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Search of human proteins with 239742053
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo
sapiens]
(311 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo ... 635 0.0
gi|239753510 PREDICTED: hypothetical protein [Homo sapiens] 561 e-160
gi|239748155 PREDICTED: hypothetical protein XP_002346540 [Homo ... 94 2e-19
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 37 0.029
gi|26051273 voltage-gated potassium channel, subfamily H, member... 35 0.085
gi|4557729 voltage-gated potassium channel, subfamily H, member ... 35 0.085
gi|239757587 PREDICTED: similar to Putative uncharacterized C21o... 33 0.32
gi|239752092 PREDICTED: hypothetical protein [Homo sapiens] 33 0.32
gi|239746589 PREDICTED: hypothetical protein XP_002343791 [Homo ... 33 0.32
gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens] 33 0.32
gi|161353481 zinc finger protein 187 isoform a [Homo sapiens] 31 1.2
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 30 2.1
gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Ho... 30 2.1
gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Ho... 30 2.1
gi|161353483 zinc finger protein 187 isoform b [Homo sapiens] 30 2.1
gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo sapi... 30 2.7
gi|45505161 leukocyte specific transcript 1 isoform 2 [Homo sapi... 30 2.7
gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo sapi... 30 2.7
gi|41349446 stromal interaction molecule 2 [Homo sapiens] 30 2.7
gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo sa... 30 2.7
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 30 3.6
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 30 3.6
gi|4503301 2,4-dienoyl CoA reductase 1 precursor [Homo sapiens] 30 3.6
gi|223468693 hypothetical protein LOC100130361 [Homo sapiens] 29 6.1
gi|223468690 hypothetical protein LOC100132994 [Homo sapiens] 29 6.1
gi|169215211 PREDICTED: hypothetical protein [Homo sapiens] 29 6.1
gi|89058383 PREDICTED: hypothetical protein [Homo sapiens] 29 6.1
gi|89058207 PREDICTED: hypothetical protein [Homo sapiens] 29 6.1
gi|110832843 TBP-associated factor 4 [Homo sapiens] 29 6.1
gi|122937223 NOBOX oogenesis homeobox [Homo sapiens] 29 6.1
>gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo
sapiens]
Length = 311
Score = 635 bits (1639), Expect = 0.0
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH 60
MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH
Sbjct: 1 MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH 60
Query: 61 MSLLTDCDDSSRACSKAPTCDGALQSRLKGLCTQKQGGGRGLGAGSKRLHRPPGFQCAFQ 120
MSLLTDCDDSSRACSKAPTCDGALQSRLKGLCTQKQGGGRGLGAGSKRLHRPPGFQCAFQ
Sbjct: 61 MSLLTDCDDSSRACSKAPTCDGALQSRLKGLCTQKQGGGRGLGAGSKRLHRPPGFQCAFQ 120
Query: 121 NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLPSSWENTQPHVQLS 180
NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLPSSWENTQPHVQLS
Sbjct: 121 NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLPSSWENTQPHVQLS 180
Query: 181 LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE 240
LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE
Sbjct: 181 LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE 240
Query: 241 SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ 300
SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ
Sbjct: 241 SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ 300
Query: 301 SQSPPPGRHRP 311
SQSPPPGRHRP
Sbjct: 301 SQSPPPGRHRP 311
>gi|239753510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 561 bits (1445), Expect = e-160
Identities = 283/311 (90%), Positives = 283/311 (90%), Gaps = 27/311 (8%)
Query: 1 MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH 60
MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH
Sbjct: 1 MVQMEEVLNTGHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQPELH 60
Query: 61 MSLLTDCDDSSRACSKAPTCDGALQSRLKGLCTQKQGGGRGLGAGSKRLHRPPGFQCAFQ 120
MSLLTDCDDSSRACSKAPTCDGALQSRLK CAFQ
Sbjct: 61 MSLLTDCDDSSRACSKAPTCDGALQSRLK---------------------------CAFQ 93
Query: 121 NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLPSSWENTQPHVQLS 180
NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLP SWENTQPHVQLS
Sbjct: 94 NSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLPLSWENTQPHVQLS 153
Query: 181 LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE 240
LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE
Sbjct: 154 LDTGKQDTGRSPGLPLRLAVFQEELALTAALGEQQGRDERVSTAFRHRASLKLREHKPGE 213
Query: 241 SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ 300
SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ
Sbjct: 214 SCSQRPRSHKAACRAAALFLEQRTGTVSMSMMVLGLSRRKTMGHANLGGIKATWACQKSQ 273
Query: 301 SQSPPPGRHRP 311
SQSPPPGRHRP
Sbjct: 274 SQSPPPGRHRP 284
>gi|239748155 PREDICTED: hypothetical protein XP_002346540 [Homo
sapiens]
Length = 43
Score = 94.0 bits (232), Expect = 2e-19
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 269 MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 311
MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP
Sbjct: 1 MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 43
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 36.6 bits (83), Expect = 0.029
Identities = 48/143 (33%), Positives = 56/143 (39%), Gaps = 22/143 (15%)
Query: 34 ELRAGKDKSPL--CLGILPTSPTGQPELHMSLLTDCDDSSRACSKAPTCDGALQSRL--- 88
E A ++ PL L LP PT QP L T DSS CS PT DG S L
Sbjct: 103 EAAAAREPCPLRGLLSCLPDGPTSQPH----LATTPTDSS--CSSGPTGDGVQGSPLPIK 156
Query: 89 ---KGLCTQKQGGGRGLGAGSKRLHRPPGFQCAFQNSSLGPLRTLCKQLHESVGQLPKVL 145
K T+K+G G G S H P + + S G R + S G P
Sbjct: 157 TADKPWPTRKEGPGALGGEPSPPTHSP-----SRRKSHRGQERG-TSEAGISPGNSPLQG 210
Query: 146 RIELLVEALLTSKPPAHPSHLPS 168
I L E L+ P HP PS
Sbjct: 211 LINCLKEILVPG--PRHPETSPS 231
>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
isoform c [Homo sapiens]
Length = 819
Score = 35.0 bits (79), Expect = 0.085
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 11 GHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTS---PTGQPELHMSLLTDC 67
G P GP + P+ GP + + E G+ SPL L +P S P G+P L+ DC
Sbjct: 581 GRPGGPWGESPSSGPSSPESSEDE-GPGRSSSPLRL--VPFSSPRPPGEPPGGEPLMEDC 637
Query: 68 DDSSRACS 75
+ SS C+
Sbjct: 638 EKSSDTCN 645
>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
isoform a [Homo sapiens]
Length = 1159
Score = 35.0 bits (79), Expect = 0.085
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 11 GHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTS---PTGQPELHMSLLTDC 67
G P GP + P+ GP + + E G+ SPL L +P S P G+P L+ DC
Sbjct: 921 GRPGGPWGESPSSGPSSPESSEDE-GPGRSSSPLRL--VPFSSPRPPGEPPGGEPLMEDC 977
Query: 68 DDSSRACS 75
+ SS C+
Sbjct: 978 EKSSDTCN 985
>gi|239757587 PREDICTED: similar to Putative uncharacterized
