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Search of human proteins with 19923399
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
(482 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 991 0.0
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 991 0.0
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 908 0.0
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 578 e-165
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 578 e-165
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 68 2e-11
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 68 2e-11
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 65 2e-10
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 64 3e-10
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 64 3e-10
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 62 2e-09
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 62 2e-09
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 59 8e-09
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 59 8e-09
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 59 1e-08
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 59 1e-08
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 58 2e-08
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 58 2e-08
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 58 2e-08
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 58 2e-08
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 57 5e-08
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 56 6e-08
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 56 6e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 55 1e-07
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 55 2e-07
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 55 2e-07
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 55 2e-07
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 54 2e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 53 7e-07
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 52 1e-06
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 991 bits (2561), Expect = 0.0
Identities = 482/482 (100%), Positives = 482/482 (100%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
Query: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
Sbjct: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
Query: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
Sbjct: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
Sbjct: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
Query: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
Sbjct: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
Query: 481 RR 482
RR
Sbjct: 481 RR 482
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 991 bits (2561), Expect = 0.0
Identities = 482/482 (100%), Positives = 482/482 (100%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
Query: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
Sbjct: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
Query: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
Sbjct: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
Sbjct: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
Query: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
Sbjct: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
Query: 481 RR 482
RR
Sbjct: 481 RR 482
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 908 bits (2346), Expect = 0.0
Identities = 449/482 (93%), Positives = 449/482 (93%), Gaps = 33/482 (6%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
Query: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
PK PRVEAKPEVQSQPPRVREQRPRERP
Sbjct: 241 PK---------------------------------PRVEAKPEVQSQPPRVREQRPRERP 267
Query: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
Sbjct: 268 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 327
Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
Sbjct: 328 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 387
Query: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
Sbjct: 388 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 447
Query: 481 RR 482
RR
Sbjct: 448 RR 449
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 578 bits (1490), Expect = e-165
Identities = 315/482 (65%), Positives = 366/482 (75%), Gaps = 32/482 (6%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
NKFYVHND+FRY+DEVFG E EESE+EV EE EERQ +PE V +++ + +Y+
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
V+N +EE LEE EPEP+PE E + E + EEK LEE KS++P PA+
Sbjct: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238
Query: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPEVQSQPPR-V 291
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E+KPE Q P R
Sbjct: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298
Query: 292 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 349
