TDP1 11853

Name: TDP1	Sequence: fasta or formatted (608aa)		NCBI GI: 20127586
Description: tyrosyl-DNA phosphodiesterase 1		Referenced in: Replication Proteins
Other entries for this name: alt mRNA [608aa] tyrosyl-DNA phosphodiesterase 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 40 2 C cysteine 1.2 7 1 D aspartate 5.1 31 2 E glutamate 6.6 40 3 F phenylalanine 3.6 22 2 G glycine 6.4 39 2 H histidine 3.6 22 2 I isoleucine 4.1 25 1 K lysine 8.6 52 2 L leucine 8.7 53 3 M methionine 2.1 13 2 N asparagine 3.3 20 1 P proline 7.1 43 2 Q glutamine 4.1 25 1 R arginine 3.1 19 1 S serine 10.5 64 3 T threonine 4.4 27 1 V valine 4.3 26 2 W tryptophan 2.8 17 1 Y tyrosine 3.8 23 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tyrosyl-DNA phosphodiesterase 1 TDP1 1.000 tyrosyl-DNA phosphodiesterase 1 ATRX 0.013 transcriptional regulator ATRX isoform 2 ATRX 0.013 transcriptional regulator ATRX isoform 1 RP1L1 0.010 retinitis pigmentosa 1-like 1 DMP1 0.008 dentin matrix acidic phosphoprotein 1 isoform 1 precu... DMP1 0.008 dentin matrix acidic phosphoprotein 1 isoform 2 pre... BAZ2B 0.008 bromodomain adjacent to zinc finger domain, 2B [Homo... PRPF40A 0.006 formin binding protein 3 NKTR 0.006 natural killer-tumor recognition sequence SAMD1 0.006 sterile alpha motif domain containing 1 C12orf12 0.006 hypothetical protein LOC196477 APC 0.006 adenomatous polyposis coli APC 0.006 adenomatous polyposis coli APC 0.006 adenomatous polyposis coli ZFHX3 0.006 AT-binding transcription factor 1 HP1BP3 0.006 HP1-BP74 YTHDC1 0.006 splicing factor YT521-B isoform 2 YTHDC1 0.006 splicing factor YT521-B isoform 1 ITPR1 0.005 inositol 1,4,5-triphosphate receptor, type 1 isofor... ITPR1 0.005 inositol 1,4,5-triphosphate receptor, type 1 isofor... BCR 0.005 breakpoint cluster region isoform 2 BCR 0.005 breakpoint cluster region isoform 1 STIL 0.005 SCL/TAL1 interrupting locus isoform 1 STIL 0.005 SCL/TAL1 interrupting locus isoform 2 IWS1 0.005 IWS1 homolog LOC100288524 0.004 PREDICTED: hypothetical protein XP_002342748 SETD1A 0.004 SET domain containing 1A PTMA 0.004 prothymosin, alpha isoform 1 ARID1A 0.004 AT rich interactive domain 1A isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.