Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 21361300
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [... 453 e-128
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 343 6e-95
gi|4503559 epithelial membrane protein 1 [Homo sapiens] 44 1e-04
gi|22748765 claudin domain containing 2 [Homo sapiens] 42 5e-04
gi|5031949 natural killer cell group 7 sequence [Homo sapiens] 39 0.003
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 39 0.004
gi|4505907 peripheral myelin protein 22 [Homo sapiens] 37 0.013
gi|24430165 peripheral myelin protein 22 [Homo sapiens] 37 0.013
gi|24430163 peripheral myelin protein 22 [Homo sapiens] 37 0.013
gi|4503561 epithelial membrane protein 2 [Homo sapiens] 37 0.013
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho... 37 0.013
gi|122937323 transmembrane protein 202 [Homo sapiens] 35 0.063
gi|119226220 membrane-spanning 4-domains, subfamily A, member 14... 34 0.082
gi|119226217 membrane-spanning 4-domains, subfamily A, member 14... 34 0.082
gi|238859653 pleckstrin homology domain containing family A memb... 33 0.14
gi|238859651 pleckstrin homology domain containing family A memb... 33 0.14
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 33 0.14
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is... 33 0.24
gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Ho... 32 0.31
gi|13899273 transmembrane protein 47 [Homo sapiens] 32 0.41
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 32 0.41
gi|22027560 voltage-dependent calcium channel gamma-6 subunit is... 32 0.41
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is... 32 0.41
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 31 0.91
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 31 0.91
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 31 0.91
gi|226437592 transmembrane protein 114 [Homo sapiens] 31 0.91
gi|7656981 claudin 15 [Homo sapiens] 31 0.91
gi|4503563 epithelial membrane protein 3 [Homo sapiens] 30 2.0
gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens] 29 2.6
>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
Length = 215
Score = 453 bits (1166), Expect = e-128
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIGE 60
MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIGE
Sbjct: 1 MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIGE 60
Query: 61 PPGQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISG 120
PPGQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISG
Sbjct: 61 PPGQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISG 120
Query: 121 IIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSW 180
IIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSW
Sbjct: 121 IIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSW 180
Query: 181 SYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR 215
SYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR
Sbjct: 181 SYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR 215
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 343 bits (880), Expect = 6e-95
Identities = 173/215 (80%), Positives = 173/215 (80%), Gaps = 42/215 (19%)
Query: 1 MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIGE 60
MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSI
Sbjct: 1 MYSFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSI-- 58
Query: 61 PPGQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISG 120
AYWNATRAFMILSALCAISG
Sbjct: 59 ----------------------------------------AYWNATRAFMILSALCAISG 78
Query: 121 IIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSW 180
IIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSW
Sbjct: 79 IIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSW 138
Query: 181 SYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR 215
SYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR
Sbjct: 139 SYILGWVAVLMTFFAGIFYMCAYRVHECRRLSTPR 173
