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Search of human proteins with 197333695
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197333695 poly(A)-specific ribonuclease (deadenylation
nuclease) isoform 2 [Homo sapiens]
(578 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197333695 poly(A)-specific ribonuclease (deadenylation nuclea... 1174 0.0
gi|4505611 poly(A)-specific ribonuclease (deadenylation nuclease... 1174 0.0
gi|27735155 poly(A)-specific ribonuclease (PARN)-like domain con... 140 2e-33
gi|140560994 growth inhibition and differentiation related prote... 39 0.017
gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens] 38 0.022
gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens] 38 0.022
gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens] 38 0.022
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 37 0.065
gi|6631095 minichromosome maintenance complex component 3 [Homo ... 37 0.065
gi|156564398 target of EGR1, member 1 (nuclear) [Homo sapiens] 36 0.11
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 35 0.14
gi|148746195 trichohyalin [Homo sapiens] 35 0.14
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 35 0.19
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 35 0.25
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 35 0.25
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 35 0.25
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 35 0.25
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 35 0.25
gi|169218106 PREDICTED: hypothetical protein, partial [Homo sapi... 34 0.32
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 34 0.32
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 34 0.32
gi|8923224 leucine rich repeat (in FLII) interacting protein 2 i... 34 0.42
gi|170784854 PTPRF interacting protein, binding protein 2 (lipri... 33 0.55
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 33 0.72
gi|70980531 GGA binding partner [Homo sapiens] 33 0.72
gi|8051636 tRNA exportin [Homo sapiens] 33 0.72
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi... 33 0.94
gi|112789536 troponin T3, skeletal, fast isoform 3 [Homo sapiens] 33 0.94
gi|112789541 troponin T3, skeletal, fast isoform 4 [Homo sapiens] 33 0.94
gi|4505331 N-ethylmaleimide-sensitive factor attachment protein,... 32 1.2
>gi|197333695 poly(A)-specific ribonuclease (deadenylation nuclease)
isoform 2 [Homo sapiens]
Length = 578
Score = 1174 bits (3037), Expect = 0.0
Identities = 578/578 (100%), Positives = 578/578 (100%)
Query: 1 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGF 60
MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGF
Sbjct: 1 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGF 60
Query: 61 DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFI 120
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFI
Sbjct: 61 DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFI 120
Query: 121 DQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVI 180
DQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVI
Sbjct: 121 DQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVI 180
Query: 181 SKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY 240
SKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY
Sbjct: 181 SKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY 240
Query: 241 CPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVE 300
CPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVE
Sbjct: 241 CPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVE 300
Query: 301 SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNK 360
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNK
Sbjct: 301 SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNK 360
Query: 361 LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA 420
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA
Sbjct: 361 LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA 420
Query: 421 FVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNP 480
FVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNP
Sbjct: 421 FVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNP 480
Query: 481 QCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPL 540
QCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPL
Sbjct: 481 QCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPL 540
