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Search of human proteins with 23238231
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23238231 high mobility group nucleosomal binding domain 3
isoform HMGN3b [Homo sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23238231 high mobility group nucleosomal binding domain 3 iso... 158 1e-39
gi|20270186 high mobility group nucleosomal binding domain 3 iso... 154 2e-38
gi|5031749 high-mobility group nucleosomal binding domain 2 [Hom... 79 6e-16
gi|10835240 high mobility group nucleosomal binding domain 4 [Ho... 79 1e-15
gi|169165669 PREDICTED: similar to high-mobility group nucleosom... 77 4e-15
gi|113415254 PREDICTED: similar to high-mobility group nucleosom... 77 4e-15
gi|113414676 PREDICTED: similar to high-mobility group nucleosom... 77 4e-15
gi|169165461 PREDICTED: hypothetical protein [Homo sapiens] 73 4e-14
gi|169165899 PREDICTED: hypothetical protein [Homo sapiens] 73 4e-14
gi|169165087 PREDICTED: hypothetical protein [Homo sapiens] 73 4e-14
gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens] 72 7e-14
gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens] 72 7e-14
gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo ... 72 7e-14
gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens] 72 1e-13
gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo ... 72 1e-13
gi|239741624 PREDICTED: hypothetical protein XP_002342251 [Homo ... 72 1e-13
gi|169163639 PREDICTED: hypothetical protein [Homo sapiens] 70 3e-13
gi|88954992 PREDICTED: hypothetical protein [Homo sapiens] 70 3e-13
gi|88953166 PREDICTED: hypothetical protein [Homo sapiens] 70 3e-13
gi|169162318 PREDICTED: similar to hCG2040565 [Homo sapiens] 69 1e-12
gi|169161838 PREDICTED: similar to hCG2040565 [Homo sapiens] 69 1e-12
gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens] 69 1e-12
gi|169209024 PREDICTED: similar to high-mobility group nucleosom... 66 5e-12
gi|113425750 PREDICTED: similar to high-mobility group nucleosom... 66 5e-12
gi|113425298 PREDICTED: similar to high-mobility group nucleosom... 66 5e-12
gi|169202834 PREDICTED: hypothetical protein [Homo sapiens] 61 2e-10
gi|89034591 PREDICTED: hypothetical protein [Homo sapiens] 61 2e-10
gi|89033815 PREDICTED: hypothetical protein [Homo sapiens] 61 2e-10
gi|169208981 PREDICTED: hypothetical protein [Homo sapiens] 55 2e-08
gi|89039047 PREDICTED: hypothetical protein [Homo sapiens] 55 2e-08
>gi|23238231 high mobility group nucleosomal binding domain 3
isoform HMGN3b [Homo sapiens]
Length = 77
Score = 158 bits (399), Expect = 1e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
Sbjct: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
Query: 61 KGKKEEKQEAGKEGTEN 77
KGKKEEKQEAGKEGTEN
Sbjct: 61 KGKKEEKQEAGKEGTEN 77
>gi|20270186 high mobility group nucleosomal binding domain 3
isoform HMGN3a [Homo sapiens]
Length = 99
Score = 154 bits (388), Expect = 2e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA
Sbjct: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
Query: 61 KGKKEEKQEAGKEGT 75
KGKKEEKQEAGKEGT
Sbjct: 61 KGKKEEKQEAGKEGT 75
>gi|5031749 high-mobility group nucleosomal binding domain 2 [Homo
sapiens]
Length = 90
Score = 79.3 bits (194), Expect = 6e-16
Identities = 46/74 (62%), Positives = 54/74 (72%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ + +G D +KV K EP RRSARLSAKPAPPKPEPKP+K AKK G K+ +G
Sbjct: 1 MPKRKAEGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK 56
Query: 61 KGKKEEKQEAGKEG 74
KG K +AGKEG
Sbjct: 57 KG----KADAGKEG 66
>gi|10835240 high mobility group nucleosomal binding domain 4