>gi|4503559 epithelial membrane protein 1 [Homo sapiens]
Length = 157
Score = 43.5 bits (101), Expect = 1e-04
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 98 ATQAYWNATRAFMILSAL-CAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVL 156
A++ +AFMILS + C I+ ++ F T + +R F +G L +++
Sbjct: 56 ASEDALKTVQAFMILSIIFCVIALLVFVFQLF----TMEKGNRFFLSGATTLVCWLCILV 111
Query: 157 ALAIYTGVTVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYM 200
++IYT + R + +SYILGW+ +F G+ Y+
Sbjct: 112 GVSIYTS---HYANRDGTQYHHGYSYILGWICFCFSFIIGVLYL 152
>gi|22748765 claudin domain containing 2 [Homo sapiens]
Length = 167
Score = 41.6 bits (96), Expect = 5e-04
Identities = 45/200 (22%), Positives = 73/200 (36%), Gaps = 55/200 (27%)
Query: 3 SFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIGEPP 62
S GG+ + V +L+V++ AT++W + + H GLW+ C C SI
Sbjct: 6 SLQSGGILLSLVANVLMVLSTATNYWTRQQEG----HSGLWQECNHGIC----SSI---- 53
Query: 63 GQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISGII 122
Q T A M+L+ + G++
Sbjct: 54 -----------------------------------PCQTTLAVTVACMVLAVGVGVVGMV 78
Query: 123 MGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSWSY 182
MG+ + R + F L ++ AL YT V ++ F FSWSY
Sbjct: 79 MGLRIRCDE---GESLRGQTTSAFLFLGGLLLLTALIGYT-VKNAWKNNVF----FSWSY 130
Query: 183 ILGWVAVLMTFFAGIFYMCA 202
GW+A+ + AG ++ A
Sbjct: 131 FSGWLALPFSILAGFCFLLA 150
>gi|5031949 natural killer cell group 7 sequence [Homo sapiens]
Length = 165
Score = 39.3 bits (90), Expect = 0.003
Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 54/201 (26%)
Query: 3 SFMGGGLFCAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIGEPP 62
+ +GG L G + ++A++TD W + AH GLW P
Sbjct: 8 ALLGGSL-----GLMFCLIALSTDFWFEAVGPTHSAHSGLW-----------------PT 45
Query: 63 GQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISGII 122
G G Y + T+ F I++ L A+ +
Sbjct: 46 GHGD-------------------------------IISGYIHVTQTFSIMAVLWALVSVS 74
Query: 123 MGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSWSY 182
+++ F P + F++ + +V+A+A+YT FSWS+
Sbjct: 75 FLVLS-CFPSLFPPGHGPLVSTTAAFAAAISMVVAMAVYTSERWDQPPHPQIQTFFSWSF 133
Query: 183 ILGWVAVLMTFFAGIFYMCAY 203
LGWV+ ++ G + A+
Sbjct: 134 YLGWVSAILLLCTGALSLGAH 154
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 38.5 bits (88), Expect = 0.004
Identities = 54/214 (25%), Positives = 83/214 (38%), Gaps = 39/214 (18%)
Query: 6 GGGLFCAWVGTILLVVAMATDHWMQYRLSGS-----FAHQGLWRYCLG-----NKCYLQT 55
G G + +G ++ A D W L + F +QGLWR C+ +C
Sbjct: 8 GLGFVVSLIGIAGIIAATCMDQWSTQDLYNNPVTAVFNYQGLWRSCVRESSGFTECRGYF 67
Query: 56 DSIGEPPGQGPGRAWGKSRADLGAQGHLYSRW--RTLRLKEGKGATQAYWNATRAFM-IL 112
+G P RA LGA G L S + + +R+ + + +A T M I+
Sbjct: 68 TLLGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIV 127
Query: 113 SALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGV--TVSFLG 170
S LCAI+ G+ FA+ T F + +YTG+ V +
Sbjct: 128 SGLCAIA----GVSVFANMLV-----------------TNFWMSTANMYTGMGGMVQTVQ 166
Query: 171 RRFGDWRFSWSYILGWVAVLMTFFAGIFYMCAYR 204
R+ F + +GWVA +T G+ A R
Sbjct: 167 TRY---TFGAALFVGWVAGGLTLIGGVMMCIACR 197
>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 37.0 bits (84), Expect = 0.013
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 105 ATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGV 164
+ +A MILS + +I + + F T ++ R + GI + L V+ A AIYT
Sbjct: 64 SVQATMILSIIFSILSLFL---FFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVR 120
Query: 165 TVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYM 200
+ D+ + ++YIL WVA + +G+ Y+
Sbjct: 121 HPEW--HLNSDYSYGFAYILAWVAFPLALLSGVIYV 154
>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 37.0 bits (84), Expect = 0.013
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 105 ATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGV 164
+ +A MILS + +I + + F T ++ R + GI + L V+ A AIYT
Sbjct: 64 SVQATMILSIIFSILSLFL---FFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVR 120
