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Search of human proteins with 226246608
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226246608 RNA polymerase II associated protein 2 [Homo
sapiens]
(612 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens] 1210 0.0
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 43 7e-04
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 43 7e-04
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 41 0.004
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 39 0.014
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 39 0.018
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 38 0.031
gi|11034845 Regulation of nuclear pre-mRNA domain containing 1B ... 38 0.031
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 38 0.031
gi|93102367 ral guanine nucleotide dissociation stimulator-like ... 37 0.041
gi|33946313 ninein isoform 4 [Homo sapiens] 37 0.041
gi|33946321 ninein isoform 5 [Homo sapiens] 37 0.041
gi|148536871 ninein isoform 1 [Homo sapiens] 37 0.041
gi|148536869 ninein isoform 2 [Homo sapiens] 37 0.041
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 36 0.091
gi|195927059 axin 2 [Homo sapiens] 36 0.12
gi|41872673 NIMA-related kinase 1 [Homo sapiens] 36 0.12
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 35 0.15
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 35 0.15
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 35 0.20
gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens] 35 0.20
gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens] 35 0.20
gi|167466187 integrin-binding sialoprotein precursor [Homo sapiens] 35 0.26
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 35 0.26
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 35 0.26
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 35 0.26
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 35 0.26
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 35 0.26
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 35 0.26
gi|104526627 triadin [Homo sapiens] 35 0.26
>gi|226246608 RNA polymerase II associated protein 2 [Homo sapiens]
Length = 612
Score = 1210 bits (3131), Expect = 0.0
Identities = 612/612 (100%), Positives = 612/612 (100%)
Query: 1 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH 60
MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH
Sbjct: 1 MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALH 60
Query: 61 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS 120
IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS
Sbjct: 61 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS 120
Query: 121 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE 180
TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE
Sbjct: 121 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE 180
Query: 181 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP 240
EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP
Sbjct: 181 EVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP 240
Query: 241 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS 300
QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS
Sbjct: 241 QLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSS 300
Query: 301 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE 360
SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE
Sbjct: 301 SNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPE 360
Query: 361 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF 420
VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF
Sbjct: 361 VGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHF 420
Query: 421 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS 480
PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS
Sbjct: 421 PAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKS 480
Query: 481 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR 540
QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR
Sbjct: 481 QDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR 540
Query: 541 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES 600
LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES
Sbjct: 541 LTNRNIIHKPAEWTLIAMVLLSLLTPILGIQKHSQEGMVFTRFLDTLLEELHLKNEDLES 600
Query: 601 LTIIFRTSCLPE 612
LTIIFRTSCLPE
Sbjct: 601 LTIIFRTSCLPE 612
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 43.1 bits (100), Expect = 7e-04
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 157 WVREEERHPDFQLLKEEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSS 216
W +E E+H + +LL +S S ++ Q K K S +Y SSSSS+ SS