[Homo sapiens]
Length = 90
Score = 78.6 bits (192), Expect = 1e-15
Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ + +G D +KV K EP RRSARLSAKPAPPKPEP+P+K SAKK G K+ +G
Sbjct: 1 MPKRKAKGDAKG-DKAKV-KDEPQRRSARLSAKPAPPKPEPRPKKASAKK--GEKLPKGR 56
Query: 61 KGKKEEKQEAGKEG 74
KG K +AGK+G
Sbjct: 57 KG----KADAGKDG 66
>gi|169165669 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 76.6 bits (187), Expect = 4e-15
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ +T+ +D +KV K EP RRS RLSAKPAPPKPEPKP+K AKK G K+ +G
Sbjct: 1 MPKRKAEGDTK-RDKAKV-KDEPQRRSVRLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK 56
Query: 61 KGKKEEKQEAGKEG 74
KG K +AG+EG
Sbjct: 57 KG----KADAGEEG 66
>gi|113415254 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 76.6 bits (187), Expect = 4e-15
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ +T+ +D +KV K EP RRS RLSAKPAPPKPEPKP+K AKK G K+ +G
Sbjct: 1 MPKRKAEGDTK-RDKAKV-KDEPQRRSVRLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK 56
Query: 61 KGKKEEKQEAGKEG 74
KG K +AG+EG
Sbjct: 57 KG----KADAGEEG 66
>gi|113414676 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 76.6 bits (187), Expect = 4e-15
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ +T+ +D +KV K EP RRS RLSAKPAPPKPEPKP+K AKK G K+ +G
Sbjct: 1 MPKRKAEGDTK-RDKAKV-KDEPQRRSVRLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK 56
Query: 61 KGKKEEKQEAGKEG 74
KG K +AG+EG
Sbjct: 57 KG----KADAGEEG 66
>gi|169165461 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 73.2 bits (178), Expect = 4e-14
Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV K EP RRS R SAKPAPPKPEPKP+K AKK G KI +G
Sbjct: 51 VPKRKAEGDAKG-DKAKV-KDEPQRRSMRFSAKPAPPKPEPKPKKAPAKK--GEKIPKGK 106
Query: 61 KGKKEEKQEAGKEG 74
KG K +AG+EG
Sbjct: 107 KG----KADAGEEG 116
>gi|169165899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 73.2 bits (178), Expect = 4e-14
Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV K EP RRS R SAKPAPPKPEPKP+K AKK G KI +G
Sbjct: 51 VPKRKAEGDAKG-DKAKV-KDEPQRRSMRFSAKPAPPKPEPKPKKAPAKK--GEKIPKGK 106
Query: 61 KGKKEEKQEAGKEG 74
KG K +AG+EG
Sbjct: 107 KG----KADAGEEG 116
>gi|169165087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 73.2 bits (178), Expect = 4e-14
Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV K EP RRS R SAKPAPPKPEPKP+K AKK G KI +G
Sbjct: 51 VPKRKAEGDAKG-DKAKV-KDEPQRRSMRFSAKPAPPKPEPKPKKAPAKK--GEKIPKGK 106
Query: 61 KGKKEEKQEAGKEG 74
KG K +AG+EG
Sbjct: 107 KG----KADAGEEG 116
>gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 130
Score = 72.4 bits (176), Expect = 7e-14
Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 6/74 (8%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV K +P RRS RLSAKPAPPKPEPKP+ AKK G K+ +G
Sbjct: 39 VPKRKAEGDAKG-DKAKV-KDKPQRRSMRLSAKPAPPKPEPKPKNAPAKK--GEKVPKGK 94
Query: 61 KGKKEEKQEAGKEG 74
KG + + +AGKEG
Sbjct: 95 KGAR--RADAGKEG 106
>gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 171
Score = 72.4 bits (176), Expect = 7e-14
Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 6/74 (8%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV K +P RRS RLSAKPAPPKPEPKP+ AKK G K+ +G
Sbjct: 80 VPKRKAEGDAKG-DKAKV-KDKPQRRSMRLSAKPAPPKPEPKPKNAPAKK--GEKVPKGK 135
Query: 61 KGKKEEKQEAGKEG 74
KG + + +AGKEG
Sbjct: 136 KGAR--RADAGKEG 147
>gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo
sapiens]
Length = 171
Score = 72.4 bits (176), Expect = 7e-14
Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 6/74 (8%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV K +P RRS RLSAKPAPPKPEPKP+ AKK G K+ +G
Sbjct: 80 VPKRKAEGDAKG-DKAKV-KDKPQRRSMRLSAKPAPPKPEPKPKNAPAKK--GEKVPKGK 135