Query: 165 TVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYM 200
+ D+ + ++YIL WVA + +G+ Y+
Sbjct: 121 HPEW--HLNSDYSYGFAYILAWVAFPLALLSGVIYV 154
>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 37.0 bits (84), Expect = 0.013
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 105 ATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGV 164
+ +A MILS + +I + + F T ++ R + GI + L V+ A AIYT
Sbjct: 64 SVQATMILSIIFSILSLFL---FFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVR 120
Query: 165 TVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYM 200
+ D+ + ++YIL WVA + +G+ Y+
Sbjct: 121 HPEW--HLNSDYSYGFAYILAWVAFPLALLSGVIYV 154
>gi|4503561 epithelial membrane protein 2 [Homo sapiens]
Length = 167
Score = 37.0 bits (84), Expect = 0.013
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 105 ATRAFMILSA-LCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTG 163
A +A MILS LC I+ I + F + R I+ S L V++A +IYT
Sbjct: 63 AVQATMILSTILCCIAFFIFVLQLFR----LKQGERFVLTSIIQLMSCLCVMIAASIYTD 118
Query: 164 VTVSFLGRRFG------DWRFSWSYILGWVAVLMTFFAGIFYM 200
+ + + +SYIL WVA TF +G+ Y+
Sbjct: 119 RREDIHDKNAKFYPVTREGSYGYSYILAWVAFACTFISGMMYL 161
>gi|4502539 voltage-dependent calcium channel gamma-1 subunit
[Homo sapiens]
Length = 222
Score = 37.0 bits (84), Expect = 0.013
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 9 LFCAWVGTILLVVAMATDHWM-------QYRLSGSFAHQGLWRYC 46
LFC G +L + A+ TDHW + + AH GLWR C
Sbjct: 13 LFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRIC 57
>gi|122937323 transmembrane protein 202 [Homo sapiens]
Length = 273
Score = 34.7 bits (78), Expect = 0.063
Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 46/198 (23%)
Query: 8 GLFCAWVGTILLVVAMATDHWMQYRL--SGSFAHQGLWRYCLGNKCYLQTDSIGEPPGQG 65
G C++ ++L+++AM+ +W+Q+ + +G + GLW C C+ T +PP
Sbjct: 61 GSLCSF--SLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTP---KPP--- 112
Query: 66 PGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISGIIMGI 125
Y +RAF ++S ++G+
Sbjct: 113 -----------------------------------YYLQYSRAFFLISVFTILTGLGWLF 137
Query: 126 MAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGRRFGDWRFSWSYILG 185
++ + ++ F S ++L L ++ V + R + W+Y L
Sbjct: 138 SSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVA-QVHWHTRDAMESDLLWTYYLN 196
Query: 186 WVAVLMTFFAGIFYMCAY 203
W + + FAGI + Y
Sbjct: 197 WCSDIFYMFAGIISLLNY 214
>gi|119226220 membrane-spanning 4-domains, subfamily A, member 14
isoform 2 [Homo sapiens]
Length = 662
Score = 34.3 bits (77), Expect = 0.082
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 111 ILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVL 156
++S+L AI+GI I+++ HQ + ++ P I FS TLF+VL
Sbjct: 98 VISSLVAITGITFTILSYRHQDKYCQM--PSFEEICVFSRTLFIVL 141
>gi|119226217 membrane-spanning 4-domains, subfamily A, member 14
isoform 1 [Homo sapiens]
Length = 679
Score = 34.3 bits (77), Expect = 0.082
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 111 ILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVL 156
++S+L AI+GI I+++ HQ + ++ P I FS TLF+VL
Sbjct: 115 VISSLVAITGITFTILSYRHQDKYCQM--PSFEEICVFSRTLFIVL 158
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 33.5 bits (75), Expect = 0.14
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 43 WRYCLGNKCYLQTDSIGEP-------PGQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEG 95
W LG + D G+P PG+GPG G G +G + RL G
Sbjct: 144 WLRALGRASRAEGDDYGQPRSPARPQPGEGPGGPGGPPEVSRGEEGRISESPEVTRLSRG 203
Query: 96 KG 97
+G
Sbjct: 204 RG 205
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 33.5 bits (75), Expect = 0.14
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 43 WRYCLGNKCYLQTDSIGEP-------PGQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEG 95
W LG + D G+P PG+GPG G G +G + RL G
Sbjct: 144 WLRALGRASRAEGDDYGQPRSPARPQPGEGPGGPGGPPEVSRGEEGRISESPEVTRLSRG 203
Query: 96 KG 97
+G
Sbjct: 204 RG 205
