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Search of human proteins with 213417737
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|213417737 enoyl Coenzyme A hydratase domain containing 1
isoform 5 [Homo sapiens]
(307 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isof... 603 e-173
gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isof... 593 e-170
gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isof... 447 e-126
gi|50593027 enoyl Coenzyme A hydratase domain containing 1 isofo... 240 1e-63
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 100 3e-21
gi|157694522 enoyl Coenzyme A hydratase domain containing 1 isof... 95 9e-20
gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratas... 75 6e-14
gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein ... 72 6e-13
gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A... 70 2e-12
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 63 4e-10
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 57 3e-08
gi|221136756 chromodomain protein, Y chromosome-like isoform d [... 57 3e-08
gi|221136753 chromodomain protein, Y chromosome-like isoform d [... 57 3e-08
gi|62530384 dodecenoyl-Coenzyme A delta isomerase precursor [Hom... 55 6e-08
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 53 3e-07
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 53 3e-07
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 53 3e-07
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 53 3e-07
gi|37594469 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2 [... 53 4e-07
gi|37594471 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 1 [... 53 4e-07
gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo... 52 5e-07
gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Hom... 52 5e-07
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 49 4e-06
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 49 4e-06
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 43 3e-04
gi|215982794 myosin VA isoform 2 [Homo sapiens] 35 0.11
gi|215982791 myosin VA isoform 1 [Homo sapiens] 35 0.11
gi|35493868 otoferlin isoform b [Homo sapiens] 32 0.92
gi|35493860 otoferlin isoform d [Homo sapiens] 32 0.92
gi|26051246 tumor necrosis factor ligand superfamily, member 13 ... 30 2.1
>gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isoform
5 [Homo sapiens]
Length = 307
Score = 603 bits (1556), Expect = e-173
Identities = 307/307 (100%), Positives = 307/307 (100%)
Query: 1 MALKQEMAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKE 60
MALKQEMAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKE
Sbjct: 1 MALKQEMAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKE 60
Query: 61 DNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAV 120
DNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAV
Sbjct: 61 DNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAV 120
Query: 121 KSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKI 180
KSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKI
Sbjct: 121 KSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKI 180
Query: 181 RFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETK 240
RFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETK
Sbjct: 181 RFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETK 240
Query: 241 SLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIA 300
SLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIA
Sbjct: 241 SLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIA 300
Query: 301 KKGKFNK 307
KKGKFNK
Sbjct: 301 KKGKFNK 307
>gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isoform
1 [Homo sapiens]
Length = 301
Score = 593 bits (1528), Expect = e-170
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 7 MAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKEDNGIGI 66
MAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKEDNGIGI
Sbjct: 1 MAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKEDNGIGI 60
Query: 67 LTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTP 126
LTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTP
Sbjct: 61 LTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTP 120
