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Search of human proteins with 116006949
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116006949 hypothetical protein LOC196792 [Homo sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116006949 hypothetical protein LOC196792 [Homo sapiens] 200 2e-52
gi|71274136 family with sequence similarity 24, member A [Homo s... 141 1e-34
gi|55741571 leucine rich repeat and fibronectin type III domain ... 30 0.54
gi|31542244 leucine rich repeat and fibronectin type III domain ... 28 2.1
gi|4505245 mannose receptor C type 1 precursor [Homo sapiens] 27 2.7
gi|73915096 gamma-glutamyltransferase 1 precursor [Homo sapiens] 27 2.7
gi|73915094 gamma-glutamyltransferase 1 precursor [Homo sapiens] 27 2.7
gi|73915092 gamma-glutamyltransferase 1 precursor [Homo sapiens] 27 2.7
gi|73915090 gamma-glutamyltransferase 1 precursor [Homo sapiens] 27 2.7
gi|113429324 PREDICTED: gamma-glutamyltransferase 2 isoform 3 [H... 27 2.7
gi|113429326 PREDICTED: gamma-glutamyltransferase 2 isoform 1 [H... 27 2.7
gi|223029476 NEL-like protein 2 isoform d [Homo sapiens] 27 2.7
gi|223029474 NEL-like protein 2 isoform c [Homo sapiens] 27 2.7
gi|223029472 NEL-like protein 2 isoform b precursor [Homo sapiens] 27 2.7
gi|223029470 NEL-like protein 2 isoform a [Homo sapiens] 27 2.7
gi|5453766 NEL-like protein 2 isoform b precursor [Homo sapiens] 27 2.7
gi|57546917 mannose receptor, C type 1-like 1 [Homo sapiens] 27 2.7
gi|241896926 protein tyrosine phosphatase, receptor type, H isof... 27 3.5
gi|241896924 protein tyrosine phosphatase, receptor type, H isof... 27 3.5
gi|55770882 keratin 37 [Homo sapiens] 27 4.6
gi|13375646 leucine rich repeat and fibronectin type III domain ... 27 4.6
gi|219689132 solute carrier family 38, member 4 [Homo sapiens] 27 4.6
gi|18482385 solute carrier family 38, member 4 [Homo sapiens] 27 4.6
gi|153792230 hypothetical protein LOC57670 [Homo sapiens] 27 4.6
gi|62548866 integrin, alpha D precursor [Homo sapiens] 27 4.6
gi|222418615 integrin alpha 7 isoform 3 [Homo sapiens] 26 6.0
gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens] 26 6.0
gi|222418611 integrin alpha 7 isoform 2 precursor [Homo sapiens] 26 6.0
gi|89030143 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 26 6.0
>gi|116006949 hypothetical protein LOC196792 [Homo sapiens]
Length = 94
Score = 200 bits (509), Expect = 2e-52
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MPVIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNHNPDKVWWAKNSQAKTI 60
MPVIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNHNPDKVWWAKNSQAKTI
Sbjct: 1 MPVIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNHNPDKVWWAKNSQAKTI 60
Query: 61 ATESCPALQCCEGYRMCASFDSLPPCCCDINEGL 94
ATESCPALQCCEGYRMCASFDSLPPCCCDINEGL
Sbjct: 61 ATESCPALQCCEGYRMCASFDSLPPCCCDINEGL 94
>gi|71274136 family with sequence similarity 24, member A [Homo
sapiens]
Length = 105
Score = 141 bits (355), Expect = 1e-34
Identities = 65/91 (71%), Positives = 73/91 (80%)
Query: 4 IAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNHNPDKVWWAKNSQAKTIATE 63
I +L A ++L+ VV CLYFK+ ALKAAK+P+AVAVKNHNPDKV WA NSQAK E
Sbjct: 15 IGSSLLVAAMVLLSVVFCLYFKVAKALKAAKDPDAVAVKNHNPDKVCWATNSQAKATTME 74
Query: 64 SCPALQCCEGYRMCASFDSLPPCCCDINEGL 94
SCP+LQCCEG RM AS DSLPPCCCDINEGL
Sbjct: 75 SCPSLQCCEGCRMHASSDSLPPCCCDINEGL 105
>gi|55741571 leucine rich repeat and fibronectin type III domain
containing 2 [Homo sapiens]
Length = 789
Score = 29.6 bits (65), Expect = 0.54
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 1 MPVIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVA 40
M ++ GGI+ A LL+ +V+L + +K+ N +K AV+
Sbjct: 534 MILVIGGIIVATLLVFIVILMVRYKVCNHEAPSKMAAAVS 573
>gi|31542244 leucine rich repeat and fibronectin type III domain