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 33.5 bits (75), Expect = 0.14
Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 39/200 (19%)
Query: 20 VVAMATDHWMQYRL-----SGSFAHQGLWRYCLG-----NKCYLQTDSIGEPPGQGPGRA 69
+ A D W L + F ++GLWR C+ +C +G P RA
Sbjct: 22 IAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVRQSSGFTECRPYFTILGLPAMLQAVRA 81
Query: 70 WGKSRADLGAQGHLYSRW--RTLRLKEGKGATQAYWNATRAFM-ILSALCAISGIIMGIM 126
LGA G L S + + +R+ + + +A T M I+S LCAI+ G+
Sbjct: 82 LMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIA----GVS 137
Query: 127 AFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGV--TVSFLGRRFGDWRFSWSYIL 184
FA+ T F + +YTG+ V + R+ F + +
Sbjct: 138 VFANMLV-----------------TNFWMSTANMYTGMGGMVQTVQTRY---TFGAALFV 177
Query: 185 GWVAVLMTFFAGIFYMCAYR 204
GWVA +T G+ A R
Sbjct: 178 GWVAGGLTLIGGVMMCIACR 197
>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
isoform a [Homo sapiens]
Length = 275
Score = 32.7 bits (73), Expect = 0.24
Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 44/201 (21%)
Query: 15 GTILLVVAMATDHWMQYRLSGSFA------------HQGLWRYCLGNKCYLQTDSIGEPP 62
G LL +A++TD+W+ Y G H GLWR C
Sbjct: 20 GLGLLGIAVSTDYWL-YLEEGVIVPQNQSTEIKMSLHSGLWRVCF-------------LA 65
Query: 63 GQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISGII 122
G+ GR + + L S LK + AT F ++S G I
Sbjct: 66 GEERGRCFTIEYV-MPMNTQLTSESTVNVLKMIRSATP--------FPLVSLFFMFIGFI 116
Query: 123 MGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIY-TGVTVSFLGRR-----FGDW 176
+ + R F +GI F S L +V+ L +Y + + L R + ++
Sbjct: 117 LNNIGHIRP---HRTILAFVSGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAETYFNY 173
Query: 177 RFSWSYILGWVAVLMTFFAGI 197
++ WS+ ++ L+T AG+
Sbjct: 174 KYGWSFAFAAISFLLTESAGV 194
>gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Homo
sapiens]
Length = 315
Score = 32.3 bits (72), Expect = 0.31
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 105 ATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGV 164
A+ F ILS G G+ A + SR + SAGI F S+ L ++ + +Y
Sbjct: 103 ASSVFPILSVTLLFFG---GLCVAASEFHRSRHNVILSAGIFFVSAGLSNIIGIIVYISA 159
Query: 165 TVSFLGRRFG--DWRFSWSYILGWVAVLMTFFAGIFYMCAY 203
G+R + + WS+ G + ++ G+ + Y
Sbjct: 160 NAGDPGQRDSKKSYSYGWSFYFGAFSFIIAEIVGVVAVHIY 200
>gi|13899273 transmembrane protein 47 [Homo sapiens]
Length = 181
Score = 32.0 bits (71), Expect = 0.41
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 105 ATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGV 164
AT A ++ A + ++G+++ + R RP + +M F++ + V +L +Y
Sbjct: 80 ATLALLLGGAAIILIAFLVGLISIC-VGSRRRFYRPVA--VMLFAAVVLQVCSLVLYPIK 136
Query: 165 TVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFY 199
+ + + F+W Y L W A + +F I Y
Sbjct: 137 FIETVSLKIYH-EFNWGYGLAWGATIFSFGGAILY 170
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 32.0 bits (71), Expect = 0.41
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 9 LFCAWVGTILLVVAMATDHWMQ---YRLSGSF----AHQGLWRYC 46
L A VG L V+++ T+ W++ Y+ +GS AH GLW+ C
Sbjct: 43 LLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKAC 87
>gi|22027560 voltage-dependent calcium channel gamma-6 subunit
isoform c [Homo sapiens]
Length = 189
Score = 32.0 bits (71), Expect = 0.41
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 9 LFCAWVGTILLVVAMATDHWMQ---YRLSGSF----AHQGLWRYC 46
L A VG L V+++ T+ W++ Y+ +GS AH GLW+ C
Sbjct: 43 LLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKAC 87
>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
Length = 214
Score = 32.0 bits (71), Expect = 0.41
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 9 LFCAWVGTILLVVAMATDHWMQ---YRLSGSF----AHQGLWRYC 46
L A VG L V+++ T+ W++ Y+ +GS AH GLW+ C
Sbjct: 43 LLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKAC 87
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 30.8 bits (68), Expect = 0.91
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 112 LSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGR 171
