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Search of human proteins with 19923281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923281 chondroitin 6-sulfotransferase 3 [Homo sapiens]
(479 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923281 chondroitin 6-sulfotransferase 3 [Homo sapiens] 957 0.0
gi|4502841 carbohydrate (keratan sulfate Gal-6) sulfotransferase... 303 2e-82
gi|21362052 carbohydrate (N-acetylglucosamine 6-O) sulfotransfer... 221 1e-57
gi|11055976 carbohydrate (N-acetylglucosamine 6-O) sulfotransfer... 218 1e-56
gi|5031735 carbohydrate (N-acetylglucosamine 6-O) sulfotransfera... 185 9e-47
gi|23238228 chondroitin 6-sulfotransferase 7 [Homo sapiens] 162 6e-40
gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransfer... 162 8e-40
gi|23943787 dermatan sulfate epimerase-like [Homo sapiens] 35 0.20
gi|4507677 heat shock protein 90kDa beta, member 1 [Homo sapiens] 32 0.97
gi|66472920 DNAJ domain-containing [Homo sapiens] 32 0.97
gi|87299628 biorientation of chromosomes in cell division 1-like... 32 1.7
gi|110611218 ribosome binding protein 1 [Homo sapiens] 31 2.2
gi|110611220 ribosome binding protein 1 [Homo sapiens] 31 2.2
gi|33356148 formin-like 1 [Homo sapiens] 31 2.8
gi|21735548 centrosomal protein 2 [Homo sapiens] 30 3.7
gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo sap... 30 3.7
gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo sap... 30 3.7
gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo sap... 30 3.7
gi|5292161 proteasome 26S non-ATPase subunit 4 [Homo sapiens] 30 3.7
gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E [Ho... 30 3.7
gi|51093861 caspase recruitment domain protein 10 [Homo sapiens] 30 4.8
gi|166197690 neuronal guanine nucleotide exchange factor isoform... 30 4.8
gi|166197688 neuronal guanine nucleotide exchange factor isoform... 30 4.8
gi|148806872 lupus brain antigen 1 [Homo sapiens] 30 4.8
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 30 6.3
gi|168823443 RAD54-like 2 [Homo sapiens] 30 6.3
gi|62414289 vimentin [Homo sapiens] 29 8.3
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 29 8.3
gi|237512980 voltage-gated sodium channel type V alpha isoform e... 29 8.3
gi|37622907 voltage-gated sodium channel type V alpha isoform a ... 29 8.3
>gi|19923281 chondroitin 6-sulfotransferase 3 [Homo sapiens]
Length = 479
Score = 957 bits (2475), Expect = 0.0
Identities = 479/479 (100%), Positives = 479/479 (100%)
Query: 1 MEKGLTLPQDCRDFVHSLKMRSKYALFLVFVVIVFVFIEKENKIISRVSDKLKQIPQALA 60
MEKGLTLPQDCRDFVHSLKMRSKYALFLVFVVIVFVFIEKENKIISRVSDKLKQIPQALA
Sbjct: 1 MEKGLTLPQDCRDFVHSLKMRSKYALFLVFVVIVFVFIEKENKIISRVSDKLKQIPQALA 60
Query: 61 DANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKE 120
DANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKE
Sbjct: 61 DANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKE 120
Query: 121 EEPPRPAVAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGAN 180
EEPPRPAVAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGAN
Sbjct: 121 EEPPRPAVAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGAN 180
Query: 181 AAGSALVYRDVLKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCEDPVCTPFVKK 240
AAGSALVYRDVLKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCEDPVCTPFVKK
Sbjct: 181 AAGSALVYRDVLKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCEDPVCTPFVKK 240
Query: 241 VFEKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLV 300
VFEKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLV
Sbjct: 241 VFEKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLV 300
Query: 301 RDPRAVLASRMVAFAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCESIRLSAELGLRQPA 360
RDPRAVLASRMVAFAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCESIRLSAELGLRQPA
Sbjct: 301 RDPRAVLASRMVAFAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCESIRLSAELGLRQPA 360
Query: 361 WLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDGSGIYSTQKN 420
WLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDGSGIYSTQKN
Sbjct: 361 WLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDGSGIYSTQKN 420
Query: 421 SSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVSLLEERGTFWVT 479
SSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVSLLEERGTFWVT
Sbjct: 421 SSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVSLLEERGTFWVT 479
>gi|4502841 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
[Homo sapiens]
Length = 411
Score = 303 bits (776), Expect = 2e-82
Identities = 165/365 (45%), Positives = 224/365 (61%), Gaps = 10/365 (2%)
Query: 116 EQRKEEEPPRPAVAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTV--S 173
E+ EE P + H+L++ATTR+GSSFVG+ FNQ ++FYLFEPL+H++ T+
Sbjct: 44 ERLCEESPTFAYNLSRKTHILILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPR 103
Query: 174 FEPGGANAAGSALV--YRDVLKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCED 231
F G + A ++ RD+L+ L+ CDLY LE++I P P +H T +FRRG+SR LC
Sbjct: 104 FTQGKSPADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPVNHTTDRIFRRGASRVLCSR 163
Query: 232 PVCTPF--VKKVFEKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAED 289
PVC P V E+ C R+CG LN+T+AAEACR + H+A+K VR+ ++ L+ L ED
Sbjct: 164 PVCDPPGPADLVLEEGDCV-RKCGLLNLTVAAEACRERSHVAIKTVRVPEVNDLRALVED 222
Query: 290 PRLDLRVIQLVRDPRAVLASRMVAFAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCESIR 349
PRL+L+VIQLVRDPR +LASR F Y+ W+ W + +V +L CE
Sbjct: 223 PRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKP--YNLDVTQLTTVCEDFS 280
Query: 350 LSAELGLRQPAWLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAH 409
S GL +P WL+G+YMLVRYED+AR P++K E+Y F GIPL V WIQ NT+
Sbjct: 281 NSVSTGLMRPPWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQNNTRGDP 340
Query: 410 D-GSGIYSTQKNSSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVS 468
G Y T +NS+ EKWRF + + + Q AC + GYK+A L N SVS
Sbjct: 341 TLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGYKIAASEEELKNPSVS 400
Query: 469 LLEER 473
L+EER
Sbjct: 401 LVEER 405
>gi|21362052 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase
5 [Homo sapiens]
Length = 411
Score = 221 bits (562), Expect = 1e-57
Identities = 128/356 (35%), Positives = 194/356 (54%), Gaps = 11/356 (3%)
Query: 123 PPRPAVAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGANAA 182
P PA R HVL++++ R+GSSF+G+ F+Q ++FYL EP WH+ T+S +AA
Sbjct: 53 PSSPAGGEDRVHVLVLSSWRSGSSFLGQLFSQHPDVFYLMEPAWHVWTTLS----QGSAA 108
Query: 183 GSALVYRDVLKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCEDPVCTPFVKKVF 242
+ RD+++ +FLCD+ V + + +P+ F +SR+LC P C+ F +
Sbjct: 109 TLHMAVRDLMRSIFLCDMDVFDAY---MPQSRNLSAFFNWATSRALCSPPACSAFPRGTI 165
Query: 243 EKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLVRD 302
K C +LA EACR H+ LK VR L+ L PL DP L+LR++ LVRD
Sbjct: 166 SKQDVCKTLCTRQPFSLAREACRSYSHVVLKEVRFFNLQVLYPLLSDPALNLRIVHLVRD 225
Query: 303 PRAVLASRMVAFAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCES-IRLSAELGLRQPAW 361
PRAVL SR A + L G+ + ++ +R C S +R++ L+ P +
Sbjct: 226 PRAVLRSREAAGPILARDNGIVLGTNGKWVEADPHLRLIREVCRSHVRIAEAATLKPPPF 285
Query: 362 LRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDGSGI---YSTQ 418
LRGRY LVR+ED+AR PL + R +Y F G+ LTPQ+E WI T + G I +++
Sbjct: 286 LRGRYRLVRFEDLAREPLAEIRALYAFTGLTLTPQLEAWIHNITHGSGIGKPIEAFHTSS 345
Query: 419 KNSSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVSLLEERG 474
+N+ + WR ++PF VQ C A++L GY+ A + ++ L+ RG
Sbjct: 346 RNARNVSQAWRHALPFTKILRVQEVCAGALQLLGYRPVYSADQQRDLTLDLVLPRG 401
>gi|11055976 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase
6 [Homo sapiens]
Length = 395
Score = 218 bits (555), Expect = 1e-56
Identities = 134/366 (36%), Positives = 192/366 (52%), Gaps = 31/366 (8%)
Query: 123 PPRPAVAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGANAA 182
P PA R HVL++++ R+GSSFVG+ FNQ ++FYL EP WH+ T+S +AA
Sbjct: 31 PSSPAGGEARVHVLVLSSWRSGSSFVGQLFNQHPDVFYLMEPAWHVWTTLS----QGSAA 86
Query: 183 GSALVYRDVLKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCEDPVCTPFVKKVF 242
+ RD+++ +FLCD+ V + + LP +F+ SR+LC P C+ F +
Sbjct: 87 TLHMAVRDLVRSVFLCDMDVFDAY---LPWRRNLSDLFQWAVSRALCSPPACSAFPRGAI 143
Query: 243 EKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLVRD 302
C + TLA EACR H+ LK VR L+ L PL DP L+LR++ LVRD
Sbjct: 144 SSEAVCKPLCARQSFTLAREACRSYSHVVLKEVRFFNLQVLYPLLSDPALNLRIVHLVRD 203
Query: 303 PRAVLASRMVA----------FAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCES-IRLS 351
PRAVL SR G TW E GLR +R C S +R++
Sbjct: 204 PRAVLRSREQTAKALARDNGIVLGTNGTWV-----EADPGLRV-----VREVCRSHVRIA 253
Query: 352 AELGLRQPAWLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDG 411
L+ P +LRGRY LVR+ED+AR PL + R +Y F G+ LTPQ+E WI T + G
Sbjct: 254 EAATLKPPPFLRGRYRLVRFEDLAREPLAEIRALYAFTGLSLTPQLEAWIHNITHGSGPG 313
Query: 412 S---GIYSTQKNSSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVS 468
+ ++ +N+ + WR ++PF + VQ C A++L GY+ N ++
Sbjct: 314 ARREAFKTSSRNALNVSQAWRHALPFAKIRRVQELCAGALQLLGYRPVYSEDEQRNLALD 373
Query: 469 LLEERG 474
L+ RG
Sbjct: 374 LVLPRG 379
>gi|5031735 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase
4 [Homo sapiens]
Length = 386