Query: 541 SEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW 578
SEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW
Sbjct: 541 SEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW 578
>gi|4505611 poly(A)-specific ribonuclease (deadenylation nuclease)
isoform 1 [Homo sapiens]
Length = 639
Score = 1174 bits (3037), Expect = 0.0
Identities = 578/578 (100%), Positives = 578/578 (100%)
Query: 1 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGF 60
MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGF
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGF 121
Query: 61 DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFI 120
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFI
Sbjct: 122 DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFI 181
Query: 121 DQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVI 180
DQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVI
Sbjct: 182 DQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVI 241
Query: 181 SKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY 240
SKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY
Sbjct: 242 SKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY 301
Query: 241 CPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVE 300
CPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVE
Sbjct: 302 CPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVE 361
Query: 301 SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNK 360
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNK
Sbjct: 362 SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNK 421
Query: 361 LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA 420
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA
Sbjct: 422 LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA 481
Query: 421 FVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNP 480
FVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNP
Sbjct: 482 FVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNP 541
Query: 481 QCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPL 540
QCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPL
Sbjct: 542 QCIPYTLQNHYYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPL 601
Query: 541 SEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW 578
SEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW
Sbjct: 602 SEGRKKAKKLKRMKKELSPAGSISKNSPATLFEVPDTW 639
>gi|27735155 poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Homo sapiens]
Length = 520
Score = 140 bits (354), Expect = 2e-33
Identities = 117/422 (27%), Positives = 194/422 (45%), Gaps = 43/422 (10%)
Query: 3 FLLFQFGLCTFK-YDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFD 61
F + Q GL F + +KYI S NFY+FP F D +F Q+SS+ FL GF+
Sbjct: 53 FTVCQIGLSVFSAIEGEANKYIAHSCNFYLFPTTFGIL--DSEFSFQASSVQFLNQYGFN 110
Query: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFID 121
+NK +NGIPY+N+E+E+++R + SP+ + V I D
Sbjct: 111 YNKFLKNGIPYMNEEQEKKIRHDILTGNWRVRS-------SPDKDQIKVVI--------D 155
Query: 122 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVIS 181
+V +E ++E + L TGFQ + L P + T K+ +V+
Sbjct: 156 EVTRWLE---LAKEGDWMTLPGITGFQAFEVQLVLRQALPN------IWTVLKDEGVVVK 206
Query: 182 KVDEEERKRREQQKHAKE----QEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVH 237
KV ++ R + +E + L A GFS + + K ++GHNM++D++H
Sbjct: 207 KVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHE 266
Query: 238 QFYCPLPADLSEFKEMTTCVFPRLLDTKLMA----STQPFKDIINNTSLAE-LEKRLKET 292
+F+ PLP +FK+ +FP L+DTK + F + N + + E L L T
Sbjct: 267 KFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDIWKEMNFPRVSNLSEVYEVLNSDLNPT 326
Query: 293 PFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS---FLSP-PKIHVS 348
+ P++ A Y ++ HEA YDA++ G + +A+ L + P P+
Sbjct: 327 KNSGPEIVHASRCEKY-VETKCPHEAAYDAFLCGSVLLKVAHLLLQKIYHIDPVPESSFP 385
Query: 349 ARSKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFG 408
++ P+ N++ L+R +P +N GPD R +L + K W Q++ F
Sbjct: 386 QYLDVLAPYVNQVNLIRA-GVPKINFSGPDYPSIRPPIL-ILSVKRWPGVSEQQVYHKFQ 443
Query: 409 NI 410
N+
Sbjct: 444 NL 445
>gi|140560994 growth inhibition and differentiation related protein
86 [Homo sapiens]
Length = 778
Score = 38.5 bits (88), Expect = 0.017
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 371 YLNLEGPDLQPKRDHVLHVT----FPKEWKTSDLYQLFSAF--GNIQISWIDDTSAFVSL 424