R+QR RE R PP RGPRP R EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358
Query: 350 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 409
FF S+GNVVELRIN+ GGKLPNFGFVVFDDSEPVQ++L +PIMFRGEVRLNVEEKKT
Sbjct: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
Query: 410 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 469
RAARE DRRD R RGPGGPRG +GGGM RG PPRGGM QK G G G
Sbjct: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459
Query: 470 TG 471
G
Sbjct: 460 RG 461
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 578 bits (1490), Expect = e-165
Identities = 315/482 (65%), Positives = 366/482 (75%), Gaps = 32/482 (6%)
Query: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
NKFYVHND+FRY+DEVFG E EESE+EV EE EERQ +PE V +++ + +Y+
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178
Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
V+N +EE LEE EPEP+PE E + E + EEK LEE KS++P PA+
Sbjct: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238
Query: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPEVQSQPPR-V 291
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E+KPE Q P R
Sbjct: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298
Query: 292 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 349
R+QR RE R PP RGPRP R EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358
Query: 350 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 409
FF S+GNVVELRIN+ GGKLPNFGFVVFDDSEPVQ++L +PIMFRGEVRLNVEEKKT
Sbjct: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
Query: 410 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 469
RAARE DRRD R RGPGGPRG +GGGM RG PPRGGM QK G G G
Sbjct: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459
Query: 470 TG 471
G
Sbjct: 460 RG 461
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 67.8 bits (164), Expect = 2e-11
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 31/176 (17%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LFVG + D +E+ L+++F +G + + I T GK FGFV FDD +PV +I++
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 392 KPIMFRGEVRLNVEEKKTRAARE-------RETRGG----GDDR-----------RDIRR 429
K G N E +K + +E R RGG GD R + R
Sbjct: 173 KYHTINGH---NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRG 229
Query: 430 NDRGPGGPRGI------VGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTG 479
G G RG GGG G P GG G G G G G + G
Sbjct: 230 GSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LF+G L + E L+ ++ +G + + + + FGFV F V + A
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
+P G V E K ARE + G
Sbjct: 82 RPHSIDG----RVVEPKRAVAREESGKPG 106
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 67.8 bits (164), Expect = 2e-11
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 31/176 (17%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LFVG + D +E+ L+++F +G + + I T GK FGFV FDD +PV +I++
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 392 KPIMFRGEVRLNVEEKKTRAARE-------RETRGG----GDDR-----------RDIRR 429
K G N E +K + +E R RGG GD R + R
Sbjct: 161 KYHTINGH---NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRG 217
Query: 430 NDRGPGGPRGI------VGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTG 479
G G RG GGG G P GG G G G G G + G
Sbjct: 218 GSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 273
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LF+G L + E L+ ++ +G + + + + FGFV F V + A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
+P G V E K ARE + G
Sbjct: 70 RPHSIDG----RVVEPKRAVAREESGKPG 94
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 64.7 bits (156), Expect = 2e-10
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++FVG + D +E L+++F +G + + + GK F FV FDD + V +I++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRD- 450
K G N E KK + +E ++ G R N G GG G GG R +
Sbjct: 187 KYHTINGH---NCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNF 243
Query: 451 -GRGPPPRGGMAQKLGSGRGTGQMEG 475
GRG GG + G G G G
Sbjct: 244 GGRGGYGGGGGGSRGSYGGGDGGYNG 269
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 303 PPRGPRPGRGDMEQNDSDNRRIIRYPDS-HQLFVGNLPHDIDENELKEFFMSFGNVVELR 361
PP P+P G + + + P+ +LF+G L + ++ L+E F +G + +
Sbjct: 6 PPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV 65
Query: 362 INTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
+ + FGFV + E V + A+P G V E K +RE + G
Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDG----RVVEPKRAVSREDSVKPG 120
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 63.9 bits (154), Expect = 3e-10
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 314 MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGG 369
+E + +R + P +H ++FVG + D +E+ L+++F +G + + I T G
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143
Query: 370 KLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRR 429
K F FV FDD + V +I+I K +G N E +K A ++E +R RR