Query: 61 KGKKEEKQEAGKEG 74
KG + + +AGKEG
Sbjct: 136 KGAR--RADAGKEG 147
>gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 197
Score = 72.0 bits (175), Expect = 1e-13
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 9/74 (12%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV P RRS RLSAKPAPPKPEPKP+K AKK G K+ +G
Sbjct: 109 LPKRKTEGDVKG-DKAKV--DTPQRRSTRLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK 163
Query: 61 KGKKEEKQEAGKEG 74
KG K +AGKEG
Sbjct: 164 KG----KADAGKEG 173
>gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo
sapiens]
Length = 197
Score = 72.0 bits (175), Expect = 1e-13
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 9/74 (12%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV P RRS RLSAKPAPPKPEPKP+K AKK G K+ +G
Sbjct: 109 LPKRKTEGDVKG-DKAKV--DTPQRRSTRLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK 163
Query: 61 KGKKEEKQEAGKEG 74
KG K +AGKEG
Sbjct: 164 KG----KADAGKEG 173
>gi|239741624 PREDICTED: hypothetical protein XP_002342251 [Homo
sapiens]
Length = 197
Score = 72.0 bits (175), Expect = 1e-13
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 9/74 (12%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
+PKRK+ + +G D +KV P RRS RLSAKPAPPKPEPKP+K AKK G K+ +G
Sbjct: 109 LPKRKTEGDVKG-DKAKV--DTPQRRSTRLSAKPAPPKPEPKPKKAPAKK--GEKVPKGK 163
Query: 61 KGKKEEKQEAGKEG 74
KG K +AGKEG
Sbjct: 164 KG----KADAGKEG 173
>gi|169163639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 70.5 bits (171), Expect = 3e-13
Identities = 43/74 (58%), Positives = 48/74 (64%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK + +G D +KV K EP RR RLSAKPAPP PEPKP K AKK G K+ +G
Sbjct: 1 MPKRKGEGDAKG-DKAKV-KNEPQRRPMRLSAKPAPPTPEPKPEKAPAKK--GEKVPKGK 56
Query: 61 KGKKEEKQEAGKEG 74
KG K AGKEG
Sbjct: 57 KG----KAYAGKEG 66
>gi|88954992 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 70.5 bits (171), Expect = 3e-13
Identities = 43/74 (58%), Positives = 48/74 (64%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK + +G D +KV K EP RR RLSAKPAPP PEPKP K AKK G K+ +G
Sbjct: 1 MPKRKGEGDAKG-DKAKV-KNEPQRRPMRLSAKPAPPTPEPKPEKAPAKK--GEKVPKGK 56
Query: 61 KGKKEEKQEAGKEG 74
KG K AGKEG
Sbjct: 57 KG----KAYAGKEG 66
>gi|88953166 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 70.5 bits (171), Expect = 3e-13
Identities = 43/74 (58%), Positives = 48/74 (64%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK + +G D +KV K EP RR RLSAKPAPP PEPKP K AKK G K+ +G
Sbjct: 1 MPKRKGEGDAKG-DKAKV-KNEPQRRPMRLSAKPAPPTPEPKPEKAPAKK--GEKVPKGK 56
Query: 61 KGKKEEKQEAGKEG 74
KG K AGKEG
Sbjct: 57 KG----KAYAGKEG 66
>gi|169162318 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 193
Score = 68.6 bits (166), Expect = 1e-12
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPK K+ + +G D +KV K EP RRSARLSAKP+ PKPEPKP+K AKK G K+ +
Sbjct: 36 MPKGKAEGDPKG-DKAKV-KDEPQRRSARLSAKPSSPKPEPKPKKAPAKK--GEKVLKEK 91
Query: 61 KGKKEEKQEAGKEG 74
KG K +AGKEG
Sbjct: 92 KG----KADAGKEG 101
>gi|169161838 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 176
Score = 68.6 bits (166), Expect = 1e-12
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPK K+ + +G D +KV K EP RRSARLSAKP+ PKPEPKP+K AKK G K+ +
Sbjct: 19 MPKGKAEGDPKG-DKAKV-KDEPQRRSARLSAKPSSPKPEPKPKKAPAKK--GEKVLKEK 74
Query: 61 KGKKEEKQEAGKEG 74
KG K +AGKEG
Sbjct: 75 KG----KADAGKEG 84
>gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 176
Score = 68.6 bits (166), Expect = 1e-12
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 8/74 (10%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPK K+ + +G D +KV K EP RRSARLSAKP+ PKPEPKP+K AKK G K+ +