Y N E PD+ HV FP+E++T DL ++F ++ I W+DDT A
Sbjct: 613 YYNHEVPDIDLSDCEFPHVIEIYDFPQEFRTEDLLRVFCSYQKKGFDIKWVDDTHALGVF 672
Query: 425 SQP-----------EQVKI-AVNTSKYAESYRIQTYAEYMGRKQEEKQ 460
S P VKI ++ + A + + YAE++ +E +
Sbjct: 673 SSPITARDALGIKHTMVKIRPLSQATRAAKAKARAYAEFLQPAKERPE 720
>gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens]
Length = 1127
Score = 38.1 bits (87), Expect = 0.022
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 26/169 (15%)
Query: 355 EPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEW----------KTSDLYQLF 404
+ F N+ ++ ++ Y N +G + + D+ PK W K + ++ +
Sbjct: 367 QEFLNRRYMT---EVDYSNKQGEEQPWEADYARKPNLPKRWDMLTEPDGQEKKQESFKSW 423
Query: 405 SAFGNIQI---------SWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQ----TYAEY 451
A G Q DTS S EQ K ++ SK + S Q + A Y
Sbjct: 424 EASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWKQDTPKSKAGY 483
Query: 452 MGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFTAP 500
+ +Q++++ + W KE D K+ P+ ++Q+ S+T P
Sbjct: 484 VQEEQKKQETPKLWPVQLQKEQDPKKQTPKSWTPSMQSEQNTTKSWTTP 532
>gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens]
Length = 793
Score = 38.1 bits (87), Expect = 0.022
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 26/169 (15%)
Query: 355 EPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEW----------KTSDLYQLF 404
+ F N+ ++ ++ Y N +G + + D+ PK W K + ++ +
Sbjct: 34 QEFLNRRYMT---EVDYSNKQGEEQPWEADYARKPNLPKRWDMLTEPDGQEKKQESFKSW 90
Query: 405 SAFGNIQI---------SWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQ----TYAEY 451
A G Q DTS S EQ K ++ SK + S Q + A Y
Sbjct: 91 EASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWKQDTPKSKAGY 150
Query: 452 MGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFTAP 500
+ +Q++++ + W KE D K+ P+ ++Q+ S+T P
Sbjct: 151 VQEEQKKQETPKLWPVQLQKEQDPKKQTPKSWTPSMQSEQNTTKSWTTP 199
>gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens]
Length = 1077
Score = 38.1 bits (87), Expect = 0.022
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 26/169 (15%)
Query: 355 EPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEW----------KTSDLYQLF 404
+ F N+ ++ ++ Y N +G + + D+ PK W K + ++ +
Sbjct: 367 QEFLNRRYMT---EVDYSNKQGEEQPWEADYARKPNLPKRWDMLTEPDGQEKKQESFKSW 423
Query: 405 SAFGNIQI---------SWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQ----TYAEY 451
A G Q DTS S EQ K ++ SK + S Q + A Y
Sbjct: 424 EASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWKQDTPKSKAGY 483
Query: 452 MGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNHYYRNNSFTAP 500
+ +Q++++ + W KE D K+ P+ ++Q+ S+T P
Sbjct: 484 VQEEQKKQETPKLWPVQLQKEQDPKKQTPKSWTPSMQSEQNTTKSWTTP 532
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 36.6 bits (83), Expect = 0.065
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
QEE+RQ E+ E+ + + + I E +KK Q + E E
Sbjct: 409 QEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEKKMWRQEEKIHEQEKIRE 468
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYI---------VISKVDE 185
E K + E + K+ Q W+ + +H + + K+E + K+ E
Sbjct: 469 EEKRQEQEEMWRQEEKIHEQEEIWRQKEKMHEQEEKIRKQEEKVWRQEEKIREQEEKIRE 528
Query: 186 EERKRREQQKHAKEQEEL 203
+E K Q++ +EQEE+
Sbjct: 529 QEEKMWRQEEKIREQEEM 546
Score = 33.1 bits (74), Expect = 0.72
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 29/149 (19%)
Query: 63 NKVFRNGIPYLNQEE-----ERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQK 117
+K++R QEE E ++REQ ++++ Q K I E ++
Sbjct: 570 DKMWRQEEKIREQEEKVWRQEEKIREQEEKRQEQEE----------KMWKQEEKIREQEE 619
Query: 118 KFIDQVVEKI---EDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKK 174
K +Q EKI E+ ++ +E + E G Q + + + E ++ +++
Sbjct: 620 KIQEQE-EKIREQEEKIREQEEMTQEQEEKMGEQEEKMCE----------QEEKMQEQEE 668
Query: 175 ERYIVISKVDEEERKRREQQKHAKEQEEL 203
+ K+ E+E+K REQ++ +EQEE+
Sbjct: 669 TMWRQEEKIREQEKKIREQEEKIREQEEM 697
Score = 32.7 bits (73), Expect = 0.94
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 30/144 (20%)
Query: 64 KVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQV 123
KV+R QEE+RQ +E+ K+ + + K ++Q++ I +
Sbjct: 585 KVWRQEEKIREQEEKRQEQEEKMWKQEEK--------IREQEEKI-----QEQEEKIREQ 631
Query: 124 VEKI---EDLLQSEENKNLDLEP--CTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYI 178
EKI E++ Q +E K + E C ++ + W+ + I E EKK R