Score = 185 bits (469), Expect = 9e-47
Identities = 111/343 (32%), Positives = 180/343 (52%), Gaps = 12/343 (3%)
Query: 132 RRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGANAAGSALVYRDV 191
R HVL++++ R+GSSFVG+ F Q ++FYL EP WH+ T + A + RD+
Sbjct: 42 RMHVLVLSSWRSGSSFVGQLFGQHPDVFYLMEPAWHVWMTFK----QSTAWMLHMAVRDL 97
Query: 192 LKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCEDPVCTPFVK-KVFEKYHCKNR 250
++ +FLCD+ V + ++ P P + F + +SR+LC P C + ++ + HC+
Sbjct: 98 IRAVFLCDMSVFDAYMEPGPRRQSSLFQWE--NSRALCSAPACDIIPQDEIIPRAHCR-L 154
Query: 251 RCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLVRDPRAVLASR 310
C + +ACR H+ LK VR L+ L PL +DP L+L ++ LVRDPRAV SR
Sbjct: 155 LCSQQPFEVVEKACRSYSHVVLKEVRFFNLQSLYPLLKDPSLNLHIVHLVRDPRAVFRSR 214
Query: 311 MVAFAGKYKTWKKWLDDEGQDGLREEE--VQRLRGNCESIRLSAELGLRQPAWLRGRYML 368
G + + + + L++E+ ++ C+S + P L+ RY+L
Sbjct: 215 -ERTKGDLMIDSRIVMGQHEQKLKKEDQPYYVMQVICQSQLEIYKTIQSLPKALQERYLL 273
Query: 369 VRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDGSGIYSTQ-KNSSEQFEK 427
VRYED+AR P+ + MY F G+ P ++ W+ T+ G + T +++ +
Sbjct: 274 VRYEDLARAPVAQTSRMYEFVGLEFLPHLQTWVHNITRGKGMGDHAFHTNARDALNVSQA 333
Query: 428 WRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVSLL 470
WR+S+P++ +Q ACG AM L GY+ R N + LL
Sbjct: 334 WRWSLPYEKVSRLQKACGDAMNLLGYRHVRSEQEQRNLLLDLL 376
>gi|23238228 chondroitin 6-sulfotransferase 7 [Homo sapiens]
Length = 486
Score = 162 bits (410), Expect = 6e-40
Identities = 127/405 (31%), Positives = 191/405 (47%), Gaps = 66/405 (16%)
Query: 109 AAGEEEE--EQRKEEE-----PPR----------PAVAGPRRHVLLMATTRTGSSFVGEF 151
AAGE E+ E R EE PR AV+ ++H+ + AT RTGSSF+GE
Sbjct: 61 AAGEREQGAEARAAEEGGANQSPRFPSNLSGAVGEAVSREKQHIYVHATWRTGSSFLGEL 120
Query: 152 FNQQGNIFYLFEPLWHIERTVSFEPGGANAAGSALVYRDVLKQLFLCDLYVLEHFITP-- 209
FNQ ++FYL+EP+WH+ + + PG A + AL RD+L+ LF CD VL + P
Sbjct: 121 FNQHPDVFYLYEPMWHLWQ--ALYPGDAESLQGAL--RDMLRSLFRCDFSVLRLYAPPGD 176
Query: 210 ----LPE--DHLTQFMFRRGSSRSLCEDPVCTPFVKK-----VFEKYHCKNRRCGPLNVT 258
P+ + T +FR +++ +C P+C + + E C+ R C P+ +
Sbjct: 177 PAARAPDTANLTTAALFRWRTNKVICSPPLCPGAPRARAEVGLVEDTACE-RSCPPVAIR 235
Query: 259 LAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLVRDPRAVLASRMVAFAGKY 318
CR+ + +K VR+ L L PL DP L+L+V+QL RDPRAV SR+ + G
Sbjct: 236 ALEAECRKYPVVVIKDVRLLDLGVLVPLLRDPGLNLKVVQLFRDPRAVHNSRLKSRQGLL 295
Query: 319 KTWKKWLDDEGQDGLREEEVQRLRG----------------------------NCESIRL 350
+ + L Q G R V G CE+
Sbjct: 296 RESIQVLRTR-QRGDRFHRVLLAHGVGARPGGQSRALPAAPRADFFLTGALEVICEAWLR 354
Query: 351 SAELGLRQPAWLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHD 410
PAWLR RY+ +RYED+ R P + R + RF+G+ ++ + T+ A
Sbjct: 355 DLLFARGAPAWLRRRYLRLRYEDLVRQPRAQLRRLLRFSGLRALAALDAFALNMTRGAAY 414
Query: 411 GSG--IYSTQKNSSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGY 453
G+ + + +++ E WR + + + V+AAC PAMRL Y
Sbjct: 415 GADRPFHLSARDAREAVHAWRERLSREQVRQVEAACAPAMRLLAY 459
>gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase
2 [Homo sapiens]
Length = 530
Score = 162 bits (409), Expect = 8e-40
