MSR1 12041

Name: MSR1	Sequence: fasta or formatted (388aa)		NCBI GI: 20357515
Description: macrophage scavenger receptor 1 isoform type 3		Referenced in: Macrophages and Monocytes Additional Membrane Functions
Other entries for this name: alt prot [451aa] macrophage scavenger receptor 1 isoform type 1 alt prot [358aa] macrophage scavenger receptor 1 isoform type 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.4 17 2 C cysteine 1.5 6 1 D aspartate 4.4 17 1 E glutamate 9.0 35 3 F phenylalanine 3.9 15 1 G glycine 9.0 35 1 H histidine 2.3 9 1 I isoleucine 6.2 24 1 K lysine 5.9 23 1 L leucine 9.8 38 2 M methionine 2.8 11 1 N asparagine 6.4 25 2 P proline 5.2 20 2 Q glutamine 5.7 22 2 R arginine 3.9 15 1 S serine 8.2 32 2 T threonine 5.7 22 2 V valine 3.6 14 1 W tryptophan 1.3 5 1 Y tyrosine 0.8 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 macrophage scavenger receptor 1 isoform type 3 [Homo... MSR1 0.917 macrophage scavenger receptor 1 isoform type 1 [Homo... MSR1 0.874 macrophage scavenger receptor 1 isoform type 2 SCARA5 0.153 scavenger receptor class A, member 5 COLEC12 0.110 collectin sub-family member 12 SCARA3 0.088 scavenger receptor class A, member 3 isoform 1 [Homo... COL7A1 0.084 alpha 1 type VII collagen precursor COL19A1 0.080 alpha 1 type XIX collagen precursor COL1A1 0.080 alpha 1 type I collagen preproprotein COL11A2 0.080 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.080 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.080 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A1 0.077 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.077 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.077 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A2 0.076 alpha 2 type V collagen preproprotein COL2A1 0.076 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.076 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A1 0.076 alpha 1 type V collagen preproprotein COL25A1 0.075 collagen, type XXV, alpha 1 isoform 1 COL25A1 0.075 collagen, type XXV, alpha 1 isoform 2 COL9A2 0.075 alpha 2 type IX collagen COL23A1 0.075 collagen, type XXIII, alpha 1 COL4A5 0.075 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.075 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.075 type IV collagen alpha 5 isoform 3 precursor MARCO 0.073 macrophage receptor with collagenous structure COL9A3 0.073 alpha 3 type IX collagen COL20A1 0.073 collagen, type XX, alpha 1 COL3A1 0.072 collagen type III alpha 1 preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.