Sbjct: 59 WKKELEKHRE-KLLSGSES--SSKKRQRKKKEKKKSG---------RYSSSSSSSSDSSS 106
Query: 217 SDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGD 276
S ++ + R N + + S+ + ++ K + K K K + D TE+ D
Sbjct: 107 SSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSK---DGTEKEKD 163
Query: 277 CK-LDSQEKDATCELPLQKVNTQSSSNSTLPERLKASENSESEYSRSEITLVGISKKSAE 335
K L + K + + PL +++S S S E ++A + SE KK +
Sbjct: 164 IKGLSKKRKMYSEDKPL---SSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKK 220
Query: 336 HFKRKFAKS 344
H K+K K+
Sbjct: 221 HSKKKKKKA 229
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 43.1 bits (100), Expect = 7e-04
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 157 WVREEERHPDFQLLKEEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSS 216
W +E E+H + +LL +S S ++ Q K K S +Y SSSSS+ SS
Sbjct: 69 WKKELEKHRE-KLLSGSES--SSKKRQRKKKEKKKSG---------RYSSSSSSSSDSSS 116
Query: 217 SDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGD 276
S ++ + R N + + S+ + ++ K + K K K + D TE+ D
Sbjct: 117 SSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSK---DGTEKEKD 173
Query: 277 CK-LDSQEKDATCELPLQKVNTQSSSNSTLPERLKASENSESEYSRSEITLVGISKKSAE 335
K L + K + + PL +++S S S E ++A + SE KK +
Sbjct: 174 IKGLSKKRKMYSEDKPL---SSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKK 230
Query: 336 HFKRKFAKS 344
H K+K K+
Sbjct: 231 HSKKKKKKA 239
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 40.8 bits (94), Expect = 0.004
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 27/205 (13%)
Query: 172 EEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGN 231
+E S EE + +KA+ + P +K ESSS S+ SDSS D+E S G
Sbjct: 327 DESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDE---APSKPAGT 383
Query: 232 RPNSTNIRPQLHQKSIMKKKAG--------------HKANSKHKDKE--QTVVDVTEQLG 275
NS+N +P + KS K A KA+S ++E + + T+++
Sbjct: 384 TKNSSN-KPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKKMV 442
Query: 276 DCKLDSQEKDATCELPLQKVNTQSSSNSTLPERLKASENSESEYSRSEI------TLVGI 329
A LP ++ Q S +S+ +SE E + S+S + G
Sbjct: 443 ATTKPKATAKAALSLPAKQA-PQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGA 501
Query: 330 SKKSAEHFKRKFAKSNQVSRSVSSS 354
+ K+ A+S+ S S SS
Sbjct: 502 APSKPASAKKGKAESSNSSSSDDSS 526
Score = 34.3 bits (77), Expect = 0.34
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Query: 205 ESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKE 264
ESS+SS+ DSS + E+ P RP + P+ + S + + G A + +++E
Sbjct: 515 ESSNSSSSDDSSEEEEEKLKGKGSP--RPQA----PKANGTSALTAQNGKAAKNSEEEEE 568
Query: 265 Q--TVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSSSNSTLPERLKASENSESEYSRS 322
+ V + G K Q + A Q + + +T P+R K + + S + R
Sbjct: 569 EKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRV 628
Query: 323 EITLVGISKKSAEH 336
+ + + A++
Sbjct: 629 REEEIEVDSRVADN 642
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 38.9 bits (89), Expect = 0.014
Identities = 94/495 (18%), Positives = 187/495 (37%), Gaps = 59/495 (11%)
Query: 7 PSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALHIVEQLL 66
P S G S K T Q +QE+ KR E + +++ +++ L
Sbjct: 264 PESDGEPVVEDGTSVKTLETLQQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQL 323
Query: 67 EENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKI-STKTNK 125
+E + E +E + + A + ++ + K L Q K ++ + K ++ T K
Sbjct: 324 DERLQE---LEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAETKRQMHETLEMK 380
Query: 126 VYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGEEVQLC 185
+I + +S Q + E +E+ F+ L++ S + ++ +
Sbjct: 381 EEEIAQLRSRIKQMTTQGEELREQ---------KEKSERAAFEELEKALS--TAQKTEEA 429
Query: 186 SKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQK 245
+ +K + EK E S + S ++ V ++ + +LH+K
Sbjct: 430 RRKLKAEMDEQIKTIEKTSEEERISLQQELSRVKQE--VVDVMKKSSEEQIAKLQKLHEK 487
Query: 246 SIMKKKAG--HKANSKHKD-KEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSSSN 302
+ +K+ K ++ ++ +EQ V + + + SQEK+ L L+++ Q +
Sbjct: 488 ELARKEQELTKKLQTREREFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAI 547
Query: 303 STLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPEVG 362
T E E+E R+ I + KS Q +++ S + V E
Sbjct: 548 LTESENKLRDLQQEAETYRTRIL----------ELESSLEKSLQENKNQSKDLAVHLEAE 597
Query: 363 KRNLLKVLKETLIEWKTE-ETLRF-----------LYGQNYASVCLKPEASLVKEELDED 410
K K + + + KTE E+L+ + Q Y + + E K E +++
Sbjct: 598 KNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVLKQQYQT---EMEKLREKCEQEKE 654
Query: 411 DIISDPDSHFPAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGR 470
++ D + F A E N K L + + E E L+ + E + R
Sbjct: 655 TLLKDKEIIFQAHIEEMNE--------------KTLEKLDVKQTELESLSSELSEVLKAR 700
Query: 471 YVLGEETTKSQDSEE 485
+ L EE + +D +
Sbjct: 701 HKLEEELSVLKDQTD 715