Sbjct: 632 EEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEETMWRQEEKIR----EQEKKIR-- 685
Query: 179 VISKVDEEERKRREQQKHAKEQEE 202
E+E K REQ++ +EQEE
Sbjct: 686 ------EQEEKIREQEEMMQEQEE 703
Score = 31.6 bits (70), Expect = 2.1
Identities = 26/131 (19%), Positives = 62/131 (47%), Gaps = 26/131 (19%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
QE+E ++REQ ++ R Q E++ + ++++ + E+ ++ +
Sbjct: 317 QEQEEKIREQEEKIREQ----------------------EEKMRRQEEMMWEKEEKMRRQ 354
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQ 194
E + E Q +++++ K K E + EK+E+ + + E+ K REQ+
Sbjct: 355 EEMMWEKEEKMRRQEEMMWE----KEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIREQE 410
Query: 195 KHAKEQEELND 205
+ +E+E++ +
Sbjct: 411 EKRQEEEKIRE 421
Score = 30.4 bits (67), Expect = 4.6
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQV--VEKIEDLLQ 132
QE+E ++REQ ++ R Q T + + E ++K +Q +++ E+ +
Sbjct: 622 QEQEEKIREQEEKIREQEE----------MTQEQEEKMGEQEEKMCEQEEKMQEQEETMW 671
Query: 133 SEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRRE 192
+E K + E Q + I + E ++ ++++ + K+ E+E K +E
Sbjct: 672 RQEEKIREQEKKIREQEEKIRE----------QEEMMQEQEEKMWEQEEKMCEQEEKMQE 721
Query: 193 QQKHAKEQEE 202
Q++ + QEE
Sbjct: 722 QEEKMRRQEE 731
Score = 29.6 bits (65), Expect = 7.9
Identities = 25/135 (18%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 76 EEERQLREQYD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKI--EDL 130
E+E ++R Q + EK + + + + + ++++ I ++ EK+ ++
Sbjct: 346 EKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQEK 405
Query: 131 LQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHV--ETLETEKKERYIVISKVDEEER 188
++ +E K + E +++ + W+ + I E + ++K+ + K+ E+E+
Sbjct: 406 IREQEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEKKMWRQEEKIHEQEK 465
Query: 189 KRREQQKHAKEQEEL 203
R E+++ +EQEE+
Sbjct: 466 IREEEKR--QEQEEM 478
Score = 29.6 bits (65), Expect = 7.9
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 114 EDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEK 173
E +K ++V + E + + EE E + K+ Q W+ + +H + E+
Sbjct: 503 EKIRKQEEKVWRQEEKIREQEEKIREQEEKMWRQEEKIREQEEMWREEEKMHEQEKIWEE 562
Query: 174 KERYIVISKVDEEERKRREQQKHAKEQEE 202
++R K+ +E K REQ++ QEE
Sbjct: 563 EKRQEQEDKMWRQEEKIREQEEKVWRQEE 591
>gi|6631095 minichromosome maintenance complex component 3 [Homo
sapiens]
Length = 808
Score = 36.6 bits (83), Expect = 0.065
Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 39/240 (16%)
Query: 71 PYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDL 130
P L QE + E+Y RSQ + + + SP T++ T+ + K DL
Sbjct: 580 PVLTQESATYIAEEYSRLRSQDSMSSDTARTSPVTARTLETLIRLATAHAKARMSKTVDL 639
Query: 131 LQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKR 190
+EE L + +K++ + K ET + E+K + + E++RKR
Sbjct: 640 QDAEEAVEL---VQYAYFKKVLEKEKKRKKRSEDESETEDEEEKSQ-----EDQEQKRKR 691
Query: 191 REQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEF 250
R+ ++ + + D FS D + Q + P AD E
Sbjct: 692 RKTRQPDAKDGDSYDPYDFS--------------------DTEEEMPQVHTPKTADSQET 731
Query: 251 KEMTTCVFPRLLDTKLMASTQPFKDI--------INNTSLAELEKRLKETPFNPPKVESA 302
KE L +++L A D+ I L E R E PF+ ++++A
Sbjct: 732 KESQKV---ELSESRLKAFKVALLDVFREAHAQSIGMNRLTESINRDSEEPFSSVEIQAA 788
>gi|156564398 target of EGR1, member 1 (nuclear) [Homo sapiens]
Length = 510
Score = 35.8 bits (81), Expect = 0.11
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 5 LFQFGLCTFKY--DYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDF 62
+ GL FK D + Y+ + FN + ++V + S+ FL GF+F
Sbjct: 97 ILSLGLACFKRQPDKGEHSYLAQVFNLTLLCME--------EYVIEPKSVQFLIQHGFNF 148
Query: 63 NKVFRNGIPYLNQEEERQLREQYDEKRSQA 92
N+ + GIPY + ++ DE +SQ+
Sbjct: 149 NQQYAQGIPY------HKGNDKGDESQSQS 172
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 35.4 bits (80), Expect = 0.14
Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKI--EDLLQ 132
QE+E ++REQ ++ R Q + + + + ++++ I ++ EK+ ++ ++
Sbjct: 305 QEQEEKIREQEEKMRRQEE----MMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIR 360
Query: 133 SEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYI--VISKVDEEERKR 190
+E K + E +++ + W+ + I + + ++E + K+ E+E K
Sbjct: 361 EQEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKM 420
Query: 191 REQQKHAKEQEE 202
EQ++ +EQEE
Sbjct: 421 WEQEEEMQEQEE 432
Score = 32.3 bits (72), Expect = 1.2
Identities = 28/131 (21%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 78 ERQLREQYDE--KRSQANGAGALSYVSPNTSKCPVTIPEDQKKFI-DQVVEKIEDLLQSE 134
