Guide to the Human Genome
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Name: DDX50 Sequence: fasta or formatted (737aa) NCBI GI: 13129006
Description:

nucleolar protein GU2

Referenced in:

DEAD / H Helicase Family
Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         43           3
 C cysteine            1.4         10           1
 D aspartate           6.0         44           2
 E glutamate           7.3         54           2
 F phenylalanine       3.1         23           2
 G glycine             7.6         56           2
 H histidine           2.2         16           2
 I isoleucine          5.2         38           2
 K lysine              7.7         57           2
 L leucine             7.5         55           2
 M methionine          1.8         13           1
 N asparagine          3.0         22           1
 P proline             3.4         25           2
 Q glutamine           5.0         37           1
 R arginine            8.1         60           3
 S serine             10.7         79           2
 T threonine           5.3         39           2
 V valine              5.7         42           2
 W tryptophan          0.9          7           1
 Y tyrosine            2.3         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleolar protein GU2 
DDX21                 0.551   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
DDX17                 0.126   DEAD box polypeptide 17 isoform 3 
DDX17                 0.126   DEAD box polypeptide 17 isoform 1 
DDX5                  0.120   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX43                 0.119   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX4                  0.119   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.119   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.119   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX46                 0.118   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX18                 0.115   DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 
DDX53                 0.111   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
EIF4A1                0.111   eukaryotic translation initiation factor 4A isoform 1...
DDX3X                 0.111   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX23                 0.109   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX3Y                 0.109   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.109   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX42                 0.108   DEAD box polypeptide 42 protein 
DDX42                 0.108   DEAD box polypeptide 42 protein 
DDX27                 0.108   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
EIF4A2                0.107   eukaryotic translation initiation factor 4A2 
EIF4A3                0.106   eukaryotic translation initiation factor 4A, isoform ...
DDX10                 0.106   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
DDX41                 0.105   DEAD-box protein abstrakt 
DDX54                 0.100   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.100   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX6                  0.098   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX47                 0.098   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX59                 0.092   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX55                 0.090   DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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