Guide to the Human Genome
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Name: IQCF5 Sequence: fasta or formatted (148aa) NCBI GI: 222831628
Description:

IQ motif containing F5

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         11           2
 C cysteine            4.1          6           1
 D aspartate           0.0          0           0
 E glutamate           7.4         11           2
 F phenylalanine       2.0          3           1
 G glycine             2.7          4           1
 H histidine           2.7          4           1
 I isoleucine          6.8         10           2
 K lysine              4.1          6           1
 L leucine            12.2         18           2
 M methionine          3.4          5           1
 N asparagine          2.0          3           1
 P proline             2.0          3           1
 Q glutamine           8.8         13           2
 R arginine           11.5         17           3
 S serine              3.4          5           1
 T threonine           2.0          3           1
 V valine              8.1         12           1
 W tryptophan          6.8         10           2
 Y tyrosine            2.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   IQ motif containing F5 
IQCF1                 0.522   IQ motif containing F1 
IQCF2                 0.405   IQ motif containing F2 
IQCF6                 0.346   IQ motif containing F6 
IQCF3                 0.291   IQ motif containing F3 
MYO9A                 0.083   myosin IXA 
ASPM                  0.062   asp (abnormal spindle)-like, microcephaly associate...
IQGAP3                0.059   IQ motif containing GTPase activating protein 3 [Hom...
SPATA17               0.059   spermatogenesis associated 17 
MYO1C                 0.048   myosin IC isoform b 
MYO1C                 0.048   myosin IC isoform a 
MYO1C                 0.048   myosin IC isoform c 
MYO5C                 0.048   myosin VC 
MYO7B                 0.042   myosin VIIB 
MYO5B                 0.035   myosin VB 
LRRIQ1                0.035   leucine-rich repeats and IQ motif containing 1 isof...
MYO5A                 0.031   myosin VA isoform 2 
MYO5A                 0.031   myosin VA isoform 1 
MYO9B                 0.031   myosin IXB isoform 2 
MYO9B                 0.031   myosin IXB isoform 1 
KIAA1683              0.028   KIAA1683 isoform a 
KIAA1683              0.028   KIAA1683 isoform c 
KIAA1683              0.028   KIAA1683 isoform b 
IQCB1                 0.024   IQ motif containing B1 isoform a 
NCR2                  0.024   natural cytotoxicity triggering receptor 2 
MYO1B                 0.021   myosin IB isoform 1 
MYO1B                 0.021   myosin IB isoform 2 
MYO1B                 0.021   myosin IB isoform 1 
MYO7A                 0.021   myosin VIIA isoform 2 
MYO7A                 0.021   myosin VIIA isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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