Guide to the Human Genome
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Name: CACNG6 Sequence: fasta or formatted (260aa) NCBI GI: 22027554
Description:

voltage-dependent calcium channel gamma-6 subunit isoform a

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [214aa] voltage-dependent calcium channel gamma-6 subunit isoform b
alt prot [189aa] voltage-dependent calcium channel gamma-6 subunit isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         30           3
 C cysteine            3.8         10           1
 D aspartate           1.2          3           1
 E glutamate           5.8         15           2
 F phenylalanine       4.2         11           2
 G glycine            10.4         27           1
 H histidine           1.5          4           1
 I isoleucine          1.9          5           2
 K lysine              3.8         10           2
 L leucine            15.4         40           4
 M methionine          1.5          4           2
 N asparagine          2.7          7           1
 P proline             4.6         12           3
 Q glutamine           1.9          5           1
 R arginine            7.3         19           3
 S serine              5.0         13           1
 T threonine           5.4         14           2
 V valine              7.7         20           1
 W tryptophan          2.7          7           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-dependent calcium channel gamma-6 subunit is... 
CACNG6                0.788   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.404   voltage-dependent calcium channel gamma-6 subunit is...
CACNG1                0.279   voltage-dependent calcium channel gamma-1 subunit [Ho...
CLDN9                 0.030   claudin 9 
TMEM178               0.024   transmembrane protein 178 
CLDN23                0.016   claudin 23 
CACNG7                0.016   voltage-dependent calcium channel gamma-7 subunit [H...
CACNG2                0.014   voltage-dependent calcium channel gamma-2 subunit [Ho...
CACNG4                0.014   voltage-dependent calcium channel gamma-4 subunit [Ho...
LIM2                  0.014   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
LIM2                  0.014   lens intrinsic membrane protein 2, 19kDa isoform 1 [...
BAT2L                 0.014   HLA-B associated transcript 2-like 
PERP                  0.010   PERP, TP53 apoptosis effector 
TMEM114               0.010   PREDICTED: transmembrane protein 114, partial [Homo...
MPHOSPH9              0.010   M-phase phosphoprotein 9 
SLC26A11              0.010   solute carrier family 26, member 11 
TMEM114               0.008   PREDICTED: transmembrane protein 114 
GDNF                  0.008   glial cell derived neurotrophic factor isoform 2 pre...
GDNF                  0.008   glial cell derived neurotrophic factor isoform 1 prep...
TMEM114               0.008   transmembrane protein 114 
CLDN18                0.008   claudin 18 isoform 1 
LOC100293006          0.006   PREDICTED: hypothetical protein 
LOC100291332          0.006   PREDICTED: hypothetical protein XP_002347440 
LOC100289447          0.006   PREDICTED: hypothetical protein XP_002344275 
PVRL4                 0.006   poliovirus receptor-related 4 
TSPO                  0.006   translocator protein isoform PBR 
ADCY4                 0.006   adenylate cyclase 4 
RTTN                  0.006   rotatin 
OR13C9                0.006   olfactory receptor, family 13, subfamily C, member 9...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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