C21orf104 protein [Homo sapiens]
Length = 265
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 131 CKQLHESVGQLPKVL--RIELLVEALLTSKPPAHPSHLPSS 169
C QLH Q+P++ R+ L EAL S+PP P P +
Sbjct: 221 CPQLHPRTAQIPQIAVKRVSLCSEALSNSEPPRVPDPAPGN 261
>gi|239752092 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 131 CKQLHESVGQLPKVL--RIELLVEALLTSKPPAHPSHLPSS 169
C QLH Q+P++ R+ L EAL S+PP P P +
Sbjct: 221 CPQLHPRTAQIPQIAVKRVSLCSEALSNSEPPRVPDPAPGN 261
>gi|239746589 PREDICTED: hypothetical protein XP_002343791 [Homo
sapiens]
Length = 265
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 131 CKQLHESVGQLPKVL--RIELLVEALLTSKPPAHPSHLPSS 169
C QLH Q+P++ R+ L EAL S+PP P P +
Sbjct: 221 CPQLHPRTAQIPQIAVKRVSLCSEALSNSEPPRVPDPAPGN 261
>gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]
Length = 1263
Score = 33.1 bits (74), Expect = 0.32
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 126 PLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPS-HLPSSWENTQPHVQLSL--D 182
PL+ C+ + + LRI+ +S PP HP+ HL N+ P + ++
Sbjct: 648 PLQAACENQPALLTHQLQRLRIQP------SSPPPNHPNNHLFRQPSNSPPPMSSAMIQP 701
Query: 183 TGKQDTGRSPGLPLRLAVFQEE---------LALTAALGEQQGRDERVSTAFRHRASLKL 233
G + + GLP R A+FQ++ +ALT +Q + ++V+ + + + +
Sbjct: 702 HGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQSQQVT--IQVQEPVDM 759
Query: 234 REHKPGESCSQRPRSHKAACRAAALFLEQRTGTVS 268
+ PG + R + A + ++ RT ++
Sbjct: 760 LSNMPGTAAGSSGRGISISPSAGQMQMQHRTNLMA 794
>gi|161353481 zinc finger protein 187 isoform a [Homo sapiens]
Length = 479
Score = 31.2 bits (69), Expect = 1.2
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
Query: 96 QGGGRGLGAGS--KRLHRPPGFQCAFQNSSLGPLRTLCKQLHESVGQLPKVLRIELLVEA 153
QG +GLG K+ + + +L LR LC+Q + + + L++E
Sbjct: 39 QGNSKGLGQEPLCKQFRQLRYEETTGPREALSRLRELCQQWLQPETHTKEQILELLVLEQ 98
Query: 154 LLTSKPPAHPS----HLPSSWENTQPHVQ-LSLDTGKQDTGRSPGLPLRLAVFQEELALT 208
L P + H P S E+ ++ L LD G+ P P + + EE+A
Sbjct: 99 FLIILPKELQARVQEHHPESREDVVVVLEDLQLDLGETGQQVDPDQPKKQKILVEEMAPL 158
Query: 209 AALGEQQGRDE 219
+ EQQ R E
Sbjct: 159 KGVQEQQVRHE 169
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 30.4 bits (67), Expect = 2.1
Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 25/106 (23%)
Query: 8 LNTGHPWGPSTQGPAL--------------GPVLADLRQAELRAGKDKSPLCLGILPTSP 53
L G PW P GPAL P L + RAG P G LP
Sbjct: 86 LAAGSPWRPWRPGPALAGALRFPGAHGRLCAPPPPGLGLGQGRAGAGLRPRGAGSLPLPC 145
Query: 54 TGQ---PELHMSLLTDCDDSSRACSKAPTCDGALQSRLKGLCTQKQ 96
T + P+L S TD R C++ GAL+ GL Q Q
Sbjct: 146 TARLPAPQLGTSSTTD-----RPCARPTAPRGALRD---GLAAQPQ 183
>gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Homo
sapiens]
Length = 602
Score = 30.4 bits (67), Expect = 2.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 2 VQMEEVLNTGHPWGPSTQGPALGPVLAD-----LRQAELRAGKDKSPLCLGI 48
V + VL++ HPWGP T G L V A +AE R G + L L +
Sbjct: 300 VLQDRVLSSSHPWGPRTLGLELRGVRAGDSGRYTCRAENRLGSQQQALDLSV 351
>gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Homo
sapiens]
Length = 698
Score = 30.4 bits (67), Expect = 2.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 2 VQMEEVLNTGHPWGPSTQGPALGPVLAD-----LRQAELRAGKDKSPLCLGI 48
V + VL++ HPWGP T G L V A +AE R G + L L +
Sbjct: 300 VLQDRVLSSSHPWGPRTLGLELRGVRAGDSGRYTCRAENRLGSQQQALDLSV 351
>gi|161353483 zinc finger protein 187 isoform b [Homo sapiens]
Length = 478
Score = 30.4 bits (67), Expect = 2.1