Query: 127 EDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKE 186
EDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKE
Sbjct: 121 EDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKE 180
Query: 187 MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQ 246
MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQ
Sbjct: 181 MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQ 240
Query: 247 EWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIAKKGKFN 306
EWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIAKKGKFN
Sbjct: 241 EWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIAKKGKFN 300
Query: 307 K 307
K
Sbjct: 301 K 301
>gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isoform
3 [Homo sapiens]
Length = 226
Score = 447 bits (1150), Expect = e-126
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 82 MMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTPEDGMAVCMFMQNTLT 141
MMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTPEDGMAVCMFMQNTLT
Sbjct: 1 MMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTPEDGMAVCMFMQNTLT 60
Query: 142 RFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVE 201
RFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVE
Sbjct: 61 RFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVE 120
Query: 202 IIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIR 261
IIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIR
Sbjct: 121 IIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIR 180
Query: 262 ALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIAKKGKFNK 307
ALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIAKKGKFNK
Sbjct: 181 ALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIAKKGKFNK 226
>gi|50593027 enoyl Coenzyme A hydratase domain containing 1 isoform
2 [Homo sapiens]
Length = 145
Score = 240 bits (612), Expect = 1e-63
Identities = 122/127 (96%), Positives = 122/127 (96%)
Query: 7 MAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKEDNGIGI 66
MAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKEDNGIGI
Sbjct: 1 MAKSLLKTASLSGRTKLLHQTGLSLYSTSHGFYEEEVKKTLQQFPGGSIDLQKEDNGIGI 60
Query: 67 LTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTP 126
LTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTP
Sbjct: 61 LTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTP 120
Query: 127 EDGMAVC 133
E C
Sbjct: 121 ETSFNKC 127
>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
precursor [Homo sapiens]
Length = 339
Score = 99.8 bits (247), Expect = 3e-21
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 3/228 (1%)
Query: 57 LQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRG-AKNTFSSGS 115
L++E+ GI +L +N N+ S ++ L + V L++ + + +I+R F +G+
Sbjct: 82 LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 141
Query: 116 DLNAVKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMT 175
DL + + E G V ++ + LP+ ++A + G ALGGG E ACD R+
Sbjct: 142 DLKERAKMSSSEVGPFVSK-IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAA 200
Query: 176 PESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQS 235
+K+ V ++ IIP GGT RL IG A +++ A LD K A +G++ VL+
Sbjct: 201 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 260
Query: 236 SDE-TKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNE 282
+ E + +A + ++F+ P +R K ++ G E+ L L E
Sbjct: 261 NQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIE 308
>gi|157694522 enoyl Coenzyme A hydratase domain containing 1 isoform
4 [Homo sapiens]
Length = 70
Score = 94.7 bits (234), Expect = 9e-20
Identities = 47/52 (90%), Positives = 47/52 (90%)
Query: 82 MMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTPEDGMAVC 133
MMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTPE C
Sbjct: 1 MMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKSLGTPETSFNKC 52
>gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratase 1
precursor [Homo sapiens]
Length = 290
Score = 75.5 bits (184), Expect = 6e-14
Identities = 56/228 (24%), Positives = 113/228 (49%), Gaps = 10/228 (4%)
Query: 60 EDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNA 119
++N +G++ LN P +NA ++ +L + + E +++ G F++G+D+
