Guide to the Human Genome
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Name: CCDC152 Sequence: fasta or formatted (254aa) NCBI GI: 198442834
Description:

coiled-coil domain containing 152

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          8           1
 C cysteine            1.2          3           1
 D aspartate           3.9         10           1
 E glutamate          13.0         33           2
 F phenylalanine       1.6          4           1
 G glycine             2.4          6           1
 H histidine           2.0          5           1
 I isoleucine          8.7         22           2
 K lysine             15.7         40           2
 L leucine            10.6         27           2
 M methionine          2.8          7           1
 N asparagine          6.3         16           2
 P proline             0.4          1           1
 Q glutamine           8.3         21           2
 R arginine            4.3         11           3
 S serine              7.5         19           2
 T threonine           2.4          6           1
 V valine              3.5          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 152 
DST                   0.075   dystonin isoform 1e precursor 
GOLGA4                0.069   golgi autoantigen, golgin subfamily a, 4 
ROCK2                 0.062   Rho-associated, coiled-coil containing protein kinas...
KIF5C                 0.062   kinesin family member 5C 
CENPF                 0.062   centromere protein F 
PPL                   0.062   periplakin 
CENPE                 0.062   centromere protein E 
CCDC68                0.060   coiled-coil domain containing 68 
CCDC68                0.060   coiled-coil domain containing 68 
GCC2                  0.060   GRIP and coiled-coil domain-containing 2 
CIT                   0.060   citron 
KIF15                 0.060   kinesin family member 15 
RB1CC1                0.058   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.058   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
FHAD1                 0.058   forkhead-associated (FHA) phosphopeptide binding do...
C9orf93               0.058   hypothetical protein LOC203238 
LOC400352             0.058   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.058   PREDICTED: similar to Putative golgin subfamily A m...
MYH10                 0.058   myosin, heavy polypeptide 10, non-muscle 
SMC2                  0.058   structural maintenance of chromosomes 2 
SMC2                  0.058   structural maintenance of chromosomes 2 
SMC2                  0.058   structural maintenance of chromosomes 2 
CEP135                0.056   centrosome protein 4 
GOLGB1                0.056   golgi autoantigen, golgin subfamily b, macrogolgin ...
CCPG1                 0.056   cell cycle progression 1 isoform 2 
CCPG1                 0.056   cell cycle progression 1 isoform 1 
KIF27                 0.054   kinesin family member 27 
KIF5B                 0.054   kinesin family member 5B 
MYH6                  0.054   myosin heavy chain 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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