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 96 QGGGRGLGAGS--KRLHRPPGFQCAFQNSSLGPLRTLCKQLHESVGQLPKVLRIELLVEA 153
QG +GLG K+ + + +L LR LC+Q + + + L++E
Sbjct: 39 QGNSKGLGQEPLCKQFRQLRYEETTGPREALSRLRELCQQWLQPETHTKEQILELLVLEQ 98
Query: 154 LLTSKPPAHPS----HLPSSWENTQ---PHVQLSL-DTGKQDTGRSPGLPLRLAVFQEEL 205
L P + H P S E+ +QL L +TG+QD P P + + EE+
Sbjct: 99 FLIILPKELQARVQEHHPESREDVVVVLEDLQLDLGETGQQD----PDQPKKQKILVEEM 154
Query: 206 ALTAALGEQQGRDE 219
A + EQQ R E
Sbjct: 155 APLKGVQEQQVRHE 168
>gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo
sapiens]
Length = 63
Score = 30.0 bits (66), Expect = 2.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 148 ELLVEALLTSKPPAHPSHLP 167
EL + ALL + PP HP HLP
Sbjct: 30 ELTMPALLRTNPPEHPRHLP 49
>gi|45505161 leukocyte specific transcript 1 isoform 2 [Homo
sapiens]
Length = 75
Score = 30.0 bits (66), Expect = 2.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 148 ELLVEALLTSKPPAHPSHLP 167
EL + ALL + PP HP HLP
Sbjct: 42 ELTMPALLRTNPPEHPRHLP 61
>gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo
sapiens]
Length = 118
Score = 30.0 bits (66), Expect = 2.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 148 ELLVEALLTSKPPAHPSHLP 167
EL + ALL + PP HP HLP
Sbjct: 85 ELTMPALLRTNPPEHPRHLP 104
>gi|41349446 stromal interaction molecule 2 [Homo sapiens]
Length = 833
Score = 30.0 bits (66), Expect = 2.7
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 111 RPPGFQCAFQNSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKP--PAHPSHLPS 168
+PPG SL +LC+ V P+ R +L A S P P HP H P
Sbjct: 588 KPPG--------SLARSSSLCRSRRSIVPSSPQPQRAQLAPHAPHPSHPRHPHHPQHTPH 639
Query: 169 SWENTQPHV 177
S + P +
Sbjct: 640 SLPSPDPDI 648
>gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo
sapiens]
Length = 554
Score = 30.0 bits (66), Expect = 2.7
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 123 SLGPLRTLCKQLHESVGQLPKVLRIELLVEALLTSKPPAHPSHLPSSW-------ENTQP 175
S+ + T KQL +SV P ++R+ L + S+P + LP E
Sbjct: 363 SVTDVTTKAKQLKDSVTCSPGMVRLSELKSTVQNSRPIKTATTLPDDMITQREDAEGVAA 422
Query: 176 HVQLSLDTGKQDTGRSPGLPLR 197
+ D+G+Q+TG + P R
Sbjct: 423 EEEQEGDSGEQETGATDARPRR 444
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 29.6 bits (65), Expect = 3.6
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 97 GGGRGLGAGSKRLHRPPGFQCAFQNSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLT 156
GGG G G GS PPG FQ + + LR+ + ++S G P +L +
Sbjct: 82 GGGGGGGGGSFGGGGPPGLGGLFQ-AGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKP 140
Query: 157 SKPPAHPSHLP 167
PP+ P P
Sbjct: 141 FSPPSGPGRFP 151
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 29.6 bits (65), Expect = 3.6
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 97 GGGRGLGAGSKRLHRPPGFQCAFQNSSLGPLRTLCKQLHESVGQLPKVLRIELLVEALLT 156
GGG G G GS PPG FQ + + LR+ + ++S G P +L +
Sbjct: 82 GGGGGGGGGSFGGGGPPGLGGLFQ-AGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKP 140
Query: 157 SKPPAHPSHLP 167
PP+ P P
Sbjct: 141 FSPPSGPGRFP 151
>gi|4503301 2,4-dienoyl CoA reductase 1 precursor [Homo sapiens]
Length = 335
Score = 29.6 bits (65), Expect = 3.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 97 GGGRGLGAGSKRLHRPPGFQCAFQNSSLGPLRTLCKQLHESVG 139
GGG GLG G L G QC + + L+ +Q+ G
Sbjct: 66 GGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG 108
