Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 205360930
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|205360930 hypothetical protein LOC57707 [Homo sapiens]
(456 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|205360930 hypothetical protein LOC57707 [Homo sapiens] 939 0.0
gi|62909985 hypothetical protein LOC140711 [Homo sapiens] 82 8e-16
gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo sapi... 79 9e-15
gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo sapi... 79 9e-15
gi|194306543 oxidation resistance 1 isoform 2 [Homo sapiens] 78 1e-14
gi|194306541 oxidation resistance 1 isoform 1 [Homo sapiens] 78 1e-14
gi|89886453 TBC1 domain family, member 24 [Homo sapiens] 44 2e-04
gi|239755624 PREDICTED: hypothetical protein XP_002344645 [Homo ... 30 3.5
gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo ... 30 3.5
gi|21361759 myotubularin related protein 8 [Homo sapiens] 30 3.5
gi|94818891 type 1 tumor necrosis factor receptor shedding amino... 30 5.9
gi|94818901 type 1 tumor necrosis factor receptor shedding amino... 30 5.9
gi|239750127 PREDICTED: hypothetical protein XP_002347282 [Homo ... 30 5.9
gi|239744435 PREDICTED: hypothetical protein XP_002343144 [Homo ... 30 5.9
gi|238231392 dedicator of cytokinesis 8 [Homo sapiens] 29 7.7
>gi|205360930 hypothetical protein LOC57707 [Homo sapiens]
Length = 456
Score = 939 bits (2426), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 MGNSRSRVGRSFCSQFLPEEQAEIDQLFDALSSDKNSPNVSSKSFSLKALQNHVGEALPP 60
MGNSRSRVGRSFCSQFLPEEQAEIDQLFDALSSDKNSPNVSSKSFSLKALQNHVGEALPP
Sbjct: 1 MGNSRSRVGRSFCSQFLPEEQAEIDQLFDALSSDKNSPNVSSKSFSLKALQNHVGEALPP 60
Query: 61 EMVTRLYDGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEEKSLMIMKMISATEGP 120
EMVTRLYDGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEEKSLMIMKMISATEGP
Sbjct: 61 EMVTRLYDGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEEKSLMIMKMISATEGP 120
Query: 121 VKAREVQKFTEDLVGSVVHVLSHRQELRGWTGKEAPGPNPRVQVLAAQLLSDMKLQDGKR 180
VKAREVQKFTEDLVGSVVHVLSHRQELRGWTGKEAPGPNPRVQVLAAQLLSDMKLQDGKR
Sbjct: 121 VKAREVQKFTEDLVGSVVHVLSHRQELRGWTGKEAPGPNPRVQVLAAQLLSDMKLQDGKR 180
Query: 181 LLGPQWLDYDCDRAVIEDWVFRVPHVAIFLSVVICKGFLILCSSLDLTTLVPERQVDQGR 240
LLGPQWLDYDCDRAVIEDWVFRVPHVAIFLSVVICKGFLILCSSLDLTTLVPERQVDQGR
Sbjct: 181 LLGPQWLDYDCDRAVIEDWVFRVPHVAIFLSVVICKGFLILCSSLDLTTLVPERQVDQGR 240
Query: 241 GFESILDVLSVMYINAQLPREQRHRWCLLFSSELHGHSFSQLCGHITHRGPCVAVLEDHD 300
GFESILDVLSVMYINAQLPREQRHRWCLLFSSELHGHSFSQLCGHITHRGPCVAVLEDHD
Sbjct: 241 GFESILDVLSVMYINAQLPREQRHRWCLLFSSELHGHSFSQLCGHITHRGPCVAVLEDHD 300
Query: 301 KHVFGGFASCSWEVKPQFQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPNGLG 360
KHVFGGFASCSWEVKPQFQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPNGLG
Sbjct: 301 KHVFGGFASCSWEVKPQFQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPNGLG 360
Query: 361 MGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWAVGDPSEEQLA 420
MGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWAVGDPSEEQLA
Sbjct: 361 MGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWAVGDPSEEQLA 420
Query: 421 KGNKSILDADPEAQALLEISGHSRHSEGLREVPDDE 456
KGNKSILDADPEAQALLEISGHSRHSEGLREVPDDE
Sbjct: 421 KGNKSILDADPEAQALLEISGHSRHSEGLREVPDDE 456
>gi|62909985 hypothetical protein LOC140711 [Homo sapiens]
Length = 215
Score = 82.4 bits (202), Expect = 8e-16
Identities = 50/152 (32%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 259 PREQRHRWCLLFSSELHGHSFSQLCGHITH-RGPCVAVLEDHDKHVFGGFASCSWEVKPQ 317
PR H W L+F + G S L + GP + VL D D +FG F+S + +
Sbjct: 70 PRVTGHPWSLVFCTSRDGFSLQSLYRRMEGCSGPVLLVLRDQDGQIFGAFSSSAIRLSKG 129
Query: 318 FQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPNGLGMGGQHNYFGLWVDVDFG 377
F G FLFS P + V+ TG N ++ + + L MG FGLW+D D
Sbjct: 130 FYGTGETFLFSFSPQLKVFKWTGSNSFFV------KGDLDSLMMGSGSGRFGLWLDGDLF 183
Query: 378 KGHSRAKPTCTTYNSPQLSAQENFQFDKMEVW 409
+G S C T+N+ L+ QE F ++E W
Sbjct: 184 RGGS---SPCPTFNNEVLARQEQFCIQELEAW 212
>gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo
sapiens]
Length = 931
Score = 79.0 bits (193), Expect = 9e-15
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 240 RGFESILDVLSVMYINAQLP-REQRHRWCLLFSSELHGHSFSQLCGHITHR-GPCVAVLE 297
R ++L+ + + + +LP R Q + W L +S+ HG S L P + V++
Sbjct: 766 RPHSALLENMHIEQLARRLPARVQGYPWRLAYSTLEHGTSLKTLYRKSASLDSPVLLVIK 825
Query: 298 DHDKHVFGGFASCSWEVKPQFQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPN 357
D D +FG +A+ ++ + G FL++ P V+ +G N +++ +G +
Sbjct: 826 DMDNQIFGAYATHPFKFSDHYYGTGETFLYTFSPHFKVFKWSGENSYFI---NGD---IS 879
Query: 358 GLGMGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWA 410
L +GG FGLW+D D G S +C+T+N+ LS +E+F +EVWA
Sbjct: 880 SLELGGGGGRFGLWLDADLYHGRSN---SCSTFNNDILSKKEDFIVQDLEVWA 929
>gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo
sapiens]
Length = 942
Score = 79.0 bits (193), Expect = 9e-15
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 240 RGFESILDVLSVMYINAQLP-REQRHRWCLLFSSELHGHSFSQLCGHITHR-GPCVAVLE 297
R ++L+ + + + +LP R Q + W L +S+ HG S L P + V++
Sbjct: 777 RPHSALLENMHIEQLARRLPARVQGYPWRLAYSTLEHGTSLKTLYRKSASLDSPVLLVIK 836
Query: 298 DHDKHVFGGFASCSWEVKPQFQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPN 357
D D +FG +A+ ++ + G FL++ P V+ +G N +++ +G +
Sbjct: 837 DMDNQIFGAYATHPFKFSDHYYGTGETFLYTFSPHFKVFKWSGENSYFI---NGD---IS 890
Query: 358 GLGMGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWA 410
L +GG FGLW+D D G S +C+T+N+ LS +E+F +EVWA
Sbjct: 891 SLELGGGGGRFGLWLDADLYHGRSN---SCSTFNNDILSKKEDFIVQDLEVWA 940
>gi|194306543 oxidation resistance 1 isoform 2 [Homo sapiens]
Length = 839
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 259 PREQRHRWCLLFSSELHGHSFSQLCGHITHRG-PCVAVLEDHDKHVFGGFASCSWEVKPQ 317
PR + W L++ + HG S L +T P + V++D D VFG AS +V
Sbjct: 694 PRTIGYPWTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSDGQVFGALASEPLKVSDG 753
Query: 318 FQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPNGLGMGGQHNYFGLWVDVDFG 377
F G F+F+ CP V+ TG N M+ G + L GG F LW+D D