Sbjct: 43 KNNTVGLIQLNRPKALNALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADIKE 102
Query: 120 VKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESK 179
+++L + + + + LT+ ++ P+I A V G+A GGG E CD ++ K
Sbjct: 103 MQNLSFQDCYSSKFLKHWDHLTQ-VKKPVI--AAVNGYAFGGGCELAMMCD--IIYAGEK 157
Query: 180 IRFVHKE--MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSD 237
+F E +G IP GGT RL +G A++++ ++ +++A G+V ++
Sbjct: 158 AQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVE- 216
Query: 238 ETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDL 285
+EEA + ++ V+ K+SV + E+ L E + E+ L
Sbjct: 217 --TLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGSKLEKKL 262
>gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein
[Homo sapiens]
Length = 328
Score = 72.0 bits (175), Expect = 6e-13
Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 13/222 (5%)
Query: 69 LNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVKS--LGTP 126
LN P++ NA + V +++E ++ + + +++ GA F++G DL + S L
Sbjct: 72 LNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQPK 131
Query: 127 EDGMA-VCMFMQNTLTRFM-------RLPLISVALVQGWALGGGAEFTTACDFRLMTPES 178
D +A + ++++ +TR+ R P +A V G +GGG + TACD R ++
Sbjct: 132 GDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDA 191
Query: 179 KIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLS-GALKLDSKNALNIGMVEEVLQSSD 237
+ ++G+ G RL ++IG++ + L+ A K+ + AL G+V V D
Sbjct: 192 FFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVF--PD 249
Query: 238 ETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEAL 279
+ L+ A + P +++ K ++ R+ + E+L
Sbjct: 250 KEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESL 291
>gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A
dehydrogenase [Homo sapiens]
Length = 723
Score = 70.1 bits (170), Expect = 2e-12
Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 11/208 (5%)
Query: 62 NGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVK 121
N + ++ L NP +NA S ++ + E + + K +++ GA+ FS+G+D+
Sbjct: 9 NALALIRLRNPP-VNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFS 67
Query: 122 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIR 181
+ T + + + + R VA +QG A GGG E C +R+ E+++
Sbjct: 68 APRT------FGLTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVG 121
Query: 182 FVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKS 241
+G++P GT L + G AL +++ ++ + AL +G++++V+ S
Sbjct: 122 LPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSD----P 177
Query: 242 LEEAQEWLKQFIQGPPEVIRALKKSVCS 269
+EEA + ++ P E R K + S
Sbjct: 178 VEEAIRFAQRVSDQPLESRRLCNKPIQS 205
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 62.8 bits (151), Expect = 4e-10
Identities = 45/204 (22%), Positives = 97/204 (47%), Gaps = 14/204 (6%)
Query: 64 IGILTLNNP-SRMNAFSGVMMLQLLEKVIELENWTEGK---GLIVRGAKNTFSSGSDLNA 119
+ ++ +N+P S++N S + + E + E+ W + +++ F +G+D+N
Sbjct: 49 VAVVRINSPNSKVNTLSKELHSEFSEVMNEI--WASDQIRSAVLISSKPGCFIAGADINM 106
Query: 120 VKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESK 179
+ + T ++ + Q + + + VA + G LGGG E +C +R+ T + K
Sbjct: 107 LAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRK 166
Query: 180 IRFVHKE--MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQ--- 234
E +G +P GGT RL +++G AL ++ + + A +G+V+++++
Sbjct: 167 TVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEPLG 226
Query: 235 ---SSDETKSLEEAQEWLKQFIQG 255
E +++E +E F +G
Sbjct: 227 PGLKPPEERTIEYLEEVAITFAKG 250
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 56.6 bits (135), Expect = 3e-08
Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 7/262 (2%)
Query: 43 VKKTLQQFPGGSIDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGL 102
V++T + I ++K+D IL S N+ + +M ++ + + + K +
Sbjct: 278 VRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREV-QSALSTAAADDSKLV 336
Query: 103 IVRGAKNTFSSGSD-LNAVKSL--GTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWAL 159
++ + F G D + ++ L + + ++N + F++ + V G A+
Sbjct: 337 LLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAI 396
Query: 160 GGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLD 219
G GA CD ++ + + G P T +I+G A ++L KL
