +     PG     +AA      R   P+A+ P       PG   + P
Sbjct: 154 AGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPP 213

Query: 237 QGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSL 296
              A  A    + +    K GK +  R  F+ +Q+ ALE  F+ T+YL+  ER  LA SL
Sbjct: 214 WRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSL 273

Query: 297 SLTETQVKIWFQNRRTKWKKQN 318
            +TE+QVK+WFQNRRTKW+K++
Sbjct: 274 GMTESQVKVWFQNRRTKWRKKH 295



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 321 ADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGL 376
           A+   P      P   AGP +      S  SPSPP    LG H P G      GGL
Sbjct: 29  AEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSPSPP----LGTHNPGGLKPPATGGL 80


>gi|7657180 VENT homeobox [Homo sapiens]
          Length = 258

 Score = 85.5 bits (210), Expect = 8e-17
 Identities = 65/200 (32%), Positives = 86/200 (43%), Gaps = 11/200 (5%)

Query: 171 RGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPG 230
           RG ++    G       S C G   T     A     + PGP + S  A+ PP   +   
Sbjct: 9   RGPQQLSSFGSVDWLSQSSCSGPTHTPRP--ADFSLGSLPGPGQTSG-AREPPQAVSIKE 65

Query: 231 GAGTTPQGTATAAKPKRKRTGSDSKSGKPR--RARTAFTYEQLVALENKFKATRYLSVCE 288
            AG++         P+R   G   +    R  R RTAFT EQ+  LE  F+  +YLS  E
Sbjct: 66  AAGSS-----NLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE 120

Query: 289 RLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG-GGPGPGAGPGTGLPGGL 347
           R  LA  + L+E Q+K WFQNRR K K+Q       +P  G    P       +GL  GL
Sbjct: 121 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL 180

Query: 348 SPLSPSPPMGAPLGMHGPAG 367
             L P  P+  P  +  P G
Sbjct: 181 QLLCPWAPLSGPQALMLPPG 200


>gi|210147470 NK2 transcription factor related, locus 6 [Homo
           sapiens]
          Length = 219

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 73/200 (36%), Positives = 91/200 (45%), Gaps = 33/200 (16%)

Query: 223 PG-GAAAPGGAGTT--PQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFK 279
           PG  AA+P G GT    +G   +    R       K+ + R+ R  F+  Q++ALE +FK
Sbjct: 11  PGLNAASPLGGGTRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFK 70

Query: 280 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGG---------- 329
             RYLS  ER +LA +L LT TQVKIWFQNRR K K+Q    D S    G          
Sbjct: 71  QQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQR--QDKSLELAGHPLTPRRVAV 128

Query: 330 -----GGGPGPGAGPGTGLPGGLSPLSPSPPMGA--PLGMHGPAGYPAHGPGGLVCAAQL 382
                 G P  G GPG       +P  PSP   A  P   +G      +G G   C A  
Sbjct: 129 PVLVRDGKPCLGPGPG-------APAFPSPYSAAVSPYSCYGGYSGAPYGAGYGTCYAGA 181

Query: 383 PFLSSPAVLSPFVLGSQTYG 402
           P  S PA  +P  L S  +G
Sbjct: 182 P--SGPAPHTP--LASAGFG 197


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,577,961
Number of Sequences: 37866
Number of extensions: 1734115
Number of successful extensions: 29183
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 1362
Number of HSP's that attempted gapping in prelim test: 14093
Number of HSP's gapped (non-prelim): 12080
length of query: 411
length of database: 18,247,518
effective HSP length: 105
effective length of query: 306
effective length of database: 14,271,588
effective search space: 4367105928
effective search space used: 4367105928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.