Sbjct: 754 FYGTGETFVFTFCPEFEVFKWTGDN---MFFIKGDM---DSLAFGGGGGEFALWLDGDLY 807
Query: 378 KGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWA 410
G S +C T+ + LS +E+F +E+WA
Sbjct: 808 HGRSH---SCKTFGNRTLSKKEDFFIQDIEIWA 837
>gi|194306541 oxidation resistance 1 isoform 1 [Homo sapiens]
Length = 846
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 259 PREQRHRWCLLFSSELHGHSFSQLCGHITHRG-PCVAVLEDHDKHVFGGFASCSWEVKPQ 317
PR + W L++ + HG S L +T P + V++D D VFG AS +V
Sbjct: 701 PRTIGYPWTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSDGQVFGALASEPLKVSDG 760
Query: 318 FQGDNRCFLFSICPSMAVYTHTGYNDHYMYLNHGQQTIPNGLGMGGQHNYFGLWVDVDFG 377
F G F+F+ CP V+ TG N M+ G + L GG F LW+D D
Sbjct: 761 FYGTGETFVFTFCPEFEVFKWTGDN---MFFIKGDM---DSLAFGGGGGEFALWLDGDLY 814
Query: 378 KGHSRAKPTCTTYNSPQLSAQENFQFDKMEVWA 410
G S +C T+ + LS +E+F +E+WA
Sbjct: 815 HGRSH---SCKTFGNRTLSKKEDFFIQDIEIWA 844
>gi|89886453 TBC1 domain family, member 24 [Homo sapiens]
Length = 553
Score = 44.3 bits (103), Expect = 2e-04
Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 60/201 (29%)
Query: 268 LLFSSELHGHSFSQLCGHITHRGPCVAVLEDHDKHVFGGFASCSWEVKPQFQ------GD 321
LLFSS HG+S ++ P + +++ K V G + S W + +F G
Sbjct: 362 LLFSSLQHGYSLARFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERNKFGGKLGFFGT 421
Query: 322 NRCFLFSICPSMAVY-------------------------THTGYND------------H 344
CF+F + P + Y +H+ +D H
Sbjct: 422 GECFVFRLQPEVQRYEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLSPFLAARH 481
Query: 345 Y--------MYLNHGQQTIPNGLGMGGQHNYFGLWVDVDFGKGHSRAKPTCTTYNSPQLS 396
+ M++ G + G G GGQ L++D D +G + C T+N+ L
Sbjct: 482 FNLPSKTESMFMAGGSDCLIVG-GGGGQ----ALYIDGDLNRGRT---SHCDTFNNQPL- 532
Query: 397 AQENFQFDKMEVWAVGDPSEE 417
ENF +E W DP +
Sbjct: 533 CSENFLIAAVEAWGFQDPDTQ 553
>gi|239755624 PREDICTED: hypothetical protein XP_002344645 [Homo
sapiens]
Length = 427
Score = 30.4 bits (67), Expect = 3.5
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 5 RSRVGRSFCSQFLPEEQAEIDQLFDALSSDKNSPNVSSKSFSLKALQNHVGEALPPEMVT 64
RS++ CS F + I QL + S + + ALQ H +
Sbjct: 125 RSQLSAGLCSAF---HMSSISQLHA-----EGSDALVAAGRQAGALQTHAHVGV------ 170
Query: 65 RLYDGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEE 105
DG R G+A+GP QE+ A+ H + G EE
Sbjct: 171 --VDGEERGVAGGRAQGPGRGAGQEEAAAAAVHRVSGPGEE 209
>gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo
sapiens]
Length = 1281
Score = 30.4 bits (67), Expect = 3.5
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 47 LKALQNHVGEALPPEMVTRLYDGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEEK 106
L L+N V E LPPE GPSE +++ A HL K E
Sbjct: 1119 LAELRNQVAEPLPPE----------------PPAGPSE--VEQKLQAEAEHLWK-ELENL 1159
Query: 107 SLMIMKMISATEGPVKAREVQKFTEDLVGSVVHVLSHRQELRGWTGKE 154
+ + + EG + Q+ +VG+ V R E+ G G+E
Sbjct: 1160 AGQLQAQVEENEGLSHLNQEQEEVAQVVGARGEVAGARGEVAGARGEE 1207
>gi|21361759 myotubularin related protein 8 [Homo sapiens]
Length = 704
Score = 30.4 bits (67), Expect = 3.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 276 GHSFSQLCGHITHRGPCVAVLEDHDKHVFGGFASCSWEVKPQF 318
