Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: STMN4 Sequence: fasta or formatted (216aa) NCBI GI: 21361947
Description:

stathmin-like 4

Referenced in:

Cytoskeleton
Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         19           2
 C cysteine            2.8          6           1
 D aspartate           4.6         10           1
 E glutamate          15.3         33           2
 F phenylalanine       2.8          6           1
 G glycine             1.9          4           1
 H histidine           1.9          4           1
 I isoleucine          3.2          7           1
 K lysine             11.6         25           2
 L leucine             9.3         20           2
 M methionine          2.8          6           1
 N asparagine          4.6         10           3
 P proline             3.2          7           2
 Q glutamine           4.2          9           1
 R arginine            8.3         18           3
 S serine              6.5         14           2
 T threonine           1.4          3           1
 V valine              3.7          8           1
 W tryptophan          1.4          3           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stathmin-like 4 
STMN2                 0.441   superiorcervical ganglia, neural specific 10 
STMN1                 0.415   stathmin 1 isoform a 
STMN1                 0.415   stathmin 1 isoform a 
STMN1                 0.415   stathmin 1 isoform a 
STMN3                 0.410   SCG10-like-protein 
STMN1                 0.351   stathmin 1 isoform b 
TNNT2                 0.056   troponin T type 2, cardiac isoform 1 
INCENP                0.056   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.056   inner centromere protein antigens 135/155kDa isofor...
MAP1A                 0.051   microtubule-associated protein 1A 
TNNT2                 0.051   troponin T type 2, cardiac isoform 4 
CALD1                 0.049   caldesmon 1 isoform 1 
BAT2D1                0.049   HBxAg transactivated protein 2 
ITSN2                 0.049   intersectin 2 isoform 3 
ITSN2                 0.049   intersectin 2 isoform 1 
ITSN2                 0.049   intersectin 2 isoform 2 
DEF6                  0.046   differentially expressed in FDCP 6 homolog 
LOC283685             0.046   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TNNT2                 0.044   troponin T type 2, cardiac isoform 3 
TNNT2                 0.044   troponin T type 2, cardiac isoform 2 
ZRSR2                 0.041   U2 small nuclear RNA auxiliary factor 1-like 2 
LOC283685             0.041   PREDICTED: golgi autoantigen, golgin subfamily a-li...
NUMA1                 0.041   nuclear mitotic apparatus protein 1 
MYH6                  0.041   myosin heavy chain 6 
CHAF1A                0.041   chromatin assembly factor 1, subunit A (p150) 
ARGLU1                0.041   arginine and glutamate rich 1 
GIGYF2                0.039   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.039   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.039   GRB10 interacting GYF protein 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press