Score = 34.3 bits (77), Expect = 0.34
Identities = 101/537 (18%), Positives = 200/537 (37%), Gaps = 94/537 (17%)
Query: 33 KQEDASKRKAELEAAVRKKI-----EFERKALHIVEQLLEENITEEFLMECGRFITPAHY 87
K+E+ + LE+ K+ + E+K I +QLL + +E + G T +H
Sbjct: 1618 KEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKG---TESHL 1674
Query: 88 SDVVD-----ERSI----VKLCGYPLCQKKLGIVPKQKYKISTKTNKVYDITERKSFCSN 138
S++ ER + KL Q + IVP+ S K Y TE++ S
Sbjct: 1675 SELNTKLQEREREVHILEEKLKSVESSQSETLIVPR-----SAKNVAAY--TEQEEADSQ 1727
Query: 139 FCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGEEVQLCSKAIKTSDIDNPS 198
C Q + + + + + +E+ Q +E S H Q + IK +
Sbjct: 1728 GCVQKTYEEKISVLQRNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKLEHAE--- 1784
Query: 199 HFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKANS 258
KQ+E S H + + S I+ + +K G K N
Sbjct: 1785 --AKQHEDQSMIGHLQEELEEKNKKYSLIVAQH-----------------VEKEGGKNNI 1825
Query: 259 KHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKV--------------NTQSSSNST 304
+ K + V D D + QEK+ TC++ QK+ + ++
Sbjct: 1826 QAKQNLENVFD------DVQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMEELTS 1879
Query: 305 LPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPEVGKR 364
E+L+A + + +E+ +KS H + SN ++ ++ +R
Sbjct: 1880 KYEKLQALQQMDGRNKPTELLEENTEEKSKSHLVQPKLLSNMEAQHNDLEFKLAG--AER 1937
Query: 365 NLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWR 424
K+ KE + + ++ LR L ++ + E ++K+E D++
Sbjct: 1938 EKQKLGKEIV---RLQKDLRMLRKEH------QQELEILKKEYDQER------------E 1976
Query: 425 ESQNSLDESLPFRGSGTAIKPLPSYE-NLKKETEKLNLRIREFYRGRYVLGEETTKSQDS 483
E E L + + T + + + L ++ ++L + I+E + E +S
Sbjct: 1977 EKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQELEMTIKETINKAQEVEAELLESHQE 2036
Query: 484 EEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFR 540
E T L+ ++ + ++ ++L + + D+ TQL+ L + ++
Sbjct: 2037 E----TNQLLKKIAEKDDDLKRTAKRYEEILDAREEEMTAKVRDLQTQLEELQKKYQ 2089
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 38.5 bits (88), Expect = 0.018
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 2/137 (1%)
Query: 185 CSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQ 244
C + I S + +K+++SSSSS+ S S SD+ D SS + ++T + + +
Sbjct: 174 CGELIPKSKVKKEE--KKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRK 231
Query: 245 KSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSSSNST 304
K K HK K + K + + + + Q E+P N S
Sbjct: 232 KKHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMRKSP 291
Query: 305 LPERLKASENSESEYSR 321
K +N E E R
Sbjct: 292 PKADEKERKNRERERER 308
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 37.7 bits (86), Expect = 0.031
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 149 AQIPKTPV-WVREEERHPDFQLLKEEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESS 207
++I KTP ++ +E+ P ++ + E + +S C + K+S S S
Sbjct: 419 SRIIKTPRRFIEDEDYDPPIKIARLESTPNSRFSAPSCGSSEKSSAASQHSSQMSSDSSR 478
Query: 208 SSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQT 266
SSS D+S+D++ +LP R ++ + P L + ++ + + ++ E++
Sbjct: 479 SSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPENESNDRRSRRYSVSERS 537
>gi|11034845 Regulation of nuclear pre-mRNA domain containing 1B
[Homo sapiens]
Length = 326
Score = 37.7 bits (86), Expect = 0.031
Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 14/198 (7%)
Query: 172 EEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGN 231
+E+S + GE +Q +++ S P E++ S T + + D+ S
Sbjct: 112 QERSVYGGEFIQQLKLSMEDSKSPPPKATEEK--KSLKRTFQQIQEEEDDDYPGSY---- 165
Query: 232 RPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELP 291
P + P L ++ I + A S Q + + +++ D L + D
Sbjct: 166 SPQDPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAER 225
Query: 292 LQKVNTQS-----SSNSTLPERLKASENSES---EYSRSEITLVGISKKSAEHFKRKFAK 343
L K ++ N L L+ EY++++ ++ +K E +K+K A+
Sbjct: 226 LSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLAR 285
Query: 344 SNQVSRSVSSSVQVCPEV 361
QV + + S +Q P++
Sbjct: 286 VTQVRKELKSHIQSLPDL 303
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 37.7 bits (86), Expect = 0.031
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 185 CSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQ 244
CS+ K + D PS K SSSSST S SSSD E D G R T+ PQ
Sbjct: 89 CSRRSKLKEPDAPSK-SKSSSSSSSSTSSSSSSDEEDDSDLDAKRGPRGRETHPVPQKKA 147
Query: 245 KSIMKK 250
+ ++ K
Sbjct: 148 QILVAK 153
>gi|93102367 ral guanine nucleotide dissociation stimulator-like 1
[Homo sapiens]
Length = 803
Score = 37.4 bits (85), Expect = 0.041
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 171 KEEQSGHSGEEVQLCSKAIKTSD-----------IDNPSHFEKQYESSSSSTHSDSSSDN 219
K SG SGE + S + S+ +D P +K+ SSSS S S D