Identities = 111/375 (29%), Positives = 190/375 (50%), Gaps = 37/375 (9%)
Query: 128 VAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGANAAGSALV 187
V R+ V + T R+GSSF GE FNQ +F+L+EP+WH+ + + PG A + A
Sbjct: 160 VGDKRQLVYVFTTWRSGSSFFGELFNQNPEVFFLYEPVWHVWQKLY--PGDAVSLQGAA- 216
Query: 188 YRDVLKQLFLCDLYVLEHFITPLPED--HLTQF-MFRRGSSRSLCEDPVCTPFVKKVF-- 242
RD+L L+ CDL V + + +P +LT +F +++ +C P+C + K+V
Sbjct: 217 -RDMLSALYRCDLSVFQLY-SPAGSGGRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGL 274
Query: 243 -EKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLVR 301
+ CK +C P + E CR+ + +K VR+ + L PL DP LDL+VI LVR
Sbjct: 275 VDDRVCK--KCPPQRLARFEEECRKYRTLVIKGVRVFDVAVLAPLLRDPALDLKVIHLVR 332
Query: 302 DPRAVLASRMVAFAGKYKTWKK-------------WLDDEGQD-GLREEEVQ-------- 339
DPRAV +SR+ + G + + +L+ G G ++E V
Sbjct: 333 DPRAVASSRIRSRHGLIRESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGVGGPADYHAL 392
Query: 340 -RLRGNCESIRLSAELGLRQPAWLRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVE 398
+ C S+ + + L+ P WL+G Y++VRYED+ P++ R +Y F G+ ++P++E
Sbjct: 393 GAMEVICNSMAKTLQTALQPPDWLQGHYLVVRYEDLVGDPVKTLRRVYDFVGLLVSPEME 452
Query: 399 DWIQKNTQAAHDGSGIY-STQKNSSEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLAR 457
+ T + S + + +N+++ WR ++ F+ + V+ C M + GY+
Sbjct: 453 QFALNMTSGSGSSSKPFVVSARNATQAANAWRTALTFQQIKQVEEFCYQPMAVLGYERVN 512
Query: 458 DAAALTNRSVSLLEE 472
+ + S +LL +
Sbjct: 513 SPEEVKDLSKTLLRK 527
>gi|23943787 dermatan sulfate epimerase-like [Homo sapiens]
Length = 1222
Score = 34.7 bits (78), Expect = 0.20
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 314 FAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCESIRLSAELGLRQPAWLRGRYMLVRYED 373
+A +Y+ +K L + + L ++R++ +L L Y LV++ED
Sbjct: 1087 YAFEYEPLRKELSKSKSNAVSLLSHLWLANTAAALRINTDL-------LPTSYQLVKFED 1139
Query: 374 VARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQA-----AHDGSGIYSTQKNSSEQFEKW 428
+ P + ++ F GIPL+P + I T ++G I T N W
Sbjct: 1140 IVHFPQKTTERIFAFLGIPLSPASLNQILFATSTNLFYLPYEGE-ISPTNTN------VW 1192
Query: 429 RFSMPFKLAQVVQAACGPAMRLFGY 453
+ ++P ++++ C M GY
Sbjct: 1193 KQNLPRDEIKLIENICWTLMDRLGY 1217
>gi|4507677 heat shock protein 90kDa beta, member 1 [Homo sapiens]
Length = 803
Score = 32.3 bits (72), Expect = 0.97
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 48 VSDKLKQIPQALADANSTDPALILAENASLLS--LSELDSAFSQLQSRLRNLSLQLGVEP 105
+ D L++I + D D A++L E A+L S L A+ R+ LSL + +
Sbjct: 694 IRDMLRRIKEDEDDKTVLDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDA 753
Query: 106 AMEAAGEEEEEQRKEE 121
+E EEE E+ E+
Sbjct: 754 KVEEEPEEEPEETAED 769
>gi|66472920 DNAJ domain-containing [Homo sapiens]
Length = 150
Score = 32.3 bits (72), Expect = 0.97
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 277 IRQLEFLQPLAEDPRLDLRVIQLVRDPRAV-LASRMVAFAGKY--KTWK 322
+R E+LQP A+ P D+ +LVR AV L +AFAG+Y + WK
Sbjct: 14 LRYAEYLQPSAKRPDADVDQQRLVRSLIAVGLGVAALAFAGRYAFRIWK 62
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 31.6 bits (70), Expect = 1.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 79 SLSELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKEEEP 123
