Guide to the Human Genome
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Name: KIAA1239 Sequence: fasta or formatted (1742aa) NCBI GI: 222418587
Description:

hypothetical protein LOC57495

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         95           2
 C cysteine            2.9         50           2
 D aspartate           5.4         94           2
 E glutamate           7.2        125           3
 F phenylalanine       3.7         65           2
 G glycine             4.9         86           2
 H histidine           2.6         45           2
 I isoleucine          6.8        119           2
 K lysine              5.8        101           2
 L leucine            11.5        201           3
 M methionine          1.9         33           1
 N asparagine          4.8         83           2
 P proline             3.4         60           1
 Q glutamine           3.3         57           2
 R arginine            4.9         86           2
 S serine              8.4        147           3
 T threonine           5.7        100           3
 V valine              6.3        109           2
 W tryptophan          1.7         29           2
 Y tyrosine            3.3         57           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57495 
NWD1                  0.056   NACHT and WD repeat domain containing 1 
TEP1                  0.007   telomerase-associated protein 1 
SPAG16                0.007   sperm associated antigen 16 isoform 1 
FBXW7                 0.007   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.007   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.007   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR48                 0.007   WD repeat domain 48 
WDR5                  0.006   WD repeat domain 5 
WDR5                  0.006   WD repeat domain 5 
WDR88                 0.006   PQQ repeat and WD repeat domain containing 
WDR86                 0.006   WD repeat domain 86 
SMU1                  0.005   smu-1 suppressor of mec-8 and unc-52 homolog 
WDR5B                 0.005   WD repeat domain 5B 
TBL1X                 0.005   transducin beta-like 1X isoform b 
TBL1X                 0.005   transducin beta-like 1X isoform b 
TBL1X                 0.005   transducin beta-like 1X isoform a 
TBL1X                 0.005   transducin beta-like 1X isoform a 
KATNB1                0.005   katanin p80 subunit B 1 
NPHP3                 0.005   nephrocystin 3 
FBXW11                0.005   F-box and WD repeat domain containing 11 isoform C [...
TBL1XR1               0.005   transducin (beta)-like 1 X-linked receptor 1 
FBXW11                0.005   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.005   F-box and WD repeat domain containing 11 isoform B [...
WDR69                 0.005   WD repeat domain 69 
SPATA5                0.005   spermatogenesis associated 5 
BTRC                  0.005   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.005   beta-transducin repeat containing protein isoform 1 ...
FILIP1                0.004   filamin A interacting protein 1 
WDR49                 0.004   WD repeat domain 49 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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