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVKGH---NCEVRK--ALPKQEMASASSSQRG-RR 197
Query: 430 NDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQMEG 475
GG RG GG D GRG RGG G G G +G
Sbjct: 198 GSGNFGGGRGDGFGG--NDNFGRGGNFSGRGGFGGSCGGGGYGGSGDG 243
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 63.9 bits (154), Expect = 3e-10
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 314 MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGG 369
+E + +R + P +H ++FVG + D +E+ L+++F +G + + I T G
Sbjct: 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143
Query: 370 KLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRR 429
K F FV FDD + V +I+I K +G N E +K A ++E +R RR
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVKGH---NCEVRK--ALPKQEMASASSSQRG-RR 197
Query: 430 NDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQMEG 475
GG RG GG D GRG RGG G G G +G
Sbjct: 198 GSGNFGGGRGDGFGG--NDNFGRGGNFSGRGGFGGSCGGGGYGGSGDG 243
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 61.6 bits (148), Expect = 2e-09
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 308 RPGRGD---MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVEL 360
RP + D +E + +R + P +H ++FVG + D +E+ L+++F +G + +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRG---EVR--LNVEEKKTRAARER 415
I T GK F FV FDD + V +I+I K G EVR L+ +E + ++ +R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 416 ETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQM 473
G G+ GG RG GG D GRG RGG G G G
Sbjct: 195 GRSGSGNF-----------GGGRG--GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241
Query: 474 EG 475
+G
Sbjct: 242 DG 243
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 61.6 bits (148), Expect = 2e-09
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 308 RPGRGD---MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVEL 360
RP + D +E + +R + P +H ++FVG + D +E+ L+++F +G + +
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRG---EVR--LNVEEKKTRAARER 415
I T GK F FV FDD + V +I+I K G EVR L+ +E + ++ +R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
Query: 416 ETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQM 473
G G+ GG RG GG D GRG RGG G G G
Sbjct: 195 GRSGSGNF-----------GGGRG--GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241
Query: 474 EG 475
+G
Sbjct: 242 DG 243
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 59.3 bits (142), Expect = 8e-09
Identities = 55/192 (28%), Positives = 77/192 (40%), Gaps = 43/192 (22%)
Query: 142 EPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPE 201
E E +EE E+E EEE+EE + E +E+ + E EE EE E E E E
Sbjct: 888 EEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEE 947
Query: 202 SETKTEELKPQVEEKNLEELE--------EKSTTPPPAEPVSL--PQEPPK--------- 242
E + EE E + +E+LE E+ PPP P +L P+ PPK
Sbjct: 948 EEDEEEE----EELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPPPESPPKVQPEPEPEP 1003
Query: 243 ----------------AFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQS 286
A + ++ + LP G V G P P Q VE +P S
Sbjct: 1004 GLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESP-AAGPPPQELVEEEP---S 1059
Query: 287 QPPRVREQRPRE 298
PP + E+ +
Sbjct: 1060 APPTLLEEETED 1071
Score = 42.4 bits (98), Expect = 0.001
Identities = 44/181 (24%), Positives = 61/181 (33%), Gaps = 35/181 (19%)
Query: 118 GSVPNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYE 177
G VP +VH Y+ E D E L+ +S+D V E P P P A
Sbjct: 758 GRVPRPAFVH-----YDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGAT----- 807
Query: 178 AHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLP 237
P P + T P V K EE EE P P P P
Sbjct: 808 --------------------PPPIAPTGPPTASPPVPAK--EEPEELPAAPGPLPPP--P 843
Query: 238 QEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPR 297
PP ++ L P GT G PP ++ ++ + + E + + E+
Sbjct: 844 PPPPPVPGPVTLPPPQLVPEGTPGGGG-PPALEEDLTVININSSDEEEEEEEEEEEEEEE 902
Query: 298 E 298
E
Sbjct: 903 E 903
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 134 EDEVFGDSEPELDEE---SEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLE 190
E+E D+ P L E S+ EVE E E P P QE E +EE E
Sbjct: 1015 EEERGADTAPTLAPEALPSQGEVEREGESPAAGPPP-QELVEE---EPSAPPTLLEEETE 1070
Query: 191 ESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPK 242
+ S + +P PE+ + EE++ + E + L+E E+ T A+ + P + K
Sbjct: 1071 DGSDKVQPPPETPAE-EEMETETEAEALQEKEQDDTAAMLADFIDCPPDDEK 1121
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 59.3 bits (142), Expect = 8e-09
Identities = 47/140 (33%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LFVG L D+ E +L E F FG V + I GK FGFV F + + + +
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158
Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDG 451
K +G VE KK + + GGG R+ RG G RG GG RD++G
Sbjct: 159 KFHPIQGH---RVEVKKAVPKEDIYSGGGGGG----SRSSRGGRGGRGRGGG---RDQNG 208
Query: 452 RGPPPRGGMAQKLGSGRGTG 471
