Guide to the Human Genome
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Name: LOC100291244 Sequence: fasta or formatted (197aa) NCBI GI: 239747758
Description:

PREDICTED: hypothetical protein XP_002348261

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         22           3
 C cysteine            1.5          3           1
 D aspartate           8.1         16           1
 E glutamate           5.1         10           1
 F phenylalanine       0.5          1           1
 G glycine             9.1         18           1
 H histidine           1.5          3           1
 I isoleucine          2.5          5           1
 K lysine             13.2         26           2
 L leucine             9.1         18           3
 M methionine          1.5          3           1
 N asparagine          1.0          2           1
 P proline            10.7         21           2
 Q glutamine           3.6          7           1
 R arginine            5.6         11           2
 S serine              6.1         12           2
 T threonine           5.1         10           1
 V valine              3.0          6           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348261 
LOC100292625          1.000   PREDICTED: similar to hCG2040565 
LOC100287582          1.000   PREDICTED: hypothetical protein XP_002342251 
LOC729505             0.355   PREDICTED: hypothetical protein 
LOC729505             0.355   PREDICTED: hypothetical protein 
LOC729505             0.355   PREDICTED: hypothetical protein 
LOC100288691          0.350   PREDICTED: similar to hCG2040565 
LOC100288691          0.350   PREDICTED: hypothetical protein XP_002343066 
HMGN2                 0.345   high-mobility group nucleosomal binding domain 2 [Hom...
LOC100293829          0.345   PREDICTED: similar to hCG2040565 
LOC729687             0.318   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.318   PREDICTED: similar to high-mobility group nucleosom...
LOC648822             0.318   PREDICTED: similar to hCG2040565 
LOC729687             0.318   PREDICTED: similar to high-mobility group nucleosom...
LOC648822             0.318   PREDICTED: similar to hCG2040565 
LOC648822             0.316   PREDICTED: similar to hCG2040565 
HMGN4                 0.297   high mobility group nucleosomal binding domain 4 [Ho...
LOC646853             0.292   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.292   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.292   PREDICTED: similar to high-mobility group nucleosom...
LOC646049             0.289   PREDICTED: hypothetical protein 
LOC646049             0.289   PREDICTED: hypothetical protein 
LOC646049             0.289   PREDICTED: hypothetical protein 
LOC644992             0.276   PREDICTED: hypothetical protein 
LOC644992             0.276   PREDICTED: hypothetical protein 
LOC644992             0.276   PREDICTED: hypothetical protein 
LOC645263             0.241   PREDICTED: hypothetical protein 
LOC645263             0.241   PREDICTED: hypothetical protein 
LOC645263             0.241   PREDICTED: hypothetical protein 
LOC100128372          0.194   PREDICTED: similar to hCG2040192 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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