++QL+ + D K Q+ A + V N + +++K + ++ +++ E+ +Q +
Sbjct: 248 QQQLQAEADHLGKELQSVSAKLQAQVEENELWNRLNQQQEEKMWRQEEKIQEREEKIQEQ 307
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQ 194
E K + E Q +++++ K K E + EK+E+ + + E+ K REQ+
Sbjct: 308 EEKIREQEEKMRRQEEMMWE----KEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIREQE 363
Query: 195 KHAKEQEELND 205
+ +E+E++ +
Sbjct: 364 EKRQEEEKIRE 374
Score = 31.6 bits (70), Expect = 2.1
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 33/129 (25%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
++EE ++REQ EKR + + + E++ + ++ + + E+++Q +
Sbjct: 366 RQEEEKIREQ--EKRQE--------------QEAKMWRQEEKIREQEEKIREQEEMMQEQ 409
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQ 194
E K G Q + +++ E E E+K R K+ E+E+K REQ+
Sbjct: 410 EEK-------MGEQEEKMWEQ---------EEEMQEQEEKMRRQE-EKIREQEKKIREQE 452
Query: 195 KHAKEQEEL 203
+ +EQEE+
Sbjct: 453 EKIREQEEM 461
Score = 31.6 bits (70), Expect = 2.1
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 38/131 (29%)
Query: 76 EEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKI---EDLLQ 132
E+E +++EQ ++ R Q I E +KK +Q EKI E+++Q
Sbjct: 422 EQEEEMQEQEEKMRRQEE-----------------KIREQEKKIREQE-EKIREQEEMMQ 463
Query: 133 SEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRRE 192
+E K + E K+ Q + E E+K R K+ E+E+K RE
Sbjct: 464 EQEEKMGEQEG------KMCEQEAKMQ----------EQEEKMRRQE-EKIREQEKKIRE 506
Query: 193 QQKHAKEQEEL 203
Q++ +EQEE+
Sbjct: 507 QEEKIREQEEM 517
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 35.4 bits (80), Expect = 0.14
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 73 LNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKI--EDL 130
L QEEE+ LRE+ +++R Q + + E +K+ ++ + E+
Sbjct: 1086 LQQEEEQLLREEPEKRRRQERERQCREEEELQQEEEQLLREEREKRRRQELERQYREEEE 1145
Query: 131 LQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKR 190
+Q EE + L EP K Q L +Y E E +++E ++ +E+E++R
Sbjct: 1146 VQQEEEQLLREEP-----EKRRRQELERQYR-----EEEELQQEEEQLLR---EEQEKRR 1192
Query: 191 REQQKHAKEQEEL 203
+E+++ +E+EEL
Sbjct: 1193 QERERQYREEEEL 1205
Score = 34.3 bits (77), Expect = 0.32
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 73 LNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKI--EDL 130
L QEEE+ LRE+ +++R Q + + E +K+ + + + E+
Sbjct: 996 LQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQYREEEE 1055
Query: 131 LQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKR 190
LQ EE + L E T +R+ Q L +Y K E L+ E+++ + + + E+R+R
Sbjct: 1056 LQQEEEQLLGEERET--RRR---QELERQYRKE---EELQQEEEQ----LLREEPEKRRR 1103
Query: 191 REQQKHAKEQEEL 203
+E+++ +E+EEL
Sbjct: 1104 QERERQCREEEEL 1116
Score = 31.2 bits (69), Expect = 2.7
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 73 LNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKI--EDL 130
L QEEE+ LRE+ +++R Q + + E +K+ + +K E+
Sbjct: 936 LQQEEEQLLREEREKRRRQERERQYRKDKKLQQKEEQLLGEEPEKRRRQEREKKYREEEE 995
Query: 131 LQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKR 190
LQ EE + L E + K Q +Y K ++ E + ++ E ER+
Sbjct: 996 LQQEEEQLLREE-----REKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQY 1050
Query: 191 REQQKHAKEQEEL 203
RE+++ +E+E+L
Sbjct: 1051 REEEELQQEEEQL 1063
Score = 31.2 bits (69), Expect = 2.7
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 28/146 (19%)
Query: 61 DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFI 120
D ++ FR L + EE+QLR Q +++ + + + E ++KF+
Sbjct: 1664 DRDRKFREEEQLLQEGEEQQLRRQERDRKFR-------------EEEQQLRRQERERKFL 1710
Query: 121 DQVV----EKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKER 176
+ +++E + EE + E Q +L Q +Y K + E L E++E+
Sbjct: 1711 QEEQQLRRQELERKFREEEQLRQETE-----QEQLRRQE---RYRKILEEEQLRPEREEQ 1762
Query: 177 YIVISKVDEEERKRREQQKHAKEQEE 202
+ + E +RK RE+++ +E+EE
Sbjct: 1763 QL---RRQERDRKFREEEQLRQEREE 1785
Score = 30.0 bits (66), Expect = 6.1
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 170 ETEKKERYIVISKVDEEERKRREQQKHAKEQEE 202
E E++ER++ + + + E++ R +Q+ +EQEE
Sbjct: 481 EEERRERWLKLEEEERREQQERREQQLRREQEE 513
Score = 30.0 bits (66), Expect = 6.1
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 71 PYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDL 130
P L ++ ERQLR + ++R Q ++ K +++ Q +E+ E L
Sbjct: 788 PPLREQRERQLRAEERQQREQR-------FLPEEEEKEQRRRQRREREKELQFLEEEEQL 840