Sbjct: 575 KSTASGSSGESMDSVSVSSCESNHSEAEEGSITPMDTPDEPQKKLSESSSSCSSIHSMDT 634
Query: 220 EQDFVSSIL-PGNRPNSTNIRPQLHQKSI 247
+SS++ P + P S N P++H++S+
Sbjct: 635 NSSGMSSLINPLSSPPSCNNNPKIHKRSV 663
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 37.4 bits (85), Expect = 0.041
Identities = 56/274 (20%), Positives = 111/274 (40%), Gaps = 26/274 (9%)
Query: 61 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS 120
++EQ+ E++ + + HY +DE V C KK KQ+++
Sbjct: 616 VIEQMKEQHHRDICCLRLELEDKVRHYEKQLDET--VVSC------KKAQENMKQRHENE 667
Query: 121 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE 180
T T + I++ K+ + QA+ EA T R EE Q+ EE+ H E
Sbjct: 668 THTLEK-QISDLKNEIAELQGQAAVLKEAHHEAT---CRHEEEKKQLQVKLEEEKTHLQE 723
Query: 181 EVQLCSKA-IKTSDIDNPSHFEKQYESSSSSTHSDSS--------SDNEQDFVSSILPGN 231
+++L + +K + FE++ E SS ++ Q+ ++S++ +
Sbjct: 724 KLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKH 783
Query: 232 RPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELP 291
+R +L +K + + G + ++ + ++ Q DC Q+ CE
Sbjct: 784 TLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQ-SDC----QKVTERCESA 838
Query: 292 LQKVNTQSSSNSTLPERLKASENSESEYSRSEIT 325
LQ + + + + E S+ E+ + E+T
Sbjct: 839 LQSLEGRYRQELKDLQEQQREEKSQWEFEKDELT 872
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 37.4 bits (85), Expect = 0.041
Identities = 56/274 (20%), Positives = 111/274 (40%), Gaps = 26/274 (9%)
Query: 61 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS 120
++EQ+ E++ + + HY +DE V C KK KQ+++
Sbjct: 610 VIEQMKEQHHRDICCLRLELEDKVRHYEKQLDET--VVSC------KKAQENMKQRHENE 661
Query: 121 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE 180
T T + I++ K+ + QA+ EA T R EE Q+ EE+ H E
Sbjct: 662 THTLEK-QISDLKNEIAELQGQAAVLKEAHHEAT---CRHEEEKKQLQVKLEEEKTHLQE 717
Query: 181 EVQLCSKA-IKTSDIDNPSHFEKQYESSSSSTHSDSS--------SDNEQDFVSSILPGN 231
+++L + +K + FE++ E SS ++ Q+ ++S++ +
Sbjct: 718 KLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKH 777
Query: 232 RPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELP 291
+R +L +K + + G + ++ + ++ Q DC Q+ CE
Sbjct: 778 TLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQ-SDC----QKVTERCESA 832
Query: 292 LQKVNTQSSSNSTLPERLKASENSESEYSRSEIT 325
LQ + + + + E S+ E+ + E+T
Sbjct: 833 LQSLEGRYRQELKDLQEQQREEKSQWEFEKDELT 866
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 37.4 bits (85), Expect = 0.041
Identities = 56/274 (20%), Positives = 111/274 (40%), Gaps = 26/274 (9%)
Query: 61 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS 120
++EQ+ E++ + + HY +DE V C KK KQ+++
Sbjct: 610 VIEQMKEQHHRDICCLRLELEDKVRHYEKQLDET--VVSC------KKAQENMKQRHENE 661
Query: 121 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE 180
T T + I++ K+ + QA+ EA T R EE Q+ EE+ H E
Sbjct: 662 THTLEK-QISDLKNEIAELQGQAAVLKEAHHEAT---CRHEEEKKQLQVKLEEEKTHLQE 717
Query: 181 EVQLCSKA-IKTSDIDNPSHFEKQYESSSSSTHSDSS--------SDNEQDFVSSILPGN 231
+++L + +K + FE++ E SS ++ Q+ ++S++ +
Sbjct: 718 KLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKH 777
Query: 232 RPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELP 291
+R +L +K + + G + ++ + ++ Q DC Q+ CE
Sbjct: 778 TLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQ-SDC----QKVTERCESA 832
Query: 292 LQKVNTQSSSNSTLPERLKASENSESEYSRSEIT 325
LQ + + + + E S+ E+ + E+T
Sbjct: 833 LQSLEGRYRQELKDLQEQQREEKSQWEFEKDELT 866
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 37.4 bits (85), Expect = 0.041
Identities = 56/274 (20%), Positives = 111/274 (40%), Gaps = 26/274 (9%)
Query: 61 IVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKIS 120
++EQ+ E++ + + HY +DE V C KK KQ+++
Sbjct: 610 VIEQMKEQHHRDICCLRLELEDKVRHYEKQLDET--VVSC------KKAQENMKQRHENE 661
Query: 121 TKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGE 180
T T + I++ K+ + QA+ EA T R EE Q+ EE+ H E
Sbjct: 662 THTLEK-QISDLKNEIAELQGQAAVLKEAHHEAT---CRHEEEKKQLQVKLEEEKTHLQE 717
Query: 181 EVQLCSKA-IKTSDIDNPSHFEKQYESSSSSTHSDSS--------SDNEQDFVSSILPGN 231
+++L + +K + FE++ E SS ++ Q+ ++S++ +
Sbjct: 718 KLRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKH 777
Query: 232 RPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELP 291
+R +L +K + + G + ++ + ++ Q DC Q+ CE
Sbjct: 778 TLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQ-SDC----QKVTERCESA 832
Query: 292 LQKVNTQSSSNSTLPERLKASENSESEYSRSEIT 325
LQ + + + + E S+ E+ + E+T
Sbjct: 833 LQSLEGRYRQELKDLQEQQREEKSQWEFEKDELT 866
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 36.2 bits (82), Expect = 0.091
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 201 EKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRP-QLHQKSIMKKKAGHKANSK 259
+K SSSSS+ SDSSS + G R R + Q S + ++ K + K
