Guide to the Human Genome
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Name: FAM171A2 Sequence: fasta or formatted (826aa) NCBI GI: 222831660
Description:

family with sequence similarity 171, member A2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         82           3
 C cysteine            0.7          6           1
 D aspartate           3.9         32           2
 E glutamate           5.8         48           2
 F phenylalanine       2.3         19           2
 G glycine            10.4         86           6
 H histidine           2.1         17           1
 I isoleucine          2.4         20           1
 K lysine              2.3         19           2
 L leucine            11.9         98           3
 M methionine          1.1          9           1
 N asparagine          1.6         13           1
 P proline            11.1         92           5
 Q glutamine           3.4         28           2
 R arginine            7.6         63           3
 S serine              9.9         82           3
 T threonine           4.8         40           2
 V valine              5.6         46           1
 W tryptophan          1.3         11           1
 Y tyrosine            1.8         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 171, member A2 [Hom... 
FAM171A1              0.330   hypothetical protein LOC221061 
FAM171B               0.155   KIAA1946 
GRIN2D                0.019   N-methyl-D-aspartate receptor subunit 2D precursor ...
COL2A1                0.015   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.015   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.015   alpha 1 type I collagen preproprotein 
COL8A2                0.015   collagen, type VIII, alpha 2 
COL11A1               0.015   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.015   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.015   alpha 1 type XI collagen isoform A preproprotein [Ho...
CASKIN2               0.015   cask-interacting protein 2 isoform b 
CASKIN2               0.015   cask-interacting protein 2 isoform a 
ZIC5                  0.013   zinc finger protein of the cerebellum 5 
SFRS15                0.013   splicing factor, arginine/serine-rich 15 isoform 3 ...
COL5A2                0.013   alpha 2 type V collagen preproprotein 
TAF4                  0.013   TBP-associated factor 4 
COL11A2               0.013   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.013   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.013   collagen, type XI, alpha 2 isoform 1 preproprotein ...
BAT3                  0.013   HLA-B associated transcript-3 isoform b 
BAT3                  0.013   HLA-B associated transcript-3 isoform b 
BAT3                  0.013   HLA-B associated transcript-3 isoform b 
BAT3                  0.013   HLA-B associated transcript-3 isoform a 
COL4A4                0.013   alpha 4 type IV collagen precursor 
COL4A3                0.013   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.013   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.013   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.013   alpha 3 type IV collagen isoform 1 precursor 
HCN4                  0.012   hyperpolarization activated cyclic nucleotide-gated p...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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