Query: 131 LQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKR 190
+ E + L E + + ++ + + + E K+ R+ + +K +E+ R
Sbjct: 841 QRRERAQQLQEEEDGLQEDQERRRSQEQRRDQKWRWQLEEERKRRRHTLYAKPALQEQLR 900
Query: 191 REQQKHAKEQEEL 203
+EQQ +E+EEL
Sbjct: 901 KEQQLLQEEEEEL 913
Score = 29.6 bits (65), Expect = 7.9
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 121 DQVVEKIEDLLQSEE-NKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV 179
+ V+ K E+ LQ EE + +L+ RKL Q L + + E + ++ R
Sbjct: 250 ETVLRKEEEKLQEEEPQRQRELQEEEEQLRKLERQELRRERQE----EEQQQQRLRREQQ 305
Query: 180 ISKVDEEERK-----RREQQKHAKEQEE 202
+ + EEER+ RREQQ+ ++QEE
Sbjct: 306 LRRKQEEERREQQEERREQQERREQQEE 333
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 35.0 bits (79), Expect = 0.19
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 22/151 (14%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
QEE+RQ E+ E+ + + + I E +KK Q + E E
Sbjct: 395 QEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEKKMWRQEEKIHEQEKIRE 454
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHV----------------------ETLETE 172
E K + E + K+ Q W+ + +H E + +
Sbjct: 455 EEKRQEQEEMWRQEEKIREQEEIWRQKEKMHEQEKIRKQEEKVWRQEEKMHDQEEKIREQ 514
Query: 173 KKERYIVISKVDEEERKRREQQKHAKEQEEL 203
+++ + K+ E+E K REQ++ +EQEE+
Sbjct: 515 EEKMWRQEEKIREQEEKIREQEEKIREQEEM 545
Score = 33.5 bits (75), Expect = 0.55
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
QE+E ++REQ ++ R Q + + + E+ ++ + ++E+++ +
Sbjct: 317 QEQEEKIREQEEKIREQEEKMRRQEEMMWEKEE-KMRRQEEMMWEKEEKMRRLEEMMWEK 375
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKER-YIVISKVDEEERKRREQ 193
E K +LE Q K+ Q + + I + E++ + + K+ E+E K REQ
Sbjct: 376 EEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQ 435
Query: 194 QKHAKEQEE 202
+K QEE
Sbjct: 436 EKKMWRQEE 444
Score = 30.8 bits (68), Expect = 3.6
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 115 DQKKFIDQVVEKI---EDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLET 171
+Q++ I + EKI E+++Q +E K + E Q K+ Q + + E +
Sbjct: 527 EQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMQEQEKMRRQEEKIREQE----EKIRE 582
Query: 172 EKKERYIVISKVDEEERKRREQQKHAKEQEE 202
+K++ K+ E+E K REQ++ +EQEE
Sbjct: 583 QKEKIREQEEKIWEQEEKIREQEEMMQEQEE 613
Score = 30.4 bits (67), Expect = 4.6
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 114 EDQKKFIDQVVEKI---EDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLE 170
++Q++ I + EKI E+ ++ +E + E Q +++++ K K +E +
Sbjct: 317 QEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWE----KEEKMRRLEEMM 372
Query: 171 TEKKERYIVISKVDEEERKRREQQKHAKEQEELND 205
EK+E+ + + E+ K REQ++ +E+E++ +
Sbjct: 373 WEKEEKIRELEEKMHEQEKIREQEEKRQEEEKIRE 407
Score = 30.0 bits (66), Expect = 6.1
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 115 DQKKFIDQVVEKI---EDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLET 171
DQ++ I + EK+ E+ ++ +E K + E Q +++ + + G E ++
Sbjct: 506 DQEEKIREQEEKMWRQEEKIREQEEKIREQEEKIREQEEMMQEQ---EEKMGEQEEKMQE 562
Query: 172 EKKERYIVISKVDEEERKRREQQKHAKEQEE 202
++K R K+ E+E K REQ++ +EQEE
Sbjct: 563 QEKMRRQE-EKIREQEEKIREQKEKIREQEE 592
Score = 29.6 bits (65), Expect = 7.9
Identities = 25/136 (18%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 75 QEEERQLREQYD---EKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKI--ED 129
+E+E ++R Q + EK + + + + + ++++ I ++ EK+ ++
Sbjct: 331 REQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRLEEMMWEKEEKIRELEEKMHEQE 390
Query: 130 LLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHV--ETLETEKKERYIVISKVDEEE 187
++ +E K + E +++ + W+ + I E + ++K+ + K+ E+E
Sbjct: 391 KIREQEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEKKMWRQEEKIHEQE 450
Query: 188 RKRREQQKHAKEQEEL 203
+ R E+++ +EQEE+
Sbjct: 451 KIREEEKR--QEQEEM 464
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 34.7 bits (78), Expect = 0.25
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 73 LNQEEERQLREQYDEKRSQA---NGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIED 129
L +E++R + + +RS + N ++P V +D+ K + Q VE +E
Sbjct: 257 LKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQEVEGLEG 316
Query: 130 LLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERK 189
LQS+ N L + Q++ + + E L ++ +R ++ E+ +
Sbjct: 317 KLQSQVENNQALSLLSKEQKQRLQE----------QEEMLREQEAQRVREQERLCEQNER 366
Query: 190 RREQQKHAKEQEE 202