GG G G G G
Sbjct: 209 LSKGGGGGYNSYGGYGGGGG 228
Score = 34.7 bits (78), Expect = 0.20
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LF+G L E+ L+ F +FG + + + + FGFV + + E + A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
P G N E K +RE R G
Sbjct: 68 SPHAVDG----NTVELKRAVSREDSARPG 92
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 58.9 bits (141), Expect = 1e-08
Identities = 78/338 (23%), Positives = 124/338 (36%), Gaps = 32/338 (9%)
Query: 134 EDEVFGDSEP---ELDEESEDEVEEEQEERQPSPEPVQENANSGYYE-AHPVTNGIEEPL 189
E+EV P E E+E E+E+EE Q E E A S E G E
Sbjct: 503 EEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKE 562
Query: 190 EESSHEPEPEPESETKTEELKPQ--VEEKNLE-------------ELEEKSTTPPPAEPV 234
E E E E E+E + E K + VEEK+ E E EK+ +P P PV
Sbjct: 563 EGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPV 622
Query: 235 SLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQ 294
+ P S K+ P V G P K+PV + + K V P + +
Sbjct: 623 EEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEE---KGKSPVSKSPVEEKAK 679
Query: 295 RPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQL-FVGNLPHDIDENELKEFFMS 353
P + + G EQ + + + + P ++ P D+ E + E +
Sbjct: 680 SPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVK 739
Query: 354 FGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAAR 413
V E+ TK V L ++ +P+Q+ + G +K + +R
Sbjct: 740 EEAVAEVVTITKSVKVHLEK---ETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSR 796
Query: 414 ER------ETRGGGDDRRDIRRNDRGPGGPRGIVGGGM 445
+ E G + ++ + G +G+V G+
Sbjct: 797 KEDIAVNGEVEGKEEVEQETKEKGSGREEEKGVVTNGL 834
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 58.9 bits (141), Expect = 1e-08
Identities = 78/338 (23%), Positives = 124/338 (36%), Gaps = 32/338 (9%)
Query: 134 EDEVFGDSEP---ELDEESEDEVEEEQEERQPSPEPVQENANSGYYE-AHPVTNGIEEPL 189
E+EV P E E+E E+E+EE Q E E A S E G E
Sbjct: 127 EEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKE 186
Query: 190 EESSHEPEPEPESETKTEELKPQ--VEEKNLE-------------ELEEKSTTPPPAEPV 234
E E E E E+E + E K + VEEK+ E E EK+ +P P PV
Sbjct: 187 EGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPV 246
Query: 235 SLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQ 294
+ P S K+ P V G P K+PV + + K V P + +
Sbjct: 247 EEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEE---KGKSPVSKSPVEEKAK 303
Query: 295 RPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQL-FVGNLPHDIDENELKEFFMS 353
P + + G EQ + + + + P ++ P D+ E + E +
Sbjct: 304 SPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVK 363
Query: 354 FGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAAR 413
V E+ TK V L ++ +P+Q+ + G +K + +R
Sbjct: 364 EEAVAEVVTITKSVKVHLEK---ETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSR 420
Query: 414 ER------ETRGGGDDRRDIRRNDRGPGGPRGIVGGGM 445
+ E G + ++ + G +G+V G+
Sbjct: 421 KEDIAVNGEVEGKEEVEQETKEKGSGREEEKGVVTNGL 458
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 329 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
D ++F+G L D + +LK++F FG VV+ + + G+ FGFV+F +SE V ++
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 389 LIAKPIMFRGEVRLNVEEKKTRAARERE 416
+ K G+V ++ K+ +A + +E
Sbjct: 136 MDQKEHKLNGKV---IDPKRAKAMKTKE 160
Score = 46.2 bits (108), Expect = 7e-05
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++FVG L D E +++E+F FG V + + K F F+ F + EPV++I+
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
Query: 392 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGG 436
K + + E+++ + +++ + ++ +RGG R RG GG
Sbjct: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRA------RGRGG 265
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 329 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
D ++F+G L D + +LK++F FG VV+ + + G+ FGFV+F +SE V ++
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 389 LIAKPIMFRGEVRLNVEEKKTRAARERE 416
+ K G+V ++ K+ +A + +E
Sbjct: 136 MDQKEHKLNGKV---IDPKRAKAMKTKE 160
Score = 47.4 bits (111), Expect = 3e-05
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++FVG L D E +++E+F FG V + + K F F+ F + EPV++I+
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
Query: 392 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPG 435
K + + E+++ + +++ + ++ +RGG R R D+ G
Sbjct: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSG 270
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 303 PPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRI 362
PP G + G + N S N D+ ++FVG L D + +LK++F FG VV+ I
Sbjct: 47 PPSGNQNGAEGDQINASKNEE-----DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 363 NTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARE 414
G+ FGF++F D+ V+++L K G V ++ KK A ++
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV---IDPKKAMAMKK 150
Score = 49.3 bits (116), Expect = 8e-06
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++FVG L + E +++E+F FG + + + K F F+ F + EPV+++L
