Guide to the Human Genome
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Name: CHST7 Sequence: fasta or formatted (486aa) NCBI GI: 23238228
Description:

chondroitin 6-sulfotransferase 7

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         64           4
 C cysteine            2.1         10           1
 D aspartate           4.9         24           1
 E glutamate           6.6         32           2
 F phenylalanine       3.3         16           2
 G glycine             7.6         37           2
 H histidine           2.1         10           1
 I isoleucine          1.2          6           1
 K lysine              1.9          9           1
 L leucine            13.6         66           3
 M methionine          1.2          6           1
 N asparagine          1.6          8           1
 P proline             6.4         31           2
 Q glutamine           3.5         17           1
 R arginine           13.2         64           6
 S serine              4.5         22           2
 T threonine           2.7         13           2
 V valine              6.4         31           3
 W tryptophan          1.6          8           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chondroitin 6-sulfotransferase 7 
CHST2                 0.339   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...
CHST6                 0.213   carbohydrate (N-acetylglucosamine 6-O) sulfotransfer...
CHST4                 0.212   carbohydrate (N-acetylglucosamine 6-O) sulfotransfera...
CHST5                 0.210   carbohydrate (N-acetylglucosamine 6-O) sulfotransfer...
CHST1                 0.160   carbohydrate (keratan sulfate Gal-6) sulfotransferase...
CHST3                 0.144   chondroitin 6-sulfotransferase 3 
DSEL                  0.012   dermatan sulfate epimerase-like 
HS3ST3B1              0.009   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST3A1              0.009   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
COL1A2                0.009   alpha 2 type I collagen 
RSPH3                 0.007   radial spoke 3 homolog 
COL29A1               0.006   collagen, type XXIX, alpha 1 
NKX1-2                0.006   NK1 homeobox 2 
COL9A3                0.006   alpha 3 type IX collagen 
HS3ST6                0.006   heparan sulfate (glucosamine) 3-O-sulfotransferase ...
FLJ10357              0.005   hypothetical protein LOC55701 
NKX1-2                0.005   PREDICTED: NK1 homeobox 2 
NKX1-2                0.005   PREDICTED: NK1 homeobox 2 
LOC643355             0.005   PREDICTED: hypothetical protein 
NKX1-2                0.005   PREDICTED: NK1 homeobox 2 
LOC643355             0.005   PREDICTED: hypothetical protein 
C7orf51               0.005   hypothetical protein FLJ37538 
DLL3                  0.004   delta-like 3 protein isoform 1 precursor 
DLL3                  0.004   delta-like 3 protein isoform 2 precursor 
C14orf115             0.004   hypothetical protein LOC55237 
KIAA1919              0.004   sodium-dependent glucose transporter 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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