>gi|223468693 hypothetical protein LOC100130361 [Homo sapiens]
Length = 514
Score = 28.9 bits (63), Expect = 6.1
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 31 RQAELRAGKDKSPLCLGILPTSPTG-QPELHMSLLTDCDDS------SRACSKA---PTC 80
RQA + P+ L ++P G P + + +DS SRA K P+C
Sbjct: 241 RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC 300
Query: 81 DGALQSRL--KGLCTQKQGGGRGLGAGSKRLHRPPGFQCAFQNSSLGP 126
GA + +GL +K GG+ G+ +L GF + S P
Sbjct: 301 SGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAP 348
>gi|223468690 hypothetical protein LOC100132994 [Homo sapiens]
Length = 514
Score = 28.9 bits (63), Expect = 6.1
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 31 RQAELRAGKDKSPLCLGILPTSPTG-QPELHMSLLTDCDDS------SRACSKA---PTC 80
RQA + P+ L ++P G P + + +DS SRA K P+C
Sbjct: 241 RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC 300
Query: 81 DGALQSRL--KGLCTQKQGGGRGLGAGSKRLHRPPGFQCAFQNSSLGP 126
GA + +GL +K GG+ G+ +L GF + S P
Sbjct: 301 SGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAP 348
>gi|169215211 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 28.9 bits (63), Expect = 6.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 51 TSPTGQPELHMSLLTDCDDSSRA-------CSKAPTCDGALQSRLKGL-CTQ--KQGGGR 100
TSP+ PE+H CD ++R+ A +CD + +++ L C Q QGG
Sbjct: 70 TSPSLAPEIHHFCRLFCDATTRSHLGSADPSGFAASCD--VSAKISSLVCKQLHSQGGSS 127
Query: 101 GLGAGS 106
GL AG+
Sbjct: 128 GLSAGA 133
>gi|89058383 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 28.9 bits (63), Expect = 6.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 51 TSPTGQPELHMSLLTDCDDSSRA-------CSKAPTCDGALQSRLKGL-CTQ--KQGGGR 100
TSP+ PE+H CD ++R+ A +CD + +++ L C Q QGG
Sbjct: 70 TSPSLAPEIHHFCRLFCDATTRSHLGSADPSGFAASCD--VSAKISSLVCKQLHSQGGSS 127
Query: 101 GLGAGS 106
GL AG+
Sbjct: 128 GLSAGA 133
>gi|89058207 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 28.9 bits (63), Expect = 6.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 51 TSPTGQPELHMSLLTDCDDSSRA-------CSKAPTCDGALQSRLKGL-CTQ--KQGGGR 100
TSP+ PE+H CD ++R+ A +CD + +++ L C Q QGG
Sbjct: 70 TSPSLAPEIHHFCRLFCDATTRSHLGSADPSGFAASCD--VSAKISSLVCKQLHSQGGSS 127
Query: 101 GLGAGS 106
GL AG+
Sbjct: 128 GLSAGA 133
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 28.9 bits (63), Expect = 6.1
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 11 GHPWGPSTQGPALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQP 57
GHP GP T PA+ P A A +P G P +GQP
Sbjct: 285 GHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGG--PAGVSGQP 329
>gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]
Length = 490
Score = 28.9 bits (63), Expect = 6.1
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 16 PSTQGP----ALGPVLADLRQAELRAGKDKSPLCLGILPTSPTGQP 57
P TQG +G V R GK K P +G+ PTS G P
Sbjct: 178 PQTQGEDCSLPVGEVKIGKRSYSPAPGKQKKPNAMGLAPTSSPGAP 223
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,544,432
Number of Sequences: 37866
Number of extensions: 723963
Number of successful extensions: 2376
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2359
Number of HSP's gapped (non-prelim): 37
length of query: 311
length of database: 18,247,518
effective HSP length: 102
effective length of query: 209
effective length of database: 14,385,186
effective search space: 3006503874
effective search space used: 3006503874
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.