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 392 KPIMFRG-EVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRD 450
K G + + V + K +++ GG +R R +RG GG G GGG
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNR---NRGNRGSGGGGG--GGGQGSTNY 269
Query: 451 GRGPPPRGG 459
G+ RGG
Sbjct: 270 GKS-QRRGG 277
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 303 PPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRI 362
PP G + G + N S N D+ ++FVG L D + +LK++F FG VV+ I
Sbjct: 47 PPSGNQNGAEGDQINASKNEE-----DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101
Query: 363 NTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARE 414
G+ FGF++F D+ V+++L K G V ++ KK A ++
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV---IDPKKAMAMKK 150
Score = 51.6 bits (122), Expect = 2e-06
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++FVG L + E +++E+F FG + + + K F F+ F + EPV+++L
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 392 KPIMFRG-EVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRD-R 449
K G + + V + K +++ GG +R R +RG GG G GGG +
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNR---NRGNRGSGGGGG--GGGQSQSWN 269
Query: 450 DGRGPPPRGGMAQKLGSGRGTG 471
G G G + G G G G
Sbjct: 270 QGYGNYWNQGYGYQQGYGPGYG 291
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 56.6 bits (135), Expect = 5e-08
Identities = 71/253 (28%), Positives = 99/253 (39%), Gaps = 39/253 (15%)
Query: 74 HTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRY 133
H +R+ + A +G V Q L +G A E VH+D +
Sbjct: 295 HQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDV--EIEEAGEEEEKEIAIVHSDAEKE 352
Query: 134 EDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPV-------TNGIE 186
++E E E+ E E EV E ++++ PE V + H + TN +E
Sbjct: 353 QEEEEQKQEMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVENVKHVIADQEVMETNRVE 412
Query: 187 --EPLE-ESSHEPEPEPESETKTEE----LKPQVE-------EKNLEELEEKSTTPPPAE 232
EP E E+S E EPE E E + ++ L P E EK EE EEK + P P E
Sbjct: 413 SVEPSENEASKELEPEMEFEIEPDKECKSLSPGKENVSALDMEKESEEKEEKESEPQP-E 471
Query: 233 PVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVR 292
PV+ PQ + P + S P P SQP + +Q P +
Sbjct: 472 PVAQPQPQSQ-------------PQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVTQ 518
Query: 293 EQRP--RERPGFP 303
EQ ER FP
Sbjct: 519 EQGHLLPERKDFP 531
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 56.2 bits (134), Expect = 6e-08
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++F+G L D + +LK++F FG VV+ + + G+ FGFV+F +SE V +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 392 KPIMFRGEVRLNVEEKKTRAARERE 416
K G+V ++ K+ +A + +E
Sbjct: 158 KEHKLNGKV---IDPKRAKAMKTKE 179
Score = 46.2 bits (108), Expect = 7e-05
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++FVG L D E +++E+F FG V + + K F F+ F + EPV++I+
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 392 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGG 436
K + + E+++ + +++ + ++ +RGG R RG GG
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRA------RGRGG 284
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 56.2 bits (134), Expect = 6e-08
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++F+G L D + +LK++F FG VV+ + + G+ FGFV+F +SE V +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 392 KPIMFRGEVRLNVEEKKTRAARERE 416
K G+V ++ K+ +A + +E
Sbjct: 158 KEHKLNGKV---IDPKRAKAMKTKE 179
Score = 47.4 bits (111), Expect = 3e-05
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
++FVG L D E +++E+F FG V + + K F F+ F + EPV++I+
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 392 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPG 435
K + + E+++ + +++ + ++ +RGG R R D+ G
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSG 289
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 55.1 bits (131), Expect = 1e-07
Identities = 57/172 (33%), Positives = 73/172 (42%), Gaps = 30/172 (17%)
Query: 226 TTPPPAEPVSLPQEPPKAFSWASVTSKNLP----PSGTVSSSGIPPHVKAPVSQPRVEAK 281
TTPP A P PP A K P P G G P +S P K
Sbjct: 176 TTPPQAGG---PPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPK 232
Query: 282 PEVQS--QPPRVREQRP----RERPGFPPRGPRPGRGDMEQNDSD----NRRIIRYPDSH 331
P + +P R+ P + G PP GP GR + + +DS+ N ++R P
Sbjct: 233 PPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPG-GRSEEKISDSEGFKANLSLLRRPGEK 291
Query: 332 ------QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFV 377
+LFVGNLP DI E+E K F +G E+ IN KG G FGF+
Sbjct: 292 TYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFIN-KGKG-----FGFI 337
Score = 33.1 bits (74), Expect = 0.58
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 90 VVVQVMGLLSNS-GQPERKFMQTFVLAPEGSVPNKFYVHNDMFRYEDEVFGDSEPELDEE 148
V+V+ + L + G PE+ + + E P +F H F YE S E++++
Sbjct: 445 VIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGT-FEYEYSQRWKSLDEMEKQ 503
Query: 149 SEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEE 208