Sbjct: 397 GLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLT 456
Query: 220 SKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEAL 279
++ A G+V +V T +E +K+ P V+ K V ++ LE+A
Sbjct: 457 AQEACGKGLVSQVFWPGTFT---QEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 513
Query: 280 QNERDLLGTVWGGPANLEAIAK 301
+ E ++L +WG ++++ K
Sbjct: 514 ERECEVLKKIWGSAQGMDSMLK 535
>gi|221136756 chromodomain protein, Y chromosome-like isoform d
[Homo sapiens]
Length = 412
Score = 56.6 bits (135), Expect = 3e-08
Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 7/262 (2%)
Query: 43 VKKTLQQFPGGSIDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGL 102
V++T + I ++K+D IL S N+ + +M ++ + + + K +
Sbjct: 146 VRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREV-QSALSTAAADDSKLV 204
Query: 103 IVRGAKNTFSSGSD-LNAVKSL--GTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWAL 159
++ + F G D + ++ L + + ++N + F++ + V G A+
Sbjct: 205 LLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAI 264
Query: 160 GGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLD 219
G GA CD ++ + + G P T +I+G A ++L KL
Sbjct: 265 GLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLT 324
Query: 220 SKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEAL 279
++ A G+V +V T +E +K+ P V+ K V ++ LE+A
Sbjct: 325 AQEACGKGLVSQVFWPGTFT---QEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 381
Query: 280 QNERDLLGTVWGGPANLEAIAK 301
+ E ++L +WG ++++ K
Sbjct: 382 ERECEVLKKIWGSAQGMDSMLK 403
>gi|221136753 chromodomain protein, Y chromosome-like isoform d
[Homo sapiens]
Length = 412
Score = 56.6 bits (135), Expect = 3e-08
Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 7/262 (2%)
Query: 43 VKKTLQQFPGGSIDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGL 102
V++T + I ++K+D IL S N+ + +M ++ + + + K +
Sbjct: 146 VRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREV-QSALSTAAADDSKLV 204
Query: 103 IVRGAKNTFSSGSD-LNAVKSL--GTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWAL 159
++ + F G D + ++ L + + ++N + F++ + V G A+
Sbjct: 205 LLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAI 264
Query: 160 GGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLD 219
G GA CD ++ + + G P T +I+G A ++L KL
Sbjct: 265 GLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLT 324
Query: 220 SKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEAL 279
++ A G+V +V T +E +K+ P V+ K V ++ LE+A
Sbjct: 325 AQEACGKGLVSQVFWPGTFT---QEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 381
Query: 280 QNERDLLGTVWGGPANLEAIAK 301
+ E ++L +WG ++++ K
Sbjct: 382 ERECEVLKKIWGSAQGMDSMLK 403
>gi|62530384 dodecenoyl-Coenzyme A delta isomerase precursor [Homo
sapiens]
Length = 302
Score = 55.5 bits (132), Expect = 6e-08
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 6/191 (3%)
Query: 63 GIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 121
G+ ++ NP +N+ S + +L+ + +LEN +G+I+ + FS+G DL +
Sbjct: 56 GVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114
Query: 122 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLM--TPESK 179
+P +Q R + L+ V+ + G GG CD+R++ P
Sbjct: 115 GR-SPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 173
Query: 180 IRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVL-QSSDE 238
I ++GII + L IG R A + L L AL +G+V++V+ + +
Sbjct: 174 IGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQ 233
Query: 239 TKSLEEAQEWL 249
+ +L +W+
Sbjct: 234 STALSAIAQWM 244
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b
[Homo sapiens]
Length = 554
Score = 53.1 bits (126), Expect = 3e-07
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 7/250 (2%)
Query: 55 IDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSG 114
I ++KED I+ + NA + ++ +++ + + K ++ A + F G
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVN-ALNSAAADDSKLVLFSAAGSVFCCG 344
Query: 115 SDLNA-VKSLGTPEDGMAVCMF--MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDF 171
D VK L + ++ M ++N + F++ V V G A+G GA CD
Sbjct: 345 LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 404
Query: 172 RLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEE 231
++ + + G P + +++G A ++L KL ++ A G+V +
