Guide to the Human Genome
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Name: EDEM2 Sequence: fasta or formatted (578aa) NCBI GI: 222537737
Description:

ER degradation enhancer, mannosidase alpha-like 2 isoform 1

Referenced in:

Protein Glycosylation

Other entries for this name:
alt prot [541aa] ER degradation enhancer, mannosidase alpha-like 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         42           2
 C cysteine            1.6          9           2
 D aspartate           5.9         34           2
 E glutamate           6.6         38           2
 F phenylalanine       5.4         31           2
 G glycine             7.6         44           2
 H histidine           2.2         13           2
 I isoleucine          4.2         24           1
 K lysine              4.3         25           2
 L leucine            11.8         68           2
 M methionine          2.2         13           1
 N asparagine          3.3         19           2
 P proline             6.4         37           2
 Q glutamine           3.1         18           1
 R arginine            4.7         27           1
 S serine              5.9         34           2
 T threonine           5.4         31           1
 V valine              6.4         37           2
 W tryptophan          1.7         10           1
 Y tyrosine            4.2         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ER degradation enhancer, mannosidase alpha-like 2 i... 
EDEM2                 0.913   ER degradation enhancer, mannosidase alpha-like 2 i...
EDEM1                 0.284   ER degradation enhancer, mannosidase alpha-like 1 [Ho...
EDEM3                 0.254   ER degradation enhancer, mannosidase alpha-like 3 [...
MAN1A2                0.145   mannosidase, alpha, class 1A, member 2 
MAN1C1                0.142   mannosidase, alpha, class 1C, member 1 
MAN1A1                0.139   mannosidase, alpha, class 1A, member 1 
MAN1B1                0.127   alpha 1,2-mannosidase 
MSLN                  0.006   mesothelin isoform 2 preproprotein 
MSLN                  0.006   mesothelin isoform 1 preproprotein 
TRPM6                 0.005   transient receptor potential cation channel, subfami...
CCDC93                0.004   coiled-coil domain containing 93 
POLG                  0.004   DNA-directed DNA polymerase gamma 
POLG                  0.004   DNA-directed DNA polymerase gamma 
SUSD1                 0.004   sushi domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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