SL+ D A S R R S+ VE E +EEEE+ +E+EP
Sbjct: 2954 SLTVSDDAESSEPERKRQKSVSDPVEDKKEQESDEEEEEEEEDEP 2998
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 31.2 bits (69), Expect = 2.2
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 28 LVFVVIVFVFIEKE-NKIISRVSDKLKQIPQALADANST-DPALILA----ENASLLSLS 81
LV V VF E E ++I +S+K I A DP IL E LL+
Sbjct: 220 LVSTVGSMVFNEGEAQRLIEILSEKAGIIQDTWHKATQKGDPVAILKRQLEEKEKLLATE 279
Query: 82 ELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQR 118
+ D+A ++ S+LR L+ ++ E A AAGE + +++
Sbjct: 280 QEDAAVAK--SKLRELNKEMAAEKAKAAAGEAKVKKQ 314
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 31.2 bits (69), Expect = 2.2
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 28 LVFVVIVFVFIEKE-NKIISRVSDKLKQIPQALADANST-DPALILA----ENASLLSLS 81
LV V VF E E ++I +S+K I A DP IL E LL+
Sbjct: 220 LVSTVGSMVFNEGEAQRLIEILSEKAGIIQDTWHKATQKGDPVAILKRQLEEKEKLLATE 279
Query: 82 ELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQR 118
+ D+A ++ S+LR L+ ++ E A AAGE + +++
Sbjct: 280 QEDAAVAK--SKLRELNKEMAAEKAKAAAGEAKVKKQ 314
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 30.8 bits (68), Expect = 2.8
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 39 EKENKIISRVSDKLKQIPQALADANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLS 98
E +N ++ + + +Q+ AL D AEN S+ ++EL+ SQ + L L
Sbjct: 392 ETKNAVLEHMEELQEQV--ALLTERLRD-----AENESMAKIAELEKQLSQARKELETLR 444
Query: 99 LQLGVEPAMEAAGEEEEEQRKEEEPPRPAVAGPRR 133
+ AM A+ R+ EP + A P R
Sbjct: 445 ERFSESTAMGAS-------RRPPEPEKAPPAAPTR 472
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 30.4 bits (67), Expect = 3.7
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 46 SRVSDKLKQIPQALADANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEP 105
S+V +L+ + + L+ +N+ L EL + LQSRLR LQ
Sbjct: 1281 SQVHTELQDLQRQLSQNQEEKSKWEGKQNSLESELMELHETMASLQSRLRRAELQ----- 1335
Query: 106 AMEAAGEEEEEQRKEE 121
MEA GE E Q +E
Sbjct: 1336 RMEAQGERELLQAAKE 1351
>gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo
sapiens]
Length = 594
Score = 30.4 bits (67), Expect = 3.7
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 54 QIPQALADANSTDPALILAENA---SLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAA 110
+I Q+L NS +++ EN+ +LL ++ + + + Q LR+ LQL + E
Sbjct: 209 RIGQSLVKQNS----VLMEENSKLEALLGSAKEEILYLRHQVNLRDELLQLYSDSDEEDE 264
Query: 111 GEEEEEQRKEEE 122
EEEEE+ KE E
Sbjct: 265 DEEEEEEEKEAE 276
>gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo
sapiens]
Length = 602
Score = 30.4 bits (67), Expect = 3.7
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 54 QIPQALADANSTDPALILAENA---SLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAA 110
+I Q+L NS +++ EN+ +LL ++ + + + Q LR+ LQL + E
Sbjct: 217 RIGQSLVKQNS----VLMEENSKLEALLGSAKEEILYLRHQVNLRDELLQLYSDSDEEDE 272
Query: 111 GEEEEEQRKEEE 122
EEEEE+ KE E
Sbjct: 273 DEEEEEEEKEAE 284
>gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo
sapiens]
Length = 619
