Guide to the Human Genome
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Name: EDEM2 Sequence: fasta or formatted (541aa) NCBI GI: 222537739
Description:

ER degradation enhancer, mannosidase alpha-like 2 isoform 2

Referenced in:

Protein Glycosylation

Other entries for this name:
alt prot [578aa] ER degradation enhancer, mannosidase alpha-like 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         39           2
 C cysteine            1.5          8           2
 D aspartate           5.5         30           2
 E glutamate           6.5         35           2
 F phenylalanine       5.2         28           2
 G glycine             7.8         42           2
 H histidine           2.0         11           2
 I isoleucine          4.4         24           1
 K lysine              4.4         24           2
 L leucine            12.0         65           2
 M methionine          2.2         12           1
 N asparagine          3.3         18           2
 P proline             6.5         35           2
 Q glutamine           3.3         18           1
 R arginine            4.4         24           1
 S serine              6.1         33           2
 T threonine           5.4         29           1
 V valine              6.7         36           2
 W tryptophan          1.7          9           1
 Y tyrosine            3.9         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ER degradation enhancer, mannosidase alpha-like 2 i... 
EDEM2                 0.982   ER degradation enhancer, mannosidase alpha-like 2 i...
EDEM1                 0.281   ER degradation enhancer, mannosidase alpha-like 1 [Ho...
EDEM3                 0.244   ER degradation enhancer, mannosidase alpha-like 3 [...
MAN1C1                0.131   mannosidase, alpha, class 1C, member 1 
MAN1A1                0.131   mannosidase, alpha, class 1A, member 1 
MAN1A2                0.130   mannosidase, alpha, class 1A, member 2 
MAN1B1                0.120   alpha 1,2-mannosidase 
MSLN                  0.006   mesothelin isoform 2 preproprotein 
MSLN                  0.006   mesothelin isoform 1 preproprotein 
TRPM6                 0.006   transient receptor potential cation channel, subfami...
CCDC93                0.005   coiled-coil domain containing 93 
POLG                  0.005   DNA-directed DNA polymerase gamma 
POLG                  0.005   DNA-directed DNA polymerase gamma 
SUSD1                 0.005   sushi domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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