Sbjct: 99 KKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVK 158
Query: 260 HKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQK-VNTQSSSNSTLPERLKASENSESE 318
K K + D TE+ D + S K P K ++++SSS S E ++A + E
Sbjct: 159 KKKKSK---DETEKEKDVR--SLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCE 213
Query: 319 YSRSEITLVGISKKS--AEHFKRKFAKSNQVSRS 350
V KK +H K+K KS +S
Sbjct: 214 EREQAKEKVKKKKKKQHKKHSKKKKKKSGSSHKS 247
>gi|195927059 axin 2 [Homo sapiens]
Length = 843
Score = 35.8 bits (81), Expect = 0.12
Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 16/165 (9%)
Query: 170 LKEEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQY------ESSSSSTHSDSSSDNEQDF 223
L+ S S E V ++ K SD NP H Y ++ S SD+ +D+
Sbjct: 255 LRATASVRSTETVDSGYRSFKRSDPVNPYHIGSGYVFAPATSANDSEISSDALTDDSMSM 314
Query: 224 VSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQE 283
S + G P + QL ++ KA + + H + T +L +
Sbjct: 315 TDSSVDGIPPYRVGSKKQLQREMHRSVKANGQVSLPHFPR-------THRLPKEMTPVEP 367
Query: 284 KDATCEL--PLQKVNTQSSSNSTLPERLKASENSESEYSRSEITL 326
EL L+K+ + S +L ERL+ E E SE+TL
Sbjct: 368 ATFAAELISRLEKLKLELESRHSLEERLQQIREDE-EREGSELTL 411
>gi|41872673 NIMA-related kinase 1 [Homo sapiens]
Length = 1258
Score = 35.8 bits (81), Expect = 0.12
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 258 SKHKDKEQTVVDVTEQLGDCKLDSQEKDA--TCELPLQKVNTQSSSNST----LPERLKA 311
S K + ++V+ VT L + +DS D T E +QK N SS L E LKA
Sbjct: 664 SPSKQQMRSVISVTSALKEVGVDSSLTDTRETSE-EMQKTNNAISSKREILRRLNENLKA 722
Query: 312 SENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQ 346
E+ + + + S+ + + + + EH K K S++
Sbjct: 723 QEDEKGKQNLSDTFEINVHEDAKEHEKEKSVSSDR 757
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 35.4 bits (80), Expect = 0.15
Identities = 39/182 (21%), Positives = 67/182 (36%), Gaps = 6/182 (3%)
Query: 173 EQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNR 232
+ S S + S + +SD + S+ +SS SS SDS S N D +S +
Sbjct: 811 DSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDS 870
Query: 233 PNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPL 292
+S+N S + +NS D DS + + +
Sbjct: 871 SDSSN-----SSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSD-SS 924
Query: 293 QKVNTQSSSNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVS 352
+ N+ +SNS+ S +S + S+ + S S++ + S+ S S
Sbjct: 925 ESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSD 984
Query: 353 SS 354
SS
Sbjct: 985 SS 986
Score = 32.3 bits (72), Expect = 1.3
Identities = 35/184 (19%), Positives = 63/184 (34%)
Query: 171 KEEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPG 230
K + S + S + +SD D+ SS S SDSS + D +S
Sbjct: 546 KSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSS 605
Query: 231 NRPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCEL 290
+ +S++ + +++S D + D DS + +
Sbjct: 606 DSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNS 665
Query: 291 PLQKVNTQSSSNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRS 350
++ SS +S+ + +S++S+S S + S S SN S
Sbjct: 666 SDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSD 725
Query: 351 VSSS 354
SS
Sbjct: 726 SDSS 729
Score = 32.0 bits (71), Expect = 1.7
Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 6/175 (3%)
Query: 186 SKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQK 245
S + +SD N S +SS+SS SDSS ++ S+ N ++++
Sbjct: 741 SDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNS 800
Query: 246 SIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCE------LPLQKVNTQS 299
S + +S D + + + D S D++ N
Sbjct: 801 SDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSD 860
Query: 300 SSNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSS 354
SSNS+ S NS S+ S S++ + S+ S S SS
Sbjct: 861 SSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSS 915
Score = 31.2 bits (69), Expect = 2.9
Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 2/171 (1%)
Query: 186 SKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQK 245
S + +SD N + + +SS S+ S +SSD+ SS + +S +
Sbjct: 710 SDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSD 769
Query: 246 SIMKKKAGHKANSKHKDKEQTVVDVTE--QLGDCKLDSQEKDATCELPLQKVNTQSSSNS 303
S + +NS + D ++ D S D++ N+ SSNS
Sbjct: 770 SSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNS 829
Query: 304 TLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSS 354
+ S +S S+ + S +S + S+ S S SS
Sbjct: 830 SDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSS 880
Score = 30.4 bits (67), Expect = 5.0
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 10/182 (5%)
Query: 175 SGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSS-SDNEQDFVSSILPGNRP 233
