Guide to the Human Genome
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Name: TCTN3 Sequence: fasta or formatted (607aa) NCBI GI: 221136774
Description:

tectonic 3 isoform a precursor

Referenced in:

Hedgehog and Related Pathways

Other entries for this name:
alt prot [459aa] tectonic 3 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         37           2
 C cysteine            4.0         24           3
 D aspartate           3.3         20           2
 E glutamate           2.6         16           1
 F phenylalanine       5.9         36           2
 G glycine             6.4         39           2
 H histidine           1.3          8           1
 I isoleucine          4.0         24           1
 K lysine              3.0         18           2
 L leucine            10.0         61           4
 M methionine          1.2          7           1
 N asparagine          4.9         30           2
 P proline             7.6         46           2
 Q glutamine           6.8         41           2
 R arginine            4.4         27           1
 S serine             10.2         62           3
 T threonine           6.9         42           2
 V valine              8.2         50           2
 W tryptophan          1.0          6           1
 Y tyrosine            2.1         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tectonic 3 isoform a precursor 
TCTN3                 0.389   tectonic 3 isoform b precursor 
TCTN1                 0.131   tectonic family member 1 isoform 2 
TCTN1                 0.127   tectonic family member 1 isoform 1 
TCTN1                 0.113   tectonic family member 1 isoform 3 
TCTN2                 0.068   tectonic family member 2 isoform 2 
TCTN2                 0.068   tectonic family member 2 isoform 1 
GRM3                  0.008   glutamate receptor, metabotropic 3 precursor 
KRTAP4-9              0.007   PREDICTED: keratin associated protein 4-9 
SHANK1                0.007   SH3 and multiple ankyrin repeat domains 1 
SGEF                  0.007   Src homology 3 domain-containing guanine nucleotide...
PELP1                 0.007   proline, glutamic acid and leucine rich protein 1 [...
TNRC4                 0.007   trinucleotide repeat containing 4 
ZNF469                0.006   zinc finger protein 469 
PLXNB1                0.006   plexin B1 
PLXNB1                0.006   plexin B1 
ANK3                  0.006   ankyrin 3 isoform 1 
TNS3                  0.006   tensin 3 
ZCCHC14               0.006   zinc finger, CCHC domain containing 14 
CHRD                  0.005   chordin 
LOC100292909          0.005   PREDICTED: hypothetical protein 
SPATA3                0.005   testis and spermatogenesis cell apoptosis related pr...
LOC100134147          0.005   PREDICTED: hypothetical protein 
ATP10A                0.005   ATPase, class V, type 10A 
ANLN                  0.005   anillin, actin binding protein 
INTS1                 0.005   integrator complex subunit 1 
KNDC1                 0.005   kinase non-catalytic C-lobe domain (KIND) containin...
VWA5B2                0.004   von Willebrand factor A domain containing 5B2 [Homo...
MUC2                  0.004   mucin 2 precursor 
LOC100294420          0.004   PREDICTED: similar to mucin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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