Score = 30.4 bits (67), Expect = 3.7
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 54 QIPQALADANSTDPALILAENA---SLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAA 110
+I Q+L NS +++ EN+ +LL ++ + + + Q LR+ LQL + E
Sbjct: 209 RIGQSLVKQNS----VLMEENSKLEALLGSAKEEILYLRHQVNLRDELLQLYSDSDEEDE 264
Query: 111 GEEEEEQRKEEE 122
EEEEE+ KE E
Sbjct: 265 DEEEEEEEKEAE 276
>gi|5292161 proteasome 26S non-ATPase subunit 4 [Homo sapiens]
Length = 377
Score = 30.4 bits (67), Expect = 3.7
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 58 ALADANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQ 117
+LADA + P ++ E ++L L D F S L+L L V EE+ Q
Sbjct: 178 SLADALISSP-ILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSM-------EEQRQ 229
Query: 118 RKEEEPPRPAVAGPRRHVLLMATTRTGSS 146
R+EEE R A A + ATT T S
Sbjct: 230 RQEEEARRAAAASAAEAGI--ATTGTEDS 256
>gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E [Homo
sapiens]
Length = 708
Score = 30.4 bits (67), Expect = 3.7
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 45 ISRVSDKLKQIPQALADANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGV- 103
+ +V + +K+ DA S L+ + ++ ++ + L+ L+ QL V
Sbjct: 430 LEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVP 489
Query: 104 ----------EPAMEAAGEEEEEQRKEEEPPRPAVAG 130
EP E GEE+EEQ EEEP + +G
Sbjct: 490 AVPPGVRIKEEPVSEE-GEEDEEQEAEEEPMDTSPSG 525
>gi|51093861 caspase recruitment domain protein 10 [Homo sapiens]
Length = 1032
Score = 30.0 bits (66), Expect = 4.8
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 47 RVSDKLKQIPQALADANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEPA 106
R+ D+ I LA + + +L L++ +L S+L+ L G P
Sbjct: 201 RLKDENYMIAMRLAQLSEEKNSAVLRSRDLQLAVDQLKLKVSRLEEECALLRRARGPPPG 260
Query: 107 MEAAGEEEEEQRKEEEP 123
E E+E+E+ KE+EP
Sbjct: 261 AE---EKEKEKEKEKEP 274
>gi|166197690 neuronal guanine nucleotide exchange factor isoform 2
[Homo sapiens]
Length = 618
Score = 30.0 bits (66), Expect = 4.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 105 PAMEAAGEEEEEQRKEEEPPRP 126
PA E EEEEE+ +EEEP P
Sbjct: 117 PASEDTPEEEEEEEEEEEPASP 138
>gi|166197688 neuronal guanine nucleotide exchange factor isoform 1
[Homo sapiens]
Length = 710
Score = 30.0 bits (66), Expect = 4.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 105 PAMEAAGEEEEEQRKEEEPPRP 126
PA E EEEEE+ +EEEP P
Sbjct: 209 PASEDTPEEEEEEEEEEEPASP 230
>gi|148806872 lupus brain antigen 1 [Homo sapiens]
Length = 2375
Score = 30.0 bits (66), Expect = 4.8
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 84 DSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKEEE 122
+ A S L ++ L +L VEP E+ G EEEE+ ++EE
Sbjct: 508 EQAGSPLLAKQVWLKRRLEVEPGKESPGGEEEEEEEDEE 546
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 29.6 bits (65), Expect = 6.3
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 103 VEPAMEAAGEEEEEQRKEEE 122
VEPA E A EEEEE+ EEE
Sbjct: 456 VEPAEEEAEEEEEEEEAEEE 475
>gi|168823443 RAD54-like 2 [Homo sapiens]
Length = 1467