S +S S + +SD N S +SS+SS SDSS S N D S +
Sbjct: 718 SSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSS 777
Query: 234 NSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQ 293
+S+N S + +NS D ++ +S + + +
Sbjct: 778 DSSNSSDS--NDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSD---- 831
Query: 294 KVNTQSSSNSTLPERLKASENSESEYS-RSEITLVGISKKSAEHFKRKFAKSNQVSRSVS 352
++ SS++S + +S+ S+S+ S RS+ + S S++ + + S S
Sbjct: 832 --SSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESS 889
Query: 353 SS 354
+S
Sbjct: 890 NS 891
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 35.4 bits (80), Expect = 0.15
Identities = 41/160 (25%), Positives = 56/160 (35%), Gaps = 16/160 (10%)
Query: 249 KKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSSSNSTLPER 308
K AGHK +S + +Q+ + L KD E +K SS+
Sbjct: 787 KNSAGHKPSSNRESSKQSAAKEKDLLPSPAGPVPSKDPKTEHGSRKRTISQSSS------ 840
Query: 309 LKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPEVGKRNLLK 368
LK+S NS E S S SK+ K + S +V SS CP
Sbjct: 841 LKSSSNSNKETSGSSKNSSSTSKQKKTEGKTS-SSSKEVKEKAPSSSSNCPPSA------ 893
Query: 369 VLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELD 408
TL K T +NY++ EA +K D
Sbjct: 894 ---PTLDSSKPRRTKLVFDDRNYSADHYLQEAKKLKHNAD 930
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 35.0 bits (79), Expect = 0.20
Identities = 54/273 (19%), Positives = 113/273 (41%), Gaps = 46/273 (16%)
Query: 118 KISTKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEE---- 173
K T+ NK +I + ++ + +K E + K + E + + L E+
Sbjct: 90 KALTEKNKELEIAQDRNIAIQSQFTRTKE-ELEAEKRDLIRTNERLSQELEYLTEDVKRL 148
Query: 174 -----QSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSIL 228
+S + E+QL ++ SD+ + + EK+ E HS ++ N
Sbjct: 149 NEKLKESNTTKGELQLKLDELQASDV-SVKYREKRLEQEKELLHSQNTWLN--------- 198
Query: 229 PGNRPNSTNIRPQLHQKSIMKKKAGH-----KANSKHKDKEQTVVDVTEQLGDCKLDSQE 283
T ++ + + + ++ G+ K N ++K +E V + EQ+ K ++
Sbjct: 199 -------TELKTKTDELLALGREKGNEILELKCNLENKKEE--VSRLEEQMNGLKTSNEH 249
Query: 284 KDATCELPLQKVNTQSSSNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAK 343
E L K+ +++ E+ N+ I L + K +A+ + AK
Sbjct: 250 LQKHVEDLLTKLKEAKEQQASMEEKFHNELNAH-------IKLSNLYKSAADDSE---AK 299
Query: 344 SNQVSRSVSSSVQVCPEVGKRNLLKVLKETLIE 376
SN+++R+V ++ E G+ N K +++ L+E
Sbjct: 300 SNELTRAVEELHKLLKEAGEAN--KAIQDHLLE 330
>gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 35.0 bits (79), Expect = 0.20
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 133 KSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGEEVQLCSKAIKTS 192
K+F N Y + A I T + E+ER DF+ + E + + +++ +A+K
Sbjct: 364 KAFYENRAY-TPRSLSAPIFTTSLNFVEKER--DFRKINHEMANGGNQNLKVADEALKVD 420
Query: 193 DIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKA 252
D D F S +NE + SS P P K+I++K+
Sbjct: 421 DCDCHPEFSPPSSQPPKHKGKQKSRNNESEKFSSSSPLTLPADL--------KNILEKQF 472
Query: 253 GHKANSKHKD 262
+ + H+D
Sbjct: 473 SKSSRAAHQD 482
>gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 35.0 bits (79), Expect = 0.20
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 133 KSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGEEVQLCSKAIKTS 192
K+F N Y + A I T + E+ER DF+ + E + + +++ +A+K
Sbjct: 364 KAFYENRAY-TPRSLSAPIFTTSLNFVEKER--DFRKINHEMANGGNQNLKVADEALKVD 420
Query: 193 DIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKA 252
D D F S +NE + SS P P K+I++K+
Sbjct: 421 DCDCHPEFSPPSSQPPKHKGKQKSRNNESEKFSSSSPLTLPADL--------KNILEKQF 472
Query: 253 GHKANSKHKD 262
+ + H+D
Sbjct: 473 SKSSRAAHQD 482
>gi|167466187 integrin-binding sialoprotein precursor [Homo sapiens]
Length = 317
Score = 34.7 bits (78), Expect = 0.26
Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 13/195 (6%)
Query: 195 DNPSHFEKQYESSSSS------THSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQKSI- 247
D+ S E++ E +S+ ++ D S+ E +S+ G ++T +I
Sbjct: 72 DDSSEEEEEEEETSNEGENNEESNEDEDSEAENTTLSATTLGYGEDATPGTGYTGLAAIQ 131
Query: 248 MKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSSSNSTLPE 307
+ KKAG N K+KE + E+ G+ +++E +A + Q +N +S+NST E
Sbjct: 132 LPKKAGDITNKATKEKESDEEEEEEEEGN---ENEESEAEVDENEQGIN-GTSTNSTEAE 187
Query: 308 RLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQ--VCPEVGKRN 365
S ++ E ++ G + + R+ +++ + S + + P+V +
Sbjct: 188 NGNGSSGGDNGEEGEEESVTGANAEDTTETGRQGKGTSKTTTSPNGGFEPTTPPQVYRTT 247
Query: 366 LLKVLKETLIEWKTE 380
K T +E++ E
Sbjct: 248 SPPFGKTTTVEYEGE 262
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 34.7 bits (78), Expect = 0.26
Identities = 68/333 (20%), Positives = 131/333 (39%), Gaps = 31/333 (9%)
Query: 201 EKQYESSSSSTHSDS----SSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKA 256
E + S S+T +DS SS+ +Q + S+L + T +L K K +A