++VE+ ++ + E E+A ++A+ + + EE E + K +E
Sbjct: 504 QREQVEKNMKDAKDKLESEMEDAYH-EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKE 562
Query: 209 LKPQVEEKNLEELEE 223
++ + EE+ EE
Sbjct: 563 MQLRQEEERRRREEE 577
Score = 30.8 bits (68), Expect = 2.9
Identities = 36/152 (23%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 163 SPEP-VQENANSGYYEAHPVTNGIEEPLEESS-HEPEPEPESETKTEELKPQVEEKNLEE 220
SP P + N N G P +G + P+ H+ + +P + + P + +
Sbjct: 33 SPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQ 92
Query: 221 LEEKSTTPPPAEPVSLP---QEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPR 277
++ PPP + S P Q P A S PP+ SS PP P
Sbjct: 93 PHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSA-----PPA----SSSAPPATPPTSGAPP 143
Query: 278 VEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 309
+ PP V P P PP P
Sbjct: 144 GSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVP 175
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 54.7 bits (130), Expect = 2e-07
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 293 EQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFM 352
+ +P G P RP G + SDN + S+++FVG +PH+ E EL+E+F
Sbjct: 81 DPKPCTPRGMQPERTRPKEGWQKGPRSDNSK------SNKIFVGGIPHNCGETELREYFK 134
Query: 353 SFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQR 387
FG V E+ + + FGF+ F+D + V +
Sbjct: 135 KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 38.5 bits (88), Expect = 0.014
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LFVG L + L+ +F +G VV+ I + FGFV F D V +L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 392 KPIMFRGEVRLNVEEK 407
+P G N++ K
Sbjct: 71 RPHTLDGR---NIDPK 83
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 54.7 bits (130), Expect = 2e-07
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 293 EQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFM 352
+ +P G P RP G + SDN + S+++FVG +PH+ E EL+E+F
Sbjct: 81 DPKPCTPRGMQPERTRPKEGWQKGPRSDNSK------SNKIFVGGIPHNCGETELREYFK 134
Query: 353 SFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQR 387
FG V E+ + + FGF+ F+D + V +
Sbjct: 135 KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Score = 38.5 bits (88), Expect = 0.014
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LFVG L + L+ +F +G VV+ I + FGFV F D V +L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 392 KPIMFRGEVRLNVEEK 407
+P G N++ K
Sbjct: 71 RPHTLDGR---NIDPK 83
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 54.7 bits (130), Expect = 2e-07
Identities = 53/167 (31%), Positives = 67/167 (40%), Gaps = 12/167 (7%)
Query: 142 EPELDEESED-EVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEP 200
EP+L SE + EE SP P + + + E H E L EP P
Sbjct: 731 EPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCAVPEEPHLSP 790
Query: 201 ESETKTEELKPQVEEKNLE-ELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGT 259
++E L PQ EE +L + EE +P P EP PQ S S S+ S
Sbjct: 791 QAEGP--HLSPQPEELHLSPQTEEPHLSPVPEEPCLSPQPEE---SHLSPQSEEPCLSPR 845
Query: 260 VSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPPRG 306
S + P ++ P PR E PE Q P P E P FPP G
Sbjct: 846 PEESHLSPELEKPPLSPRPEKPPEEPGQCP-----APEELPLFPPPG 887
Score = 48.9 bits (115), Expect = 1e-05
Identities = 56/179 (31%), Positives = 71/179 (39%), Gaps = 23/179 (12%)
Query: 147 EESEDEVEEEQEERQPSPE------PVQENANSGYYEAHPVTNGIEE-----PLEESSHE 195
EES E+ P PE P +E S EA ++ +EE P EES
Sbjct: 445 EESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPPPEESPLS 504
Query: 196 PEPE--PESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKN 253
P PE P S + L P E LE + PP A P+S PP S S +
Sbjct: 505 PPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLS----PPFEESPLSPPPEE 560
Query: 254 LPPSGTVSSSGI-PPHVKAPVSQPRVEAKPEVQSQPPRVREQRP--RERPGFPPRGPRP 309
LP S +S + PP ++P+S P E+ S PP P E P PP P
Sbjct: 561 LPTSPPPEASRLSPPPEESPMSPPPEESP---MSPPPEASRLFPPFEESPLSPPPEESP 616
Score = 43.5 bits (101), Expect = 4e-04
Identities = 44/166 (26%), Positives = 59/166 (35%), Gaps = 13/166 (7%)
Query: 156 EQEERQPSPE--PVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETK---TEELK 210
E+ P PE P+ + P + + P EES P PE + L
Sbjct: 604 EESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLS 663
Query: 211 PQVEEKNLEELEEKSTTPPPAE-------PVSLPQEPPKAFSWASVTSKNLPPSGTVSSS 263
P EE L E+S T PP E P P PP S AS ++ S + S
Sbjct: 664 PPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEES 723
Query: 264 GIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 309
+ P + P PR E P + +P E P P+ P
Sbjct: 724 PLLPLPEEPQLCPRSEG-PHLSPRPEEPHLSPRPEEPHLSPQAEEP 768
Score = 43.5 bits (101), Expect = 4e-04
Identities = 43/156 (27%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 156 EQEERQPSPE--PVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQV 213
E P PE P+ PV + + P EES P PE ES T P
Sbjct: 631 EDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPE-ESPT-----SPPP 684
