Guide to the Human Genome
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Name: C16orf45 Sequence: fasta or formatted (187aa) NCBI GI: 215599562
Description:

hypothetical protein LOC89927 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {204aa} hypothetical protein LOC89927 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         12           1
 C cysteine            2.7          5           2
 D aspartate           8.0         15           2
 E glutamate          11.8         22           2
 F phenylalanine       1.6          3           1
 G glycine             2.7          5           1
 H histidine           0.5          1           1
 I isoleucine          6.4         12           2
 K lysine             11.8         22           2
 L leucine            10.7         20           1
 M methionine          5.9         11           2
 N asparagine          1.1          2           1
 P proline             4.3          8           3
 Q glutamine           5.9         11           1
 R arginine            7.0         13           2
 S serine              3.7          7           2
 T threonine           4.8          9           2
 V valine              4.3          8           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC89927 isoform 2 
C16orf45              0.884   hypothetical protein LOC89927 isoform 1 
MICALL2               0.116   MICAL-like 2 isoform 1 
MICALL1               0.099   molecule interacting with Rab13 
MICAL3                0.093   microtubule associated monoxygenase, calponin and L...
EHBP1L1               0.090   tangerin 
EHBP1                 0.084   EH domain binding protein 1 isoform 3 
EHBP1                 0.084   EH domain binding protein 1 isoform 3 
EHBP1                 0.084   EH domain binding protein 1 isoform 2 
EHBP1                 0.084   EH domain binding protein 1 isoform 1 
MICALCL               0.084   MICAL C-terminal like 
MICAL1                0.058   microtubule associated monoxygenase, calponin and L...
MICAL1                0.058   microtubule associated monoxygenase, calponin and L...
CCDC46                0.047   coiled-coil domain containing 46 isoform a 
MYH2                  0.041   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.041   myosin, heavy chain 2, skeletal muscle, adult [Homo...
SLK                   0.041   serine/threonine kinase 2 
MYH1                  0.041   myosin, heavy chain 1, skeletal muscle, adult [Homo...
GOLGA4                0.041   golgi autoantigen, golgin subfamily a, 4 
KIF15                 0.041   kinesin family member 15 
KIF4B                 0.038   kinesin family member 4B 
LOC728636             0.038   PREDICTED: similar to golgi autoantigen, golgin sub...
ATRIP                 0.038   ATR interacting protein isoform 2 
ATRIP                 0.038   ATR interacting protein isoform 1 
LOC440295             0.038   hypothetical protein LOC440295 
LOC647042             0.038   PREDICTED: hypothetical protein isoform 2 
KIAA1598              0.038   shootin1 isoform a 
KIAA1598              0.038   shootin1 isoform b 
CEP250                0.035   centrosomal protein 2 
TCHH                  0.035   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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