containing 5 [Homo sapiens]
Length = 719
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 1 MPVIAGGILAALLLLIVVVLCLYFKIHN 28
M +I GGI+ A +L+ +++L + +K+ N
Sbjct: 529 MIIIIGGIIVASVLVFIIILMIRYKVCN 556
>gi|4505245 mannose receptor C type 1 precursor [Homo sapiens]
Length = 1456
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 3 VIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNHNPD----KVWWAKNSQAK 58
V A I A+LLL +Y + H A P AV N D K W SQ
Sbjct: 8 VFASVIPGAVLLLDTRQFLIYNEDHKRCVDAVSPSAVQTAACNQDAESQKFRWVSESQIM 67
Query: 59 TIATESC 65
++A + C
Sbjct: 68 SVAFKLC 74
>gi|73915096 gamma-glutamyltransferase 1 precursor [Homo sapiens]
Length = 569
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 7 GILAALLLLIVVVLCLYFKIHNALKAAKEPE 37
G+LA +L+L++V LCL+ A+KEP+
Sbjct: 9 GLLAVVLVLVIVGLCLWLP-----SASKEPD 34
>gi|73915094 gamma-glutamyltransferase 1 precursor [Homo sapiens]
Length = 569
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 7 GILAALLLLIVVVLCLYFKIHNALKAAKEPE 37
G+LA +L+L++V LCL+ A+KEP+
Sbjct: 9 GLLAVVLVLVIVGLCLWLP-----SASKEPD 34
>gi|73915092 gamma-glutamyltransferase 1 precursor [Homo sapiens]
Length = 569
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 7 GILAALLLLIVVVLCLYFKIHNALKAAKEPE 37
G+LA +L+L++V LCL+ A+KEP+
Sbjct: 9 GLLAVVLVLVIVGLCLWLP-----SASKEPD 34
>gi|73915090 gamma-glutamyltransferase 1 precursor [Homo sapiens]
Length = 569
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 7 GILAALLLLIVVVLCLYFKIHNALKAAKEPE 37
G+LA +L+L++V LCL+ A+KEP+
Sbjct: 9 GLLAVVLVLVIVGLCLWLP-----SASKEPD 34
>gi|113429324 PREDICTED: gamma-glutamyltransferase 2 isoform 3
[Homo sapiens]
Length = 569
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 7 GILAALLLLIVVVLCLYFKIHNALKAAKEPE 37
G+LA +L+L++V LCL+ A+KEP+
Sbjct: 9 GLLAVVLVLVIVGLCLWLP-----SASKEPD 34
>gi|113429326 PREDICTED: gamma-glutamyltransferase 2 isoform 1
[Homo sapiens]
Length = 574
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 7 GILAALLLLIVVVLCLYFKIHNALKAAKEPE 37
G+LA +L+L++V LCL+ A+KEP+
Sbjct: 9 GLLAVVLVLVIVGLCLWLP-----SASKEPD 34
>gi|223029476 NEL-like protein 2 isoform d [Homo sapiens]
Length = 839
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 53 KNSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDINEG 93
K+ K + + CPAL C E +++ +L CC + +G
Sbjct: 385 KDQTMKLVESSGCPALDCPESHQI-----TLSHSCCKVCKG 420
>gi|223029474 NEL-like protein 2 isoform c [Homo sapiens]
Length = 815
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 53 KNSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDINEG 93
K+ K + + CPAL C E +++ +L CC + +G
Sbjct: 361 KDQTMKLVESSGCPALDCPESHQI-----TLSHSCCKVCKG 396
>gi|223029472 NEL-like protein 2 isoform b precursor [Homo sapiens]
Length = 816
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 53 KNSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDINEG 93
K+ K + + CPAL C E +++ +L CC + +G
Sbjct: 362 KDQTMKLVESSGCPALDCPESHQI-----TLSHSCCKVCKG 397
>gi|223029470 NEL-like protein 2 isoform a [Homo sapiens]
Length = 866
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 53 KNSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDINEG 93
K+ K + + CPAL C E +++ +L CC + +G
Sbjct: 412 KDQTMKLVESSGCPALDCPESHQI-----TLSHSCCKVCKG 447
>gi|5453766 NEL-like protein 2 isoform b precursor [Homo sapiens]
Length = 816
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 53 KNSQAKTIATESCPALQCCEGYRMCASFDSLPPCCCDINEG 93
K+ K + + CPAL C E +++ +L CC + +G
Sbjct: 362 KDQTMKLVESSGCPALDCPESHQI-----TLSHSCCKVCKG 397
>gi|57546917 mannose receptor, C type 1-like 1 [Homo sapiens]
Length = 1456
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 3 VIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNHNPD----KVWWAKNSQAK 58
V A I A+LLL +Y + H A P AV N D K W SQ