Query: 214 EEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPV 273
E L E S T PP P P PP S S+ + P + P + P
Sbjct: 685 EASRLSPPPEDSPTSPP--PEDSPASPPPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPH 742
Query: 274 SQPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 309
PR E +P + +P E P P+ P
Sbjct: 743 LSPRPE-EPHLSPRPEEPHLSPQAEEPHLSPQPEEP 777
Score = 38.9 bits (89), Expect = 0.010
Identities = 48/171 (28%), Positives = 61/171 (35%), Gaps = 35/171 (20%)
Query: 158 EERQPSPE-------PVQENANSGYYEAHPVTNGIEE-----PLEESSHEPEPEPESETK 205
EE PSP P + + S +E P++ EE P E S P PE +
Sbjct: 524 EESPPSPALETPLSPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPMSP 583
Query: 206 TEELKPQVEEKNLEEL----EEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVS 261
E P L EE +PPP E P PP S S ++ P S
Sbjct: 584 PPEESPMSPPPEASRLFPPFEESPLSPPPEES---PLSPPPEASRLSPPPEDSPMS---- 636
Query: 262 SSGIPPHVKAPVSQP----RVEAKPEVQSQPPRVREQ----RPRERPGFPP 304
PP ++P+S P R+ P V P E P E P PP
Sbjct: 637 ----PPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPP 683
Score = 38.9 bits (89), Expect = 0.010
Identities = 49/199 (24%), Positives = 72/199 (36%), Gaps = 29/199 (14%)
Query: 147 EESEDEVEEEQEERQPSPE------PVQENANSGYYEAHPVTNGIEE-----PLEESSHE 195
EES E+ P PE P +++ S E P + E+ PLEES
Sbjct: 667 EESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLL 726
Query: 196 PEPE-PESETKTE--ELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSK 252
P PE P+ ++E L P+ EE +L E+ P AE L +P + A
Sbjct: 727 PLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCA----- 781
Query: 253 NLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGRG 312
+P PH+ P + +PE P+ E P P P+P
Sbjct: 782 -VPEE---------PHLSPQAEGPHLSPQPEELHLSPQTEEPHLSPVPEEPCLSPQPEES 831
Query: 313 DMEQNDSDNRRIIRYPDSH 331
+ + R +SH
Sbjct: 832 HLSPQSEEPCLSPRPEESH 850
Score = 35.8 bits (81), Expect = 0.089
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 187 EPLEESSHEPEPEPESETKTE-ELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFS 245
+PL ++ + EP+ E+ E L P EE L E+S T PP E L PP
Sbjct: 417 KPLGKAGVQLEPQLEAPLNEEMPLLPPPEESPLSPPPEESPTSPPPEASRL--SPPPEEL 474
Query: 246 WASVTSKNLPPSGTVSSSGI-PPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPP 304
AS + L S + S + PP ++P+S P PE S P E+ P P P
Sbjct: 475 PASPLPEALHLSRPLEESPLSPPPEESPLSPP-----PE--SSPFSPLEESPLSPPEESP 527
Query: 305 RGP 307
P
Sbjct: 528 PSP 530
Score = 32.0 bits (71), Expect = 1.3
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 13/175 (7%)
Query: 142 EPELDEESEDE-VEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEP 200
EP L E+ + + EE SP+ + + E+H + PL +P EP
Sbjct: 812 EPHLSPVPEEPCLSPQPEESHLSPQSEEPCLSPRPEESHLSPELEKPPLSPRPEKPPEEP 871
Query: 201 ESETKTEELK--PQVEEKNLEELEEKSTTPPPAEP--VSLPQEPPKAFSWASVTSKNL-- 254
EEL P E +L L + P EP LP+E P + S S L
Sbjct: 872 GQCPAPEELPLFPPPGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMP 931
Query: 255 -----PPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPP 304
PP + ++ PP + +P+ + + S P E P PP
Sbjct: 932 PDPLPPPLSPIITAAAPPAL-SPLGELEYPFGAKGDSDPESPLAAPILETPISPP 985
Score = 32.0 bits (71), Expect = 1.3
Identities = 44/178 (24%), Positives = 60/178 (33%), Gaps = 35/178 (19%)
Query: 142 EPELDEESEDE-VEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEP 200
EP L + E+ + + EE SP P +E+ S E P++ E+P EE P PE
Sbjct: 821 EPCLSPQPEESHLSPQSEEPCLSPRP-EESHLSPELEKPPLSPRPEKPPEEPGQCPAPEE 879
Query: 201 E--------------------SETKTEELKPQVEEKNLEELEEKSTTP---------PPA 231
SE L P EE L E S +P PP
Sbjct: 880 LPLFPPPGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPPL 939
Query: 232 EPVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPP 289
P+ PP S + P G S + AP+ + + PE P
Sbjct: 940 SPIITAAAPPA----LSPLGELEYPFGAKGDSDPESPLAAPILETPISPPPEANCTDP 993
Score = 29.3 bits (64), Expect = 8.3
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 6/118 (5%)
Query: 196 PEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLP 255
P+ S + ++L+ + ++ L++ + TPP EP P + P
Sbjct: 4209 PQLRHLSPQQQQQLQALLMQRQLQQSQAVRQTPPYQEP-GTQTSPLQGLLGCQPQLGGFP 4267
Query: 256 --PSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGR 311
+G + G P + P PR+ A P S P + P P P RP +
Sbjct: 4268 GPQTGPLQELGAGPRPQGP---PRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQ 4322
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 329 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
D ++F+G L D + +L E+ FG VV+ I T V G+ FGFV+F D+ V ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Query: 389 LIAKPIMFRGEVRLNVEEKKTRAARERE 416
L K G++ ++ K+ +A + +E
Sbjct: 206 LELKEHKLDGKL---IDPKRAKALKGKE 230
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 36/144 (25%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNV--VELRINTKGVGGKLPNFGFVVFDDSEPVQRIL 389
++FVG L D E ++KE+F +FG + +EL ++TK + F F+ + D EPV+++L