Sbjct: 405 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 464
Query: 232 VLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
V + T +E +K+ P V+ K V +L LE+A + E ++L +W
Sbjct: 465 VFLTGTFT---QEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWS 521
Query: 292 GPANLEAIAK 301
+E++ K
Sbjct: 522 SAQGIESMLK 531
>gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform
a [Homo sapiens]
Length = 540
Score = 53.1 bits (126), Expect = 3e-07
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 7/250 (2%)
Query: 55 IDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSG 114
I ++KED I+ + NA + ++ +++ + + K ++ A + F G
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVN-ALNSAAADDSKLVLFSAAGSVFCCG 344
Query: 115 SDLNA-VKSLGTPEDGMAVCMF--MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDF 171
D VK L + ++ M ++N + F++ V V G A+G GA CD
Sbjct: 345 LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 404
Query: 172 RLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEE 231
++ + + G P + +++G A ++L KL ++ A G+V +
Sbjct: 405 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 464
Query: 232 VLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
V + T +E +K+ P V+ K V +L LE+A + E ++L +W
Sbjct: 465 VFLTGTFT---QEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWS 521
Query: 292 GPANLEAIAK 301
+E++ K
Sbjct: 522 SAQGIESMLK 531
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 53.1 bits (126), Expect = 3e-07
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 7/250 (2%)
Query: 55 IDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSG 114
I ++KED I+ + NA + ++ +++ + + K ++ A + F G
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVN-ALNSAAADDSKLVLFSAAGSVFCCG 344
Query: 115 SDLNA-VKSLGTPEDGMAVCMF--MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDF 171
D VK L + ++ M ++N + F++ V V G A+G GA CD
Sbjct: 345 LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 404
Query: 172 RLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEE 231
++ + + G P + +++G A ++L KL ++ A G+V +
Sbjct: 405 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 464
Query: 232 VLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
V + T +E +K+ P V+ K V +L LE+A + E ++L +W
Sbjct: 465 VFLTGTFT---QEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWS 521
Query: 292 GPANLEAIAK 301
+E++ K
Sbjct: 522 SAQGIESMLK 531
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 53.1 bits (126), Expect = 3e-07
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 7/250 (2%)
Query: 55 IDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSG 114
I ++KED I+ + NA + ++ +++ + + K ++ A + F G
Sbjct: 286 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVN-ALNSAAADDSKLVLFSAAGSVFCCG 344
Query: 115 SDLNA-VKSLGTPEDGMAVCMF--MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDF 171
D VK L + ++ M ++N + F++ V V G A+G GA CD
Sbjct: 345 LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 404
Query: 172 RLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEE 231
++ + + G P + +++G A ++L KL ++ A G+V +
Sbjct: 405 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 464
Query: 232 VLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
V + T +E +K+ P V+ K V +L LE+A + E ++L +W
Sbjct: 465 VFLTGTFT---QEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWS 521
Query: 292 GPANLEAIAK 301
+E++ K
Sbjct: 522 SAQGIESMLK 531
>gi|37594469 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2
[Homo sapiens]
Length = 338
Score = 52.8 bits (125), Expect = 4e-07
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 9/185 (4%)
Query: 65 GILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKN-TFSSGSDLNAVKSL 123
G++TLN P +NA + M+ Q+ ++ + E E +I++GA F +G D+ +
Sbjct: 47 GVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEA 106
Query: 124 GTPEDGMAVCMF----MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESK 179
+ +A F M N + P VAL+ G +GGG + FR+ T +
Sbjct: 107 EKAKQKIAPVFFREEYMLNNAVGSCQKPY--VALIHGITMGGGVGLSVHGQFRVATEKCL 164
Query: 180 IRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDET 239
+G+ P GG L + G L+G +L ++ G+ + S++
Sbjct: 165 FAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTG-FRLKGRDVYRAGIATHFV-DSEKL 222