LS + + G + G ++F Q + GI+F + + +++Y + +
Sbjct: 112 LSLILMVFGGMTGFLSFLLQAYLLLLL----TGILFLFGAMVTLAGISVYIAYSAAAFRE 167
Query: 172 RFG-----------DWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRR 210
D F WS LGW++ + G ++ A R RR
Sbjct: 168 ALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRR 217
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 30.8 bits (68), Expect = 0.91
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 112 LSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGR 171
LS + + G + G ++F Q + GI+F + + +++Y + +
Sbjct: 106 LSLILMVFGGMTGFLSFLLQAYLLLLL----TGILFLFGAMVTLAGISVYIAYSAAAFRE 161
Query: 172 RFG-----------DWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRR 210
D F WS LGW++ + G ++ A R RR
Sbjct: 162 ALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRR 211
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 30.8 bits (68), Expect = 0.91
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 112 LSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGR 171
LS + + G + G ++F Q + GI+F + + +++Y + +
Sbjct: 11 LSLILMVFGGMTGFLSFLLQAYLLLLL----TGILFLFGAMVTLAGISVYIAYSAAAFRE 66
Query: 172 RFG-----------DWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRR 210
D F WS LGW++ + G ++ A R RR
Sbjct: 67 ALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRR 116
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 30.8 bits (68), Expect = 0.91
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 112 LSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGR 171
LS + + G + G ++F Q + GI+F + + +++Y + +
Sbjct: 112 LSLILMVFGGMTGFLSFLLQAYLLLLL----TGILFLFGAMVTLAGISVYIAYSAAAFRE 167
Query: 172 RFG-----------DWRFSWSYILGWVAVLMTFFAGIFYMCAYRVHECRR 210
D F WS LGW++ + G ++ A R RR
Sbjct: 168 ALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFLAAARELSLRR 217
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 30.8 bits (68), Expect = 0.91
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 47/203 (23%)
Query: 8 GLFCAWVGTILLVVAMATDHWMQYRLSGSF-----AHQGLWRYCLGNKCYLQTDSIGEPP 62
G F A VG ++L V + +W + G+ + LW C TDS+G
Sbjct: 9 GFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSC-------ATDSLG--- 58
Query: 63 GQGPGRAWGKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISGII 122
+Y+ W + A Y A RA MI + L G++
Sbjct: 59 --------------------VYNCWEFPSML----ALSGYIQACRALMITAILLGFLGLL 94
Query: 123 MGIMA-----FAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYT-GVTVSFLGRRFGDW 176
+GI + +AG + + + ++A++ Y +T F +
Sbjct: 95 LGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAISWYAFNITRDFFDPLYPGT 154
Query: 177 RFSW--SYILGWVAVLMTFFAGI 197
++ + LGW A L++ G+
Sbjct: 155 KYELGPALYLGWSASLISILGGL 177
>gi|4503563 epithelial membrane protein 3 [Homo sapiens]
Length = 163
Score = 29.6 bits (65), Expect = 2.0
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 105 ATRAFMILSA-LCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTG 163
A + M+LS LC +S I+ + T R ++ G+ +++ V IY
Sbjct: 65 AVQVLMVLSLILCCLSFILFMFQLY----TMRRGGLFYATGLCQLCTSVAVFTGALIYAI 120
Query: 164 VTVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYM 200
L + F + + L WVA + +GI Y+
Sbjct: 121 HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYI 157
>gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]
Length = 161
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 150 STLFVVLALAIYTG----VTVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYM 200
S L +++A +IYT T + + G + +SYIL WVA TF + + Y+
Sbjct: 103 SYLCLMIAASIYTDRRDETTDFYYLTKEGS--YGYSYILAWVAFAFTFISSMMYL 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.141 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,401,965
Number of Sequences: 37866
Number of extensions: 358347
Number of successful extensions: 1167
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 58
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.