Guide to the Human Genome
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Name: SDR9C7 Sequence: fasta or formatted (313aa) NCBI GI: 22507405
Description:

short chain dehydrogenase/reductase family 9C, member 7

Referenced in:

Alcohol and Aldehyde Dehydrogenases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         19           3
 C cysteine            1.6          5           1
 D aspartate           5.1         16           2
 E glutamate           5.4         17           2
 F phenylalanine       3.5         11           1
 G glycine             7.7         24           3
 H histidine           0.6          2           1
 I isoleucine          5.1         16           2
 K lysine              5.8         18           1
 L leucine            10.5         33           2
 M methionine          2.9          9           1
 N asparagine          4.8         15           2
 P proline             4.2         13           1
 Q glutamine           2.9          9           1
 R arginine            7.7         24           2
 S serine              6.7         21           3
 T threonine           4.5         14           2
 V valine              9.3         29           2
 W tryptophan          1.6          5           1
 Y tyrosine            4.2         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   short chain dehydrogenase/reductase family 9C, membe... 
RDH16                 0.522   retinol dehydrogenase 16 
HSD17B6               0.503   hydroxysteroid (17-beta) dehydrogenase 6 
RDH5                  0.454   retinol dehydrogenase 5 (11-cis and 9-cis) 
DHRS9                 0.429   NADP-dependent retinol dehydrogenase/reductase [Homo...
DHRS9                 0.429   NADP-dependent retinol dehydrogenase/reductase [Hom...
DHRS9                 0.429   NADP-dependent retinol dehydrogenase/reductase [Hom...
DHRS9                 0.429   NADP-dependent retinol dehydrogenase/reductase [Homo...
BDH1                  0.272   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
BDH1                  0.272   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
BDH1                  0.272   3-hydroxybutyrate dehydrogenase, type 1 precursor [H...
HSD17B2               0.225   hydroxysteroid (17-beta) dehydrogenase 2 
HSD11B2               0.189   hydroxysteroid (11-beta) dehydrogenase 2 
RDH8                  0.099   retinol dehydrogenase 8 (all-trans) 
HSD17B1               0.098   hydroxysteroid (17-beta) dehydrogenase 1 
DHRS7                 0.075   dehydrogenase/reductase (SDR family) member 7 
DHRS7B                0.075   dehydrogenase/reductase (SDR family) member 7B [Homo...
HSD17B14              0.073   dehydrogenase/reductase (SDR family) member 10 [Homo...
RDH12                 0.071   retinol dehydrogenase 12 
RDH11                 0.071   retinol dehydrogenase 11 
RDH13                 0.066   retinol dehydrogenase 13 isoform 1 
SDR16C5               0.065   epidermal retinal dehydrogenase 2 
HSD11B1L              0.061   short-chain dehydrogenase/reductase 10 isoform e [Ho...
HSD11B1L              0.061   short-chain dehydrogenase/reductase 10 isoform b [Ho...
HPGD                  0.061   hydroxyprostaglandin dehydrogenase 15-(NAD) isoform ...
HSD11B1               0.056   11-beta-hydroxysteroid dehydrogenase 1 
HSD11B1               0.056   11-beta-hydroxysteroid dehydrogenase 1 
HSD17B10              0.055   hydroxysteroid (17-beta) dehydrogenase 10 isoform 1 [...
KDSR                  0.055   3-ketodihydrosphingosine reductase precursor 
HSD17B12              0.053   hydroxysteroid (17-beta) dehydrogenase 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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