Query: 240 KSLEE 244
LEE
Sbjct: 223 AMLEE 227
>gi|37594471 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 1
[Homo sapiens]
Length = 386
Score = 52.8 bits (125), Expect = 4e-07
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 9/185 (4%)
Query: 65 GILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKN-TFSSGSDLNAVKSL 123
G++TLN P +NA + M+ Q+ ++ + E E +I++GA F +G D+ +
Sbjct: 47 GVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEA 106
Query: 124 GTPEDGMAVCMF----MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESK 179
+ +A F M N + P VAL+ G +GGG + FR+ T +
Sbjct: 107 EKAKQKIAPVFFREEYMLNNAVGSCQKPY--VALIHGITMGGGVGLSVHGQFRVATEKCL 164
Query: 180 IRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDET 239
+G+ P GG L + G L+G +L ++ G+ + S++
Sbjct: 165 FAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTG-FRLKGRDVYRAGIATHFV-DSEKL 222
Query: 240 KSLEE 244
LEE
Sbjct: 223 AMLEE 227
>gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo
sapiens]
Length = 303
Score = 52.4 bits (124), Expect = 5e-07
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 1/176 (0%)
Query: 62 NGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDLNAVK 121
+GI + L+NP + N S M+ L ++ + + K +I+ FSSG DL +
Sbjct: 54 DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELT 113
Query: 122 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIR 181
+ V + P+ +A+V G A G + +CD + + +S
Sbjct: 114 EEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFA 173
Query: 182 FVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSD 237
+G+ S G L + + AL++L + ++ AL G++ +V+ ++
Sbjct: 174 TPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAE 228
>gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Homo
sapiens]
Length = 261
Score = 52.4 bits (124), Expect = 5e-07
Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 34/224 (15%)
Query: 61 DNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVR-GAKNTFSSGSDLNA 119
D GI + +N PS NA V + +LLE + +L + + L+ R G K F +G+DL
Sbjct: 39 DQGITEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKE 98
Query: 120 VKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESK 179
+ + E G+ V RL + + +G
Sbjct: 99 REQMSEAEVGVFV-----------QRLRGLMNDIASSAVMG------------------- 128
Query: 180 IRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEE-VLQSSDE 238
+ G++P GGT RL +G A +++ +L A +G+V V Q+ +
Sbjct: 129 --LIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEG 186
Query: 239 TKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNE 282
+ + A+ ++ + P +R K ++ G E+ + + E
Sbjct: 187 DAAYQRARALAQEILPQAPIAVRLGKVAIDRGTEVDIASGMAIE 230
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 49.3 bits (116), Expect = 4e-06
Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 7/250 (2%)
Query: 55 IDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSG 114
I ++KED I+ + NA + ++ +++ + + K ++ A + F G
Sbjct: 287 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVN-ALNSAAADDSKLVLFSAAGSVFCCG 345
Query: 115 SDLNA-VKSLGTPEDGMAVCMF--MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDF 171
D V+ L + ++ M ++N + F++ V V G A+G GA CD
Sbjct: 346 LDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 405
Query: 172 RLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEE 231
++ + + G P + +++G A ++L KL ++ A G+V +
Sbjct: 406 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 465
Query: 232 VLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
V + T +E +K+ V+ K V +L LE+A + E ++L +W
Sbjct: 466 VFLTGTFT---QEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWS 522
Query: 292 GPANLEAIAK 301
+E++ K
Sbjct: 523 SAQGIESMLK 532
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 49.3 bits (116), Expect = 4e-06
Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 7/250 (2%)
Query: 55 IDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSG 114
I ++KED I+ + NA + ++ +++ + + K ++ A + F G
Sbjct: 287 IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVN-ALNSAAADDSKLVLFSAAGSVFCCG 345
Query: 115 SDLNA-VKSLGTPEDGMAVCMF--MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDF 171
D V+ L + ++ M ++N + F++ V V G A+G GA CD