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTK--TNERRGFCFITYTDEEPVKKLL 291
Query: 390 IAKPIMF-RGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRD 448
++ G+ + V + K ++++ + GG RG GG
Sbjct: 292 ESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGG----------------RGAAAGG---- 331
Query: 449 RDGRGPPPRGGMAQKLGSGRGTGQ 472
RGG G GRG GQ
Sbjct: 332 --------RGGTR---GRGRGQGQ 344
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 52.8 bits (125), Expect = 7e-07
Identities = 57/202 (28%), Positives = 82/202 (40%), Gaps = 18/202 (8%)
Query: 140 DSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEES------S 193
D + + ++ E E E+ ER SP + + S + PV + S S
Sbjct: 148 DEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKS 207
Query: 194 HEPEPEPESETKTEEL-KPQVEEKNLEELEEKSTTP----PPAEPVSLPQE--PPKAFSW 246
P P PE + KT EL +P V+ K E ST+ P EP+ P+E P K
Sbjct: 208 RSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKK 267
Query: 247 ASVTSKNLPPSGTVSSSGIPPHVKAPV-SQPRVEAKPEVQSQPPRVR---EQRPRERPGF 302
K P S + S S ++P ++PR + +S PR R +RP R
Sbjct: 268 EKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRT 327
Query: 303 PPRG-PRPGRGDMEQNDSDNRR 323
PPR P P R ++ RR
Sbjct: 328 PPRRMPPPPRHRRSRSPVRRRR 349
Score = 38.1 bits (87), Expect = 0.018
Identities = 39/172 (22%), Positives = 60/172 (34%), Gaps = 6/172 (3%)
Query: 143 PELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPES 202
P S + R P+P P + + P P++ + P P P+
Sbjct: 554 PTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR-YSPSPPPKR 612
Query: 203 ETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVSS 262
T + P+ + + + PP + S P ++ S +S K PS +
Sbjct: 613 RTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTRE 672
Query: 263 SGIPPHVKAPVSQPRVEAKPEVQSQPPRVR---EQRPRERPGFPPRGPRPGR 311
+ P K PR A P+ S PP VR P+ R P RP R
Sbjct: 673 ARSPQPNKRHSPSPRPRA-PQTSSSPPPVRRGASSSPQRRQS-PSPSTRPIR 722
Score = 33.1 bits (74), Expect = 0.58
Identities = 47/222 (21%), Positives = 72/222 (32%), Gaps = 48/222 (21%)
Query: 149 SEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEP-EPEPESETKTE 207
S E++E+ PEP + EA ++ ++ P E EP EP PE +K E
Sbjct: 209 SPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKE 268
Query: 208 ELKPQVEEKNLEELEEKSTT---------------------------------------- 227
+ K + ++ + +S T
Sbjct: 269 KEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTP 328
Query: 228 -----PPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKP 282
PPP S + S AS++ + S + S S K S PR +
Sbjct: 329 PRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388
Query: 283 EVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRI 324
+ PPR R RP P PP R + N + R+
Sbjct: 389 SPSASPPR-RRHRP-SPPATPPPKTRHSPTPQQSNRTRKSRV 428
Score = 33.1 bits (74), Expect = 0.58
Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 12/153 (7%)
Query: 157 QEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEK 216
Q PSP P + A+ + P SH P P+ S T+ P + K
Sbjct: 601 QRRYSPSPPPKRRTASPPPPPKRRASPS-PPPKRRVSHSPPPKQRSSPVTKRRSPSLSSK 659
Query: 217 NLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQP 276
+ K ++P + + +P K S + P +SS PP + S P
Sbjct: 660 H-----RKGSSPSRSTREARSPQPNKRHS------PSPRPRAPQTSSSPPPVRRGASSSP 708
Query: 277 RVEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 309
+ P ++P R + P + P P
Sbjct: 709 QRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 741
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 52.0 bits (123), Expect = 1e-06
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 320 DNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 379
D++R Y ++FVG + D +E+ L++++ +G + I T GK +F FV F
Sbjct: 94 DSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTF 153
Query: 380 DDSEPVQRILIAKPIMFRG---EVRLNVEEKKTRAA--RERETRGGGDDRRDIRRNDRGP 434
D+ + +I+I K + G EVR + ++K +A +R G G+
Sbjct: 154 DNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNF----------- 202
Query: 435 GGPRGIVGGGMMRDRDGRG 453
GG RG GG D G G
Sbjct: 203 GGGRG--GGFSGNDNFGHG 219
Score = 33.9 bits (76), Expect = 0.34
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
+LF+G L + + L+ +G + E + + FGFV + E V + A
Sbjct: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74
Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
+P G V E KT +RE R G
Sbjct: 75 RPHKMGG----RVVEPKTAVSREDSQRPG 99
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,926,229
Number of Sequences: 37866
Number of extensions: 1611320
Number of successful extensions: 19894
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 1204
Number of HSP's that attempted gapping in prelim test: 10818
Number of HSP's gapped (non-prelim): 6329
length of query: 482
length of database: 18,247,518
effective HSP length: 106
effective length of query: 376
effective length of database: 14,233,722
effective search space: 5351879472
effective search space used: 5351879472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.