Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: VEPH1 Sequence: fasta or formatted (833aa) NCBI GI: 22003858
Description:

ventricular zone expressed PH domain homolog 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         53           2
 C cysteine            1.7         14           1
 D aspartate           5.0         42           2
 E glutamate           8.3         69           2
 F phenylalanine       4.3         36           2
 G glycine             4.1         34           2
 H histidine           2.8         23           2
 I isoleucine          7.1         59           2
 K lysine              7.7         64           3
 L leucine            10.6         88           3
 M methionine          2.0         17           2
 N asparagine          4.2         35           3
 P proline             4.1         34           2
 Q glutamine           5.6         47           2
 R arginine            4.7         39           2
 S serine              7.9         66           4
 T threonine           5.4         45           2
 V valine              5.0         42           2
 W tryptophan          0.8          7           1
 Y tyrosine            2.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ventricular zone expressed PH domain homolog 1 [Homo... 
SPTBN2                0.012   spectrin, beta, non-erythrocytic 2 
ACAP2                 0.010   centaurin, beta 2 
PLEKHA1               0.009   pleckstrin homology domain containing, family A (pho...
PLEKHA1               0.009   pleckstrin homology domain containing, family A (pho...
ACAP1                 0.009   centaurin beta1 
PLEKHO1               0.009   pleckstrin homology domain containing, family O memb...
ARAP1                 0.008   ArfGAP with RhoGAP domain, ankyrin repeat and PH do...
ARAP1                 0.008   ArfGAP with RhoGAP domain, ankyrin repeat and PH do...
ARAP1                 0.008   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
DGKH                  0.008   diacylglycerol kinase, eta isoform 1 
DGKH                  0.008   diacylglycerol kinase, eta isoform 2 
TIAM2                 0.008   T-cell lymphoma invasion and metastasis 2 isoform a ...
ARAP2                 0.008   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
ACAP3                 0.008   ArfGAP with coiled-coil, ankyrin repeat and PH doma...
DAPP1                 0.007   dual adaptor of phosphotyrosine and 3-phosphoinosit...
PCM1                  0.007   pericentriolar material 1 
CYTH1                 0.006   cytohesin 1 isoform 2 
CYTH1                 0.006   cytohesin 1 isoform 1 
GAS8                  0.006   growth arrest-specific 8 
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.006   SWI/SNF-related matrix-associated actin-dependent re...
PLEKHA2               0.006   pleckstrin homology domain containing, family A (ph...
RASA3                 0.006   RAS p21 protein activator 3 
PLEKHH2               0.005   pleckstrin homology domain containing, family H (wi...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press