Sbjct: 324 ENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQDKLQAKSPKEAEA 383
Query: 257 NSKHKDKEQTVVDVTEQLGD----CKLDSQEKDATCELPLQKVNTQSSSN-----STLPE 307
+ T D+ LG DS+ + L K T + L +
Sbjct: 384 DLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQLQEILQD 443
Query: 308 RLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCP---EVGKR 364
K E+SE+E + ++ L + AE + ++ S +S ++ E +
Sbjct: 444 LQKRLESSEAERKQLQVEL---QSRRAELVCLNNTEISENSSDLSQKLKETQSKYEEAMK 500
Query: 365 NLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWR 424
+L V K+ + + E++ Y + + E +++K++L + + + + + +
Sbjct: 501 EVLSVQKQMKLGLVSPESMDN-YSHFHELRVTEEEINVLKQDLQ--NALEESERN----K 553
Query: 425 ESQNSLDESLPFRGSGTAIK-PLPSYENLKKE----TEKLNLRIREFYRGRYVLGEETTK 479
E L+E L R GT IK P+ YE +K E +N + EE K
Sbjct: 554 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 613
Query: 480 SQDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSK 512
+D+ + T D + + ++++L+K
Sbjct: 614 LKDTLKSQMTQEASDEAEDMKEAMNRMIDELNK 646
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 34.7 bits (78), Expect = 0.26
Identities = 68/333 (20%), Positives = 131/333 (39%), Gaps = 31/333 (9%)
Query: 201 EKQYESSSSSTHSDS----SSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKA 256
E + S S+T +DS SS+ +Q + S+L + T +L K K +A
Sbjct: 313 ENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQDKLQAKSPKEAEA 372
Query: 257 NSKHKDKEQTVVDVTEQLGD----CKLDSQEKDATCELPLQKVNTQSSSN-----STLPE 307
+ T D+ LG DS+ + L K T + L +
Sbjct: 373 DLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQLQEILQD 432
Query: 308 RLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCP---EVGKR 364
K E+SE+E + ++ L + AE + ++ S +S ++ E +
Sbjct: 433 LQKRLESSEAERKQLQVEL---QSRRAELVCLNNTEISENSSDLSQKLKETQSKYEEAMK 489
Query: 365 NLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWR 424
+L V K+ + + E++ Y + + E +++K++L + + + + + +
Sbjct: 490 EVLSVQKQMKLGLVSPESMDN-YSHFHELRVTEEEINVLKQDLQ--NALEESERN----K 542
Query: 425 ESQNSLDESLPFRGSGTAIK-PLPSYENLKKE----TEKLNLRIREFYRGRYVLGEETTK 479
E L+E L R GT IK P+ YE +K E +N + EE K
Sbjct: 543 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 602
Query: 480 SQDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSK 512
+D+ + T D + + ++++L+K
Sbjct: 603 LKDTLKSQMTQEASDEAEDMKEAMNRMIDELNK 635
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 34.7 bits (78), Expect = 0.26
Identities = 68/333 (20%), Positives = 131/333 (39%), Gaps = 31/333 (9%)
Query: 201 EKQYESSSSSTHSDS----SSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKA 256
E + S S+T +DS SS+ +Q + S+L + T +L K K +A
Sbjct: 292 ENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQDKLQAKSPKEAEA 351
Query: 257 NSKHKDKEQTVVDVTEQLGD----CKLDSQEKDATCELPLQKVNTQSSSN-----STLPE 307
+ T D+ LG DS+ + L K T + L +
Sbjct: 352 DLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQLQEILQD 411
Query: 308 RLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCP---EVGKR 364
K E+SE+E + ++ L + AE + ++ S +S ++ E +
Sbjct: 412 LQKRLESSEAERKQLQVEL---QSRRAELVCLNNTEISENSSDLSQKLKETQSKYEEAMK 468
Query: 365 NLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWR 424
+L V K+ + + E++ Y + + E +++K++L + + + + + +
Sbjct: 469 EVLSVQKQMKLGLVSPESMDN-YSHFHELRVTEEEINVLKQDLQ--NALEESERN----K 521
Query: 425 ESQNSLDESLPFRGSGTAIK-PLPSYENLKKE----TEKLNLRIREFYRGRYVLGEETTK 479
E L+E L R GT IK P+ YE +K E +N + EE K
Sbjct: 522 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 581
Query: 480 SQDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSK 512
+D+ + T D + + ++++L+K
Sbjct: 582 LKDTLKSQMTQEASDEAEDMKEAMNRMIDELNK 614
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 34.7 bits (78), Expect = 0.26
Identities = 68/333 (20%), Positives = 131/333 (39%), Gaps = 31/333 (9%)
Query: 201 EKQYESSSSSTHSDS----SSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKA 256
E + S S+T +DS SS+ +Q + S+L + T +L K K +A
Sbjct: 321 ENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQDKLQAKSPKEAEA 380
Query: 257 NSKHKDKEQTVVDVTEQLGD----CKLDSQEKDATCELPLQKVNTQSSSN-----STLPE 307
+ T D+ LG DS+ + L K T + L +
Sbjct: 381 DLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQLQEILQD 440
Query: 308 RLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCP---EVGKR 364
K E+SE+E + ++ L + AE + ++ S +S ++ E +
Sbjct: 441 LQKRLESSEAERKQLQVEL---QSRRAELVCLNNTEISENSSDLSQKLKETQSKYEEAMK 497
Query: 365 NLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWR 424
+L V K+ + + E++ Y + + E +++K++L + + + + + +
Sbjct: 498 EVLSVQKQMKLGLVSPESMDN-YSHFHELRVTEEEINVLKQDLQ--NALEESERN----K 550
Query: 425 ESQNSLDESLPFRGSGTAIK-PLPSYENLKKE----TEKLNLRIREFYRGRYVLGEETTK 479
E L+E L R GT IK P+ YE +K E +N + EE K