Sbjct: 8 VFASVIPGAVLLLDTRQFLIYNEDHKRCVDAVSPSAVQTAACNQDAESQKFRWVSESQIM 67
Query: 59 TIATESC 65
++A + C
Sbjct: 68 SVAFKLC 74
>gi|241896926 protein tyrosine phosphatase, receptor type, H isoform
2 precursor [Homo sapiens]
Length = 937
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 3 VIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPE 37
VIAG + LL LI+V L ++F K ++PE
Sbjct: 576 VIAGAFVGILLFLILVGLLIFFLKRRNKKKQQKPE 610
>gi|241896924 protein tyrosine phosphatase, receptor type, H isoform
1 precursor [Homo sapiens]
Length = 1115
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 3 VIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPE 37
VIAG + LL LI+V L ++F K ++PE
Sbjct: 754 VIAGAFVGILLFLILVGLLIFFLKRRNKKKQQKPE 788
>gi|55770882 keratin 37 [Homo sapiens]
Length = 449
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 37 EAVAVKNHNPDKVWWAKNSQAKTIATESC-PALQCCE 72
EA+ NH + W+ S+ ++ SC LQCC+
Sbjct: 281 EAMVETNHQDVEQWFQAQSEGISLQAMSCSEELQCCQ 317
>gi|13375646 leucine rich repeat and fibronectin type III domain
containing 3 [Homo sapiens]
Length = 628
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 1 MPVIAGGILAALLLLIVVVLCLYFKIHNALKAAK 34
M + GG++ A +L+ + VL + +K+H K
Sbjct: 539 MIIALGGVIVASVLVFIFVLLMRYKVHGGQPPGK 572
>gi|219689132 solute carrier family 38, member 4 [Homo sapiens]
Length = 547
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 6 GGILAALLLLIVVVLCLYFKIHNALKAAKE 35
G IL ++LL V +L LY +H LK AKE
Sbjct: 104 GIILFIIMLLAVAILSLY-SVHLLLKTAKE 132
>gi|18482385 solute carrier family 38, member 4 [Homo sapiens]
Length = 547
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 6 GGILAALLLLIVVVLCLYFKIHNALKAAKE 35
G IL ++LL V +L LY +H LK AKE
Sbjct: 104 GIILFIIMLLAVAILSLY-SVHLLLKTAKE 132
>gi|153792230 hypothetical protein LOC57670 [Homo sapiens]
Length = 1884
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 7 GILAALLLLIVVVLCLYFKIHNALKAAKEPEAVA 40
G++ +L+++V+V+ LY+K+ K +P+ VA
Sbjct: 1254 GVVIPVLVVMVIVVILYWKLCRTDKLDFQPDTVA 1287
>gi|62548866 integrin, alpha D precursor [Homo sapiens]
Length = 1161
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 1 MPVIAGGILAALLLLIVVVLCLY----FKIHNALKAAKEPEAVA 40
+P+I G + ALLLL ++ LY FK H +PE A
Sbjct: 1101 IPIIMGSSVGALLLLALITATLYKLGFFKRHYKEMLEDKPEDTA 1144
>gi|222418615 integrin alpha 7 isoform 3 [Homo sapiens]
Length = 1044
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 3 VIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNH 44
VI +LA LL+L ++VL L+ K AK PEA + H
Sbjct: 947 VILLAVLAGLLVLALLVLLLWKM--GFFKRAKHPEATVPQYH 986
>gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens]
Length = 1141
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 3 VIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNH 44
VI +LA LL+L ++VL L+ K AK PEA + H
Sbjct: 1044 VILLAVLAGLLVLALLVLLLWKM--GFFKRAKHPEATVPQYH 1083
>gi|222418611 integrin alpha 7 isoform 2 precursor [Homo sapiens]
Length = 1137
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 3 VIAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNH 44
VI +LA LL+L ++VL L+ K AK PEA + H
Sbjct: 1040 VILLAVLAGLLVLALLVLLLWKM--GFFKRAKHPEATVPQYH 1079
>gi|89030143 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 3 VIAGGILAALLLLIVVVLCLYFKI 26
VI GGILA ++LL ++ + Y ++
Sbjct: 7 VITGGILATVILLCIIAVLCYCRL 30
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 22 LYFKIHNALKAAKEPEAVAVKNHNPDKVWWAKNSQAKT 59
+YF++H ALK +P V+ H K W N+ K+
Sbjct: 368 IYFQLHRALKMIVDP----VEPHGEMKFQWDLNAWTKS 401
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,596,684
Number of Sequences: 37866
Number of extensions: 120467
Number of successful extensions: 670
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 40
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.