GH FSQ CGH+ V+ +F F C W++ QF
Sbjct: 378 GHKFSQRCGHLDGDSKEVS-------PIFTQFLDCIWQLMEQF 413
>gi|94818891 type 1 tumor necrosis factor receptor shedding
aminopeptidase regulator isoform b [Homo sapiens]
Length = 941
Score = 29.6 bits (65), Expect = 5.9
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 19 EEQAEIDQLFDALSSDKNSP--NVSSKSFSLKALQNHVGEALPPEMVTR-----LYDGMR 71
E A+I ++FD +S DK + N+ + S A ++ + + L L+D M
Sbjct: 424 ENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMA 483
Query: 72 RVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEEKSLM 109
+ T KG S+ Q ++S SH + + K++M
Sbjct: 484 SICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMM 521
>gi|94818901 type 1 tumor necrosis factor receptor shedding
aminopeptidase regulator isoform a [Homo sapiens]
Length = 948
Score = 29.6 bits (65), Expect = 5.9
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 19 EEQAEIDQLFDALSSDKNSP--NVSSKSFSLKALQNHVGEALPPEMVTR-----LYDGMR 71
E A+I ++FD +S DK + N+ + S A ++ + + L L+D M
Sbjct: 424 ENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMA 483
Query: 72 RVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEEKSLM 109
+ T KG S+ Q ++S SH + + K++M
Sbjct: 484 SICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMM 521
>gi|239750127 PREDICTED: hypothetical protein XP_002347282 [Homo
sapiens]
Length = 457
Score = 29.6 bits (65), Expect = 5.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 68 DGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEE 105
DG R G+A+GP QE+ A+ H + G EE
Sbjct: 202 DGEERGVAGGRAQGPGRGAGQEEAAAAAVHRVSGPGEE 239
>gi|239744435 PREDICTED: hypothetical protein XP_002343144 [Homo
sapiens]
Length = 278
Score = 29.6 bits (65), Expect = 5.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 68 DGMRRVDLTGKAKGPSENVSQEQFTASMSHLLKGNSEE 105
DG R G+A+GP QE+ A+ H + G EE
Sbjct: 23 DGEERGVAGGRAQGPGRGAGQEEAAAAAVHRVSGPGEE 60
>gi|238231392 dedicator of cytokinesis 8 [Homo sapiens]
Length = 2099
Score = 29.3 bits (64), Expect = 7.7
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 202 RVPHVAIFLSVVICKGFLILCSSLDLTTLVPERQVDQGRGFESILDVLSVMYINAQLPRE 261
R+ + +FL +V+ K F + S+ + + FES++ + + ++ + L ++
Sbjct: 784 RLEPLVLFLHLVLDKLFQL---SVQPMVIAGQTANFSQFAFESVVAIANSLHNSKDLSKD 840
Query: 262 QRHRWCLLFSSELHGHSFSQLCGHITHRGPCVAVLEDHDKHVFG 305
Q R CLL S + ++ + G A+L+ H +G
Sbjct: 841 QHGRNCLLASYVHYVFRLPEVQRDVPKSGAPTALLDPRSYHTYG 884
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,822,215
Number of Sequences: 37866
Number of extensions: 856330
Number of successful extensions: 1948
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1924
Number of HSP's gapped (non-prelim): 16
length of query: 456
length of database: 18,247,518
effective HSP length: 106
effective length of query: 350
effective length of database: 14,233,722
effective search space: 4981802700
effective search space used: 4981802700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.