Sbjct: 551 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 610
Query: 480 SQDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSK 512
+D+ + T D + + ++++L+K
Sbjct: 611 LKDTLKSQMTQEASDEAEDMKEAMNRMIDELNK 643
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 34.7 bits (78), Expect = 0.26
Identities = 68/333 (20%), Positives = 131/333 (39%), Gaps = 31/333 (9%)
Query: 201 EKQYESSSSSTHSDS----SSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKA 256
E + S S+T +DS SS+ +Q + S+L + T +L K K +A
Sbjct: 321 ENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQDKLQAKSPKEAEA 380
Query: 257 NSKHKDKEQTVVDVTEQLGD----CKLDSQEKDATCELPLQKVNTQSSSN-----STLPE 307
+ T D+ LG DS+ + L K T + L +
Sbjct: 381 DLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQLQEILQD 440
Query: 308 RLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCP---EVGKR 364
K E+SE+E + ++ L + AE + ++ S +S ++ E +
Sbjct: 441 LQKRLESSEAERKQLQVEL---QSRRAELVCLNNTEISENSSDLSQKLKETQSKYEEAMK 497
Query: 365 NLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWR 424
+L V K+ + + E++ Y + + E +++K++L + + + + + +
Sbjct: 498 EVLSVQKQMKLGLVSPESMDN-YSHFHELRVTEEEINVLKQDLQ--NALEESERN----K 550
Query: 425 ESQNSLDESLPFRGSGTAIK-PLPSYENLKKE----TEKLNLRIREFYRGRYVLGEETTK 479
E L+E L R GT IK P+ YE +K E +N + EE K
Sbjct: 551 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 610
Query: 480 SQDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSK 512
+D+ + T D + + ++++L+K
Sbjct: 611 LKDTLKSQMTQEASDEAEDMKEAMNRMIDELNK 643
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 34.7 bits (78), Expect = 0.26
Identities = 68/333 (20%), Positives = 131/333 (39%), Gaps = 31/333 (9%)
Query: 201 EKQYESSSSSTHSDS----SSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKA 256
E + S S+T +DS SS+ +Q + S+L + T +L K K +A
Sbjct: 321 ENKDRLSDSTTGADSLLDISSEADQQDLLSLLQAKVASLTLHNKELQDKLQAKSPKEAEA 380
Query: 257 NSKHKDKEQTVVDVTEQLGD----CKLDSQEKDATCELPLQKVNTQSSSN-----STLPE 307
+ T D+ LG DS+ + L K T + L +
Sbjct: 381 DLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQLQEILQD 440
Query: 308 RLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCP---EVGKR 364
K E+SE+E + ++ L + AE + ++ S +S ++ E +
Sbjct: 441 LQKRLESSEAERKQLQVEL---QSRRAELVCLNNTEISENSSDLSQKLKETQSKYEEAMK 497
Query: 365 NLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWR 424
+L V K+ + + E++ Y + + E +++K++L + + + + + +
Sbjct: 498 EVLSVQKQMKLGLVSPESMDN-YSHFHELRVTEEEINVLKQDLQ--NALEESERN----K 550
Query: 425 ESQNSLDESLPFRGSGTAIK-PLPSYENLKKE----TEKLNLRIREFYRGRYVLGEETTK 479
E L+E L R GT IK P+ YE +K E +N + EE K
Sbjct: 551 EKVRELEEKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMK 610
Query: 480 SQDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSK 512
+D+ + T D + + ++++L+K
Sbjct: 611 LKDTLKSQMTQEASDEAEDMKEAMNRMIDELNK 643
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 34.7 bits (78), Expect = 0.26
Identities = 70/349 (20%), Positives = 124/349 (35%), Gaps = 56/349 (16%)
Query: 145 KFFEAQIPKTPVWVREEERHPDFQLLKEEQSGH--SGEEVQLCSKAIKTSDIDNPSHFEK 202
K + + P+T +E+++ + +E+ G++ ++ A K ++ K
Sbjct: 189 KIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKEVQKTPSKPK 248
Query: 203 QYESSSSSTHSDSSSDNEQDFVSSIL---------PGNRP------------NSTNIRPQ 241
+ E + S ++ F ++ PG P T P
Sbjct: 249 EKEDKEKAAVSKHEQKDQYAFCRYMIDIFVHGDLKPGQSPAIPPPLPTEQASRPTPASPA 308
Query: 242 LHQKSIMKKKAGHKANSKHKDKE----------QTVVDVTEQLGDCKLDSQEKDATCELP 291
L +K KKKA K S+ K KE +T +DV ++ + S+ K T ++
Sbjct: 309 LEEKEGEKKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKK--EPGKASETKQGTVKIA 366
Query: 292 LQKVNTQSSSNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSV 351
Q + + K +E + + + E K +H + AKS + SV
Sbjct: 367 AQAAAKKDEKKEDSKKTKKPAEVEQPKGKKQE--------KKEKHVEP--AKSPKKEHSV 416
Query: 352 SSSVQV--CPEVGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDE 409
S QV E K + V + + K EE Q K ++ L +
Sbjct: 417 PSDKQVKAKTERAKEEIGAVSIKKAVPGKKEEKTTKTVEQEIR----KEKSGKTSSILKD 472
Query: 410 DDIISDPDSHFPA---WRESQNSLDESLPFRGSGTAIKPLPSYENLKKE 455
+ I + PA +E + DE + +G +KP P KKE
Sbjct: 473 KEPIKGKEEKVPASLKEKEPETKKDEKM--SKAGKEVKPKPPQLQGKKE 519
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,575,985
Number of Sequences: 37866
Number of extensions: 1002745
Number of successful extensions: 4233
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 3845
Number of HSP's gapped (non-prelim): 386
length of query: 612
length of database: 18,247,518
effective HSP length: 108
effective length of query: 504
effective length of database: 14,157,990
effective search space: 7135626960
effective search space used: 7135626960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.