Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TMC8 Sequence: fasta or formatted (726aa) NCBI GI: 23943900
Description:

transmembrane channel-like 8

Referenced in:

Auditory and Vestibular Functions
Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         48           2
 C cysteine            2.5         18           1
 D aspartate           1.7         12           1
 E glutamate           4.8         35           2
 F phenylalanine       5.5         40           3
 G glycine             7.0         51           2
 H histidine           1.4         10           1
 I isoleucine          2.8         20           1
 K lysine              2.6         19           2
 L leucine            16.5        120           4
 M methionine          1.2          9           2
 N asparagine          2.8         20           1
 P proline             7.3         53           2
 Q glutamine           5.0         36           3
 R arginine            7.3         53           3
 S serine              8.0         58           3
 T threonine           4.3         31           1
 V valine              7.0         51           2
 W tryptophan          2.5         18           1
 Y tyrosine            3.3         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane channel-like 8 
TMC7                  0.235   transmembrane channel-like 7 isoform a 
TMC7                  0.233   transmembrane channel-like 7 isoform b 
TMC4                  0.212   transmembrane channel-like 4 isoform 2 
TMC4                  0.212   transmembrane channel-like 4 isoform 1 
TMC5                  0.119   transmembrane channel-like 5 isoform a 
TMC5                  0.119   transmembrane channel-like 5 isoform c 
TMC5                  0.112   transmembrane channel-like 5 isoform b 
TMC6                  0.101   transmembrane channel-like 6 
TMC6                  0.101   transmembrane channel-like 6 
TMC2                  0.089   transmembrane cochlear-expressed protein 2 
TMC1                  0.088   transmembrane channel-like 1 
TMC3                  0.057   transmembrane channel-like 3 
COL17A1               0.010   alpha 1 type XVII collagen 
SAMD1                 0.010   sterile alpha motif domain containing 1 
C1QL4                 0.010   complement component 1, q subcomponent-like 4 
NOTCH3                0.009   Notch homolog 3 
COL3A1                0.009   collagen type III alpha 1 preproprotein 
COL7A1                0.008   alpha 1 type VII collagen precursor 
RAB11FIP3             0.008   rab11-family interacting protein 3 isoform 1 
COL4A4                0.008   alpha 4 type IV collagen precursor 
ZNF385A               0.008   zinc finger protein 385A isoform a 
ZNF385A               0.008   zinc finger protein 385A isoform c 
COL8A2                0.008   collagen, type VIII, alpha 2 
COL14A1               0.008   collagen, type XIV, alpha 1 
TBKBP1                0.008   TBK1 binding protein 1 
LDB3                  0.007   LIM domain binding 3 isoform 1 
COL13A1               0.007   alpha 1 type XIII collagen isoform 20 
COL13A1               0.007   alpha 1 type XIII collagen isoform 19 
COL13A1               0.007   alpha 1 type XIII collagen isoform 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press