Score = 29.6 bits (65), Expect = 6.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 88 SQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKEEEPPRPAVAGP 131
S ++ +R L + +EP +AA +EE E+RK E R A P
Sbjct: 107 SHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLEQQRKDYAAP 150
>gi|62414289 vimentin [Homo sapiens]
Length = 466
Score = 29.3 bits (64), Expect = 8.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 333 LREEEVQRLRGNCESIRLSAELGLRQPAWLRG-RYMLVRYEDVARGPLQKAREMYR 387
L EEE+Q L+ + + ++ + +P R + +YE VA LQ+A E Y+
Sbjct: 237 LHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYK 292
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 29.3 bits (64), Expect = 8.3
Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 19/137 (13%)
Query: 7 LPQDCRDFVHSLKMRSKYALFLVF-----------------VVIVFVFIEKENKIISRVS 49
+ QDC + ++ +RS ++++F V+ + E+ I+
Sbjct: 369 MTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQATIAETE 428
Query: 50 DKLKQIPQALADANSTDPALILAENASLLSLSELD-SAFSQLQSRLRNLSLQLGVEPAME 108
+K K+ +A+ AL + +S S L+ S + + S R + + E
Sbjct: 429 EKEKRFQEAMEMLKKEHEALTI-RGVDTVSRSSLEMSPLAPVNSHERRSKRRKRMSSGTE 487
Query: 109 AAGEEEEEQRKEEEPPR 125
GE+ + E+ PR
Sbjct: 488 ECGEDRLPKSDSEDGPR 504
>gi|237512980 voltage-gated sodium channel type V alpha isoform e
[Homo sapiens]
Length = 1983
Score = 29.3 bits (64), Expect = 8.3
Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 19/137 (13%)
Query: 7 LPQDCRDFVHSLKMRSKYALFLVF-----------------VVIVFVFIEKENKIISRVS 49
+ QDC + ++ +RS ++++F V+ + E+ I+
Sbjct: 369 MTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQATIAETE 428
Query: 50 DKLKQIPQALADANSTDPALILAENASLLSLSELD-SAFSQLQSRLRNLSLQLGVEPAME 108
+K K+ +A+ AL + +S S L+ S + + S R + + E
Sbjct: 429 EKEKRFQEAMEMLKKEHEALTI-RGVDTVSRSSLEMSPLAPVNSHERRSKRRKRMSSGTE 487
Query: 109 AAGEEEEEQRKEEEPPR 125
GE+ + E+ PR
Sbjct: 488 ECGEDRLPKSDSEDGPR 504
>gi|37622907 voltage-gated sodium channel type V alpha isoform a
[Homo sapiens]
Length = 2016
Score = 29.3 bits (64), Expect = 8.3
Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 19/137 (13%)
Query: 7 LPQDCRDFVHSLKMRSKYALFLVF-----------------VVIVFVFIEKENKIISRVS 49
+ QDC + ++ +RS ++++F V+ + E+ I+
Sbjct: 369 MTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQATIAETE 428
Query: 50 DKLKQIPQALADANSTDPALILAENASLLSLSELD-SAFSQLQSRLRNLSLQLGVEPAME 108
+K K+ +A+ AL + +S S L+ S + + S R + + E
Sbjct: 429 EKEKRFQEAMEMLKKEHEALTI-RGVDTVSRSSLEMSPLAPVNSHERRSKRRKRMSSGTE 487
Query: 109 AAGEEEEEQRKEEEPPR 125
GE+ + E+ PR
Sbjct: 488 ECGEDRLPKSDSEDGPR 504
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,923,095
Number of Sequences: 37866
Number of extensions: 790631
Number of successful extensions: 4826
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4750
Number of HSP's gapped (non-prelim): 72
length of query: 479
length of database: 18,247,518
effective HSP length: 106
effective length of query: 373
effective length of database: 14,233,722
effective search space: 5309178306
effective search space used: 5309178306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.