REQQK +EQ E
Sbjct: 367 LREQQKTLQEQGE 379
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 34.7 bits (78), Expect = 0.25
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 73 LNQEEERQLREQYDEKRSQA---NGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIED 129
L +E++R + + +RS + N ++P V +D+ K + Q VE +E
Sbjct: 257 LKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQEVEGLEG 316
Query: 130 LLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERK 189
LQS+ N L + Q++ + + E L ++ +R ++ E+ +
Sbjct: 317 KLQSQVENNQALSLLSKEQKQRLQE----------QEEMLREQEAQRVREQERLCEQNER 366
Query: 190 RREQQKHAKEQEE 202
REQQK +EQ E
Sbjct: 367 LREQQKTLQEQGE 379
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 34.7 bits (78), Expect = 0.25
Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
+E++ ++REQ +E Q L + + + + E ++ +++ E+ E+ +Q +
Sbjct: 416 REQDEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQ-EEKIQRQ 474
Query: 135 ENKNLDLEPCTGFQRKLIYQTLS-WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQ 193
E K + E T Q KL+ Q W+ E + ++++ + K+ E+E K + Q
Sbjct: 475 EEKIQEQEEKTWRQEKLLKQEEKIWEQE-----EKMWRQEEKMWEQEEKMQEQEEKMQRQ 529
Query: 194 QKHAKEQE 201
++ +EQE
Sbjct: 530 EEKMREQE 537
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 34.7 bits (78), Expect = 0.25
Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
+E++ ++REQ +E Q L + + + + E ++ +++ E+ E+ +Q +
Sbjct: 416 REQDEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQ-EEKIQRQ 474
Query: 135 ENKNLDLEPCTGFQRKLIYQTLS-WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQ 193
E K + E T Q KL+ Q W+ E + ++++ + K+ E+E K + Q
Sbjct: 475 EEKIQEQEEKTWRQEKLLKQEEKIWEQE-----EKMWRQEEKMWEQEEKMQEQEEKMQRQ 529
Query: 194 QKHAKEQE 201
++ +EQE
Sbjct: 530 EEKMREQE 537
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 34.7 bits (78), Expect = 0.25
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 73 LNQEEERQLREQYDEKRSQA---NGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIED 129
L +E++R + + +RS + N ++P V +D+ K + Q VE +E
Sbjct: 257 LKEEKKRDIHRIQELERSLSELKNQMAEPPSLAPPAVTSVVEQLQDEAKHLRQEVEGLEG 316
Query: 130 LLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERK 189
LQS+ N L + Q++ + + E L ++ +R ++ E+ +
Sbjct: 317 KLQSQVENNQALSLLSKEQKQRLQE----------QEEMLREQEAQRVREQERLCEQNER 366
Query: 190 RREQQKHAKEQEE 202
REQQK +EQ E
Sbjct: 367 LREQQKTLQEQGE 379
>gi|169218106 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 436
Score = 34.3 bits (77), Expect = 0.32
Identities = 25/126 (19%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
+++E Q+REQ ++ R Q L + E+Q + ++ + + E+ ++ +
Sbjct: 258 RKQEEQMREQEEQMREQEEQM--LKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQMREQ 315
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQ 194
E + + E G Q + +++ + + + E + E+ + K +E+ RK+ EQ
Sbjct: 316 EEQMREQEEQMGKQEEQMWEQKEQMWEQKEQMWKQEEQMGEQEEQMQKQEEQVRKQEEQM 375
Query: 195 KHAKEQ 200
+ +EQ
Sbjct: 376 RKQEEQ 381
Score = 33.9 bits (76), Expect = 0.42
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
Q++E Q+ EQ ++ R Q G E+Q + ++ V+K E+ ++ +
Sbjct: 216 QKQEEQMGEQEEQMRKQEEQMGE---------------QEEQVQKQEEQVQKQEEQMRKQ 260
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQ 194
E + + E Q + Q L K +T E E++ R ++ E+E + REQ+
Sbjct: 261 EEQMREQEEQMREQEE---QMLKQKEQTEQEEQTGEQEEQMREQE-EQMREQEEQMREQE 316
Query: 195 KHAKEQEE 202
+ +EQEE
Sbjct: 317 EQMREQEE 324
Score = 32.7 bits (73), Expect = 0.94
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
+E+E Q+REQ ++ R Q G + E K +Q+ E+ E + + E
Sbjct: 306 REQEEQMREQEEQMREQEEQMGKQEEQMWEQKEQMWEQKEQMWKQEEQMGEQEEQMQKQE 365
Query: 135 ENKNLDLEPCTGFQ---RKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRR 191
E E + RK Q + G E + +K++ ++ E++ + R
Sbjct: 366 EQVRKQEEQMRKQEEQMRKQEEQMRKQEEQMGEQKEQMGEQKEQMREQEEQMGEQKEQMR 425
Query: 192 EQQKHAKEQEE 202
+Q++H EQ+E
Sbjct: 426 KQEEHMGEQKE 436
Score = 30.8 bits (68), Expect = 3.6
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
+E+E Q+REQ + R Q G + E +K +Q+ E+ E + + E
Sbjct: 174 REQEGQVREQEGQVREQEGQMGEQEGQMGEQEEQMGEQEEQMQKQEEQMGEQEEQMRKQE 233
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLE--TEKKERYIVISKVDEEERKRRE 192
E E + ++ Q + + E E E++E+ + + E+E + E
Sbjct: 234 EQMGEQEEQVQKQEEQVQKQEEQMRKQEEQMREQEEQMREQEEQMLKQKEQTEQEEQTGE 293
Query: 193 QQKHAKEQEE 202
Q++ +EQEE
Sbjct: 294 QEEQMREQEE 303
