Guide to the Human Genome
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Name: C9orf98 Sequence: fasta or formatted (479aa) NCBI GI: 22749187
Description:

putative adenylate kinase-like protein C9orf98

Referenced in:

Nucleotide Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         25           2
 C cysteine            1.3          6           2
 D aspartate           5.2         25           1
 E glutamate           7.1         34           2
 F phenylalanine       2.9         14           2
 G glycine             4.2         20           1
 H histidine           2.7         13           1
 I isoleucine          7.5         36           2
 K lysine              4.2         20           2
 L leucine            12.9         62           3
 M methionine          2.7         13           1
 N asparagine          4.4         21           1
 P proline             7.9         38           3
 Q glutamine           6.5         31           2
 R arginine            6.1         29           2
 S serine              4.0         19           2
 T threonine           5.2         25           2
 V valine              5.8         28           1
 W tryptophan          0.8          4           1
 Y tyrosine            3.3         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   putative adenylate kinase-like protein C9orf98 [Homo... 
AK3L1                 0.071   adenylate kinase 3-like 1 isoform 7 
AK3L1                 0.071   adenylate kinase 3-like 1 isoform 5 
AK3L1                 0.071   adenylate kinase 3-like 1 isoform 6 
AK3                   0.068   adenylate kinase 3 
AK2                   0.061   adenylate kinase 2 isoform a 
AK2                   0.061   adenylate kinase 2 isoform b 
AK5                   0.046   adenylate kinase 5 isoform 1 
AK5                   0.046   adenylate kinase 5 isoform 2 
AKD1                  0.034   adenylate kinase domain containing 1 isoform 1 [Hom...
AK1                   0.032   adenylate kinase 1 
AKD1                  0.032   adenylate kinase domain containing 1 isoform 2 [Homo...
CMPK1                 0.024   UMP-CMP kinase 1 isoform a 
AK7                   0.014   adenylate kinase 7 
C3orf30               0.013   hypothetical protein LOC152405 
RFC2                  0.013   replication factor C 2 isoform 2 
RFC2                  0.011   replication factor C 2 isoform 1 
C7orf31               0.008   hypothetical protein LOC136895 
DENND3                0.007   DENN/MADD domain containing 3 
PEX6                  0.007   peroxisomal biogenesis factor 6 
HYDIN                 0.006   hydrocephalus inducing isoform a 
ERAL1                 0.006   Era-like 1 
IQGAP3                0.006   IQ motif containing GTPase activating protein 3 [Hom...
PEX1                  0.005   peroxin1 
NUP205                0.005   nucleoporin 205kDa 
IQGAP1                0.005   IQ motif containing GTPase activating protein 1 [Homo...
RBM20                 0.005   RNA binding motif protein 20 
DNHD1                 0.005   dynein heavy chain domain 1 isoform 1 
SPEF2                 0.005   KPL2 protein isoform 1 
LRRC40                0.005   leucine rich repeat containing 40 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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