Sbjct: 19 MPKGKAEGDPKG-DKAKV-KDEPQRRSARLSAKPSSPKPEPKPKKAPAKK--GEKVLKEK 74
Query: 61 KGKKEEKQEAGKEG 74
KG K +AGKEG
Sbjct: 75 KG----KADAGKEG 84
>gi|169209024 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 66.2 bits (160), Expect = 5e-12
Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ + +G D +KV + +P RRSARLS KPAPPKPE KP+K AK G K+ +G
Sbjct: 1 MPKRKAEGDAKG-DKAKV-RDKPQRRSARLSTKPAPPKPETKPKKVPAKN--GEKVLKGE 56
Query: 61 KGKKEEKQEAGK 72
GK + +E K
Sbjct: 57 MGKADTGKEGNK 68
>gi|113425750 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 66.2 bits (160), Expect = 5e-12
Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ + +G D +KV + +P RRSARLS KPAPPKPE KP+K AK G K+ +G
Sbjct: 1 MPKRKAEGDAKG-DKAKV-RDKPQRRSARLSTKPAPPKPETKPKKVPAKN--GEKVLKGE 56
Query: 61 KGKKEEKQEAGK 72
GK + +E K
Sbjct: 57 MGKADTGKEGNK 68
>gi|113425298 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 66.2 bits (160), Expect = 5e-12
Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ + +G D +KV + +P RRSARLS KPAPPKPE KP+K AK G K+ +G
Sbjct: 1 MPKRKAEGDAKG-DKAKV-RDKPQRRSARLSTKPAPPKPETKPKKVPAKN--GEKVLKGE 56
Query: 61 KGKKEEKQEAGK 72
GK + +E K
Sbjct: 57 MGKADTGKEGNK 68
>gi|169202834 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 60.8 bits (146), Expect = 2e-10
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 2 PKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGAK 61
P+RK+ + +G K +P RRS RL+AKPAPPKP KP+K AK G K+ +G K
Sbjct: 15 PRRKAKGDAKGVKAK--VKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKN--GEKVLKGKK 70
Query: 62 GKKEEKQEAGKEG 74
G K +AGKEG
Sbjct: 71 G----KADAGKEG 79
>gi|89034591 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 60.8 bits (146), Expect = 2e-10
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 2 PKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGAK 61
P+RK+ + +G K +P RRS RL+AKPAPPKP KP+K AK G K+ +G K
Sbjct: 15 PRRKAKGDAKGVKAK--VKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKN--GEKVLKGKK 70
Query: 62 GKKEEKQEAGKEG 74
G K +AGKEG
Sbjct: 71 G----KADAGKEG 79
>gi|89033815 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 60.8 bits (146), Expect = 2e-10
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 2 PKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGAK 61
P+RK+ + +G K +P RRS RL+AKPAPPKP KP+K AK G K+ +G K
Sbjct: 15 PRRKAKGDAKGVKAK--VKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKN--GEKVLKGKK 70
Query: 62 GKKEEKQEAGKEG 74
G K +AGKEG
Sbjct: 71 G----KADAGKEG 79
>gi|169208981 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 54.7 bits (130), Expect = 2e-08
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ E +D +K+ K + RS +LS KPA PKP+ KP+K KK G K+S+G
Sbjct: 1 MPKRKA-EGDAKEDKAKI-KDKLQGRSTKLSGKPALPKPQLKPKKAPTKK--GEKVSKGE 56
Query: 61 KGKKEEKQEAGK 72
KG+ +E K
Sbjct: 57 KGRANSDKEVNK 68
>gi|89039047 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 54.7 bits (130), Expect = 2e-08
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 1 MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAKKEPGAKISRGA 60
MPKRK+ E +D +K+ K + RS +LS KPA PKP+ KP+K KK G K+S+G
Sbjct: 1 MPKRKA-EGDAKEDKAKI-KDKLQGRSTKLSGKPALPKPQLKPKKAPTKK--GEKVSKGE 56
Query: 61 KGKKEEKQEAGK 72
KG+ +E K
Sbjct: 57 KGRANSDKEVNK 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.295 0.118 0.319
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,996
Number of Sequences: 37866
Number of extensions: 225161
Number of successful extensions: 3750
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 2071
Number of HSP's gapped (non-prelim): 1675
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.