Guide to the Human Genome
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Name: WDR12 Sequence: fasta or formatted (423aa) NCBI GI: 217330644
Description:

WD repeat domain 12 protein

Referenced in:

Nucleus and Nucleolus
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         21           2
 C cysteine            2.1          9           2
 D aspartate           7.6         32           2
 E glutamate           6.6         28           2
 F phenylalanine       2.1          9           1
 G glycine             5.2         22           2
 H histidine           3.3         14           1
 I isoleucine          5.4         23           2
 K lysine              7.6         32           2
 L leucine             9.2         39           3
 M methionine          2.4         10           1
 N asparagine          2.8         12           1
 P proline             3.1         13           1
 Q glutamine           2.4         10           2
 R arginine            3.5         15           1
 S serine             11.6         49           2
 T threonine           7.1         30           2
 V valine              6.9         29           2
 W tryptophan          3.8         16           1
 Y tyrosine            2.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 12 protein 
WDR5                  0.095   WD repeat domain 5 
WDR5                  0.095   WD repeat domain 5 
WDR5B                 0.092   WD repeat domain 5B 
FBXW7                 0.088   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.088   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.088   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR69                 0.082   WD repeat domain 69 
WDR37                 0.082   WD repeat domain 37 
BTRC                  0.080   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.080   beta-transducin repeat containing protein isoform 1 ...
FBXW11                0.080   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.080   F-box and WD repeat domain containing 11 isoform A [...
NLE1                  0.080   Notchless gene homolog isoform a 
FBXW11                0.080   F-box and WD repeat domain containing 11 isoform B [...
PLRG1                 0.075   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
PAFAH1B1              0.070   platelet-activating factor acetylhydrolase, isoform I...
TBL1X                 0.070   transducin beta-like 1X isoform b 
TBL1X                 0.070   transducin beta-like 1X isoform b 
TBL1X                 0.070   transducin beta-like 1X isoform a 
TBL1X                 0.070   transducin beta-like 1X isoform a 
RBBP4                 0.067   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.067   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.067   retinoblastoma binding protein 4 isoform a 
KATNB1                0.066   katanin p80 subunit B 1 
RBBP7                 0.066   retinoblastoma binding protein 7 
CIAO1                 0.065   WD repeat domain 39 
GNB2L1                0.065   guanine nucleotide binding protein (G protein), beta ...
SNRNP40               0.064   WD repeat domain 57 (U5 snRNP specific) 
PRPF4                 0.064   PRP4 pre-mRNA processing factor 4 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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