Sbjct: 346 LDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 405
Query: 172 RLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEE 231
++ + + G P + +++G A ++L KL ++ A G+V +
Sbjct: 406 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 465
Query: 232 VLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
V + T +E +K+ V+ K V +L LE+A + E ++L +W
Sbjct: 466 VFLTGTFT---QEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWS 522
Query: 292 GPANLEAIAK 301
+E++ K
Sbjct: 523 SAQGIESMLK 532
>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
Length = 506
Score = 43.1 bits (100), Expect = 3e-04
Identities = 50/248 (20%), Positives = 105/248 (42%), Gaps = 7/248 (2%)
Query: 55 IDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSG 114
I ++KE+ IL + S NA + +M ++ + + K L++ + F SG
Sbjct: 252 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAAT-DDSKLLLLSAVGSVFCSG 310
Query: 115 SDLNAV---KSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDF 171
D + + S ++ + +++ + F++ V + G ALG GA CD
Sbjct: 311 LDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDI 370
Query: 172 RLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEE 231
+ ++ + + + + P+ + +I+G A ++L KL ++ A + G+V +
Sbjct: 371 VWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQ 430
Query: 232 VLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
V T +E +K+ V+ K V S + LE+ + E +L +W
Sbjct: 431 VFW---PTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWS 487
Query: 292 GPANLEAI 299
L+++
Sbjct: 488 SSKGLDSL 495
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 64 IGILTLNNPS-RMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFS---SGSDLNA 119
IG +TLNN R + S +Q+ V +LE W K L+ GAK T + L
Sbjct: 1669 IGAITLNNLLLRKDMCSWSKGMQIRYNVSQLEEWLRDKNLMNSGAKETLEPLIQAAQLLQ 1728
Query: 120 VKSLGTPEDGMAVCMFMQNTLT 141
VK T +D A+C M N LT
Sbjct: 1729 VKK-KTDDDAEAICS-MCNALT 1748
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 64 IGILTLNNPS-RMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFS---SGSDLNA 119
IG +TLNN R + S +Q+ V +LE W K L+ GAK T + L
Sbjct: 1696 IGAITLNNLLLRKDMCSWSKGMQIRYNVSQLEEWLRDKNLMNSGAKETLEPLIQAAQLLQ 1755
Query: 120 VKSLGTPEDGMAVCMFMQNTLT 141
VK T +D A+C M N LT
Sbjct: 1756 VKK-KTDDDAEAICS-MCNALT 1775
>gi|35493868 otoferlin isoform b [Homo sapiens]
Length = 1230
Score = 31.6 bits (70), Expect = 0.92
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 191 PSWGGTTRLVEIIGSRQALKVLSGALKLD--SKNALNIGMVEEVLQSSDETKSLEEAQE- 247
PSW T +V + +K L +KLD S+ + + + EE + + K E E
Sbjct: 492 PSWNTTGEVVVTMEPEVPIKKLETMVKLDATSEAVVKVDVAEEEKEKKKKKKGTAEEPEE 551
Query: 248 ---------WLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
W ++ + L++ SG +L +E + N L G++ G
Sbjct: 552 EEPDESMLDWWSKYFASIDTMKEQLRQQEPSGIDLEEKEEVDNTEGLKGSMKG 604
>gi|35493860 otoferlin isoform d [Homo sapiens]
Length = 1230
Score = 31.6 bits (70), Expect = 0.92
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 191 PSWGGTTRLVEIIGSRQALKVLSGALKLD--SKNALNIGMVEEVLQSSDETKSLEEAQE- 247
PSW T +V + +K L +KLD S+ + + + EE + + K E E
Sbjct: 492 PSWNTTGEVVVTMEPEVPIKKLETMVKLDATSEAVVKVDVAEEEKEKKKKKKGTAEEPEE 551
Query: 248 ---------WLKQFIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWG 291
W ++ + L++ SG +L +E + N L G++ G
Sbjct: 552 EEPDESMLDWWSKYFASIDTMKEQLRQQEPSGIDLEEKEEVDNTEGLKGSMKG 604
>gi|26051246 tumor necrosis factor ligand superfamily, member 13
isoform beta proprotein [Homo sapiens]
Length = 234
Score = 30.4 bits (67), Expect = 2.1
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 144 MRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTR 198
+R P +SVAL W GA AC L+T +++++ + +E+ + GG ++
Sbjct: 22 VREPALSVALWLSWGAALGA---VACAMALLTQQTELQSLRREVSRLQGTGGPSQ 73
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,081,047
Number of Sequences: 37866
Number of extensions: 467872
Number of successful extensions: 1286
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 43
length of query: 307
length of database: 18,247,518
effective HSP length: 102
effective length of query: 205
effective length of database: 14,385,186
effective search space: 2948963130
effective search space used: 2948963130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.