Guide to the Human Genome
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Name: TCTN3 Sequence: fasta or formatted (459aa) NCBI GI: 221136777
Description:

tectonic 3 isoform b precursor

Referenced in:

Hedgehog and Related Pathways

Other entries for this name:
alt prot [607aa] tectonic 3 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         24           2
 C cysteine            5.0         23           3
 D aspartate           4.1         19           2
 E glutamate           2.2         10           1
 F phenylalanine       5.4         25           2
 G glycine             5.7         26           2
 H histidine           1.5          7           1
 I isoleucine          3.9         18           1
 K lysine              3.1         14           2
 L leucine            10.2         47           4
 M methionine          1.5          7           1
 N asparagine          4.4         20           2
 P proline             8.1         37           2
 Q glutamine           5.9         27           2
 R arginine            5.0         23           1
 S serine             10.7         49           3
 T threonine           6.5         30           2
 V valine              8.5         39           2
 W tryptophan          1.1          5           1
 Y tyrosine            2.0          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tectonic 3 isoform b precursor 
TCTN3                 0.513   tectonic 3 isoform a precursor 
TCTN1                 0.074   tectonic family member 1 isoform 2 
TCTN1                 0.074   tectonic family member 1 isoform 3 
TCTN1                 0.068   tectonic family member 1 isoform 1 
TCTN2                 0.048   tectonic family member 2 isoform 2 
TCTN2                 0.048   tectonic family member 2 isoform 1 
KRTAP4-9              0.009   PREDICTED: keratin associated protein 4-9 
SHANK1                0.009   SH3 and multiple ankyrin repeat domains 1 
SGEF                  0.009   Src homology 3 domain-containing guanine nucleotide...
PELP1                 0.009   proline, glutamic acid and leucine rich protein 1 [...
TNRC4                 0.009   trinucleotide repeat containing 4 
ZNF469                0.008   zinc finger protein 469 
PLXNB1                0.008   plexin B1 
PLXNB1                0.008   plexin B1 
ANK3                  0.008   ankyrin 3 isoform 1 
TNS3                  0.008   tensin 3 
CHRD                  0.007   chordin 
LOC100292909          0.007   PREDICTED: hypothetical protein 
SPATA3                0.007   testis and spermatogenesis cell apoptosis related pr...
LOC100134147          0.007   PREDICTED: hypothetical protein 
INTS1                 0.007   integrator complex subunit 1 
KNDC1                 0.007   kinase non-catalytic C-lobe domain (KIND) containin...
VWA5B2                0.005   von Willebrand factor A domain containing 5B2 [Homo...
MUC2                  0.005   mucin 2 precursor 
LOC100294420          0.005   PREDICTED: similar to mucin 2 
EIF3F                 0.005   eukaryotic translation initiation factor 3, subunit 5...
EIF4G1                0.005   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.005   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.005   eukaryotic translation initiation factor 4 gamma, 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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