Score = 29.6 bits (65), Expect = 7.9
Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 76 EEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEE 135
E+E Q+ EQ ++ + Q G + E +K +QV ++ E + + EE
Sbjct: 203 EQEEQMGEQEEQMQKQEEQMGEQEEQMRKQEEQMGEQEEQVQKQEEQVQKQEEQMRKQEE 262
Query: 136 NKNLDLEPCTGFQRKLIYQTLSWKYPK--GIHVETLETEKKERYIVISKVDEEERKRREQ 193
E + +++ Q + + G E + ++++ ++ E+E + REQ
Sbjct: 263 QMREQEEQMREQEEQMLKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQMREQEEQMREQ 322
Query: 194 QKHAKEQEE 202
++ +QEE
Sbjct: 323 EEQMGKQEE 331
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 34.3 bits (77), Expect = 0.32
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 23/152 (15%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
QEE+RQ E+ E+ + + + I E ++K Q + E E
Sbjct: 456 QEEKRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEEKMWRQEEKIHEQEKIRE 515
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYI---------------- 178
E K + E + K+ Q W+ + IH + + K+E +
Sbjct: 516 EEKRQEQEEMWRQEEKIREQEEIWRQKEKIHEQEEKIRKQEEKMWRQEEKMHDQEEKIRE 575
Query: 179 -------VISKVDEEERKRREQQKHAKEQEEL 203
K+ E+E K REQ++ +EQEE+
Sbjct: 576 QEEKVWRQEEKIREQEEKIREQEEKIREQEEM 607
Score = 31.2 bits (69), Expect = 2.7
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
QE+E ++REQ ++ R Q + + + E+ ++ + + E+++ +
Sbjct: 378 QEQEEKIREQEEKIREQEEKMRRQEEMMWEKEE-KMRRQEEMMWEKEEKMRRQEEMMWEK 436
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQ 194
E K +LE Q K+ Q + + I E+++R +K+ +E K REQ+
Sbjct: 437 EEKIRELEEKMHEQEKIREQEEKRQEEEKIR------EQEKRQEQEAKMWRQEEKIREQE 490
Query: 195 KHAKEQEE 202
+ +EQEE
Sbjct: 491 EKIREQEE 498
Score = 29.6 bits (65), Expect = 7.9
Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQV--VEKIEDLLQ 132
+E+E ++REQ ++ R Q T + + E ++K +Q +++ E+ ++
Sbjct: 588 REQEEKIREQEEKIREQEE----------MTQEQEEKMGEQEEKMCEQEEKMQEQEEKMR 637
Query: 133 SEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRRE 192
+E K + E Q + I + E ++ ++++ + K+ E+E K +E
Sbjct: 638 RQEEKIREQEKKIREQEEKIRE----------QEEMMQEQEEKMWEQEEKMCEQEEKMQE 687
Query: 193 QQKHAKEQEE 202
Q++ + QEE
Sbjct: 688 QEEKMRRQEE 697
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 34.3 bits (77), Expect = 0.32
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 73 LNQEEERQLREQYDEKRSQA---NGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIED 129
L +E++R + + +RS + N ++P V +D+ K + Q VE +E
Sbjct: 257 LKEEKKRDIHRIQELERSLSELKNQMAKPPSLAPPAVTSVVEQLQDEAKHLRQEVEGLEG 316
Query: 130 LLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERK 189
LQS+ N L + Q++ + + E L ++ +R ++ E+ +
Sbjct: 317 KLQSQVENNQALSLLSKEQKQRLQE----------QEEMLREQEVQRVREQERLCEQNER 366
Query: 190 RREQQKHAKEQEE 202
REQQK +EQ E
Sbjct: 367 LREQQKTLQEQGE 379
>gi|8923224 leucine rich repeat (in FLII) interacting protein 2
isoform 2 [Homo sapiens]
Length = 400
Score = 33.9 bits (76), Expect = 0.42
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 26/134 (19%)
Query: 73 LNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKC----------PVTIPEDQKKFIDQ 122
L+++ ++Q E Y S+ N A A + +S N+S+ P T + ++ + +
Sbjct: 60 LDEKSDKQYAENYTRPSSR-NSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRESLSE 118
Query: 123 VVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISK 182
V EK + + S N LD E + LIYQ + K + +E E++E+ +
Sbjct: 119 VEEKYKKAMVS--NAQLDNE-----KNNLIYQVDTLK-------DVIE-EQEEQMAEFYR 163
Query: 183 VDEEERKRREQQKH 196
+EE+ K E+QKH
Sbjct: 164 ENEEKSKELERQKH 177
>gi|170784854 PTPRF interacting protein, binding protein 2 (liprin
beta 2) [Homo sapiens]
Length = 876
Score = 33.5 bits (75), Expect = 0.55
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 81 LREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLD 140
++E ++E SQ N A S T + + E K+ + V + D ++++ K D
Sbjct: 85 IKEWFEESLSQVNHHSA---ASNETYQERLARLEGDKESLILQVSVLTDQVEAQGEKIRD 141
Query: 141 LEPCT-GFQRKL--IYQTLSWKYPKGIHVET----LETEKKERYIVISKVDEEERKRREQ 193
LE C G Q KL + L + +ET L TE E + + +++E+R++ E+
Sbjct: 142 LEVCLEGHQVKLNAAEEMLQQELLSRTSLETQKLDLMTEVSELKLKLVGMEKEQREQEEK 201
Query: 194 QKHAKE 199
Q+ A+E
Sbjct: 202 QRKAEE 207
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 33.1 bits (74), Expect = 0.72
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 28/151 (18%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQV-VEKIEDLLQS 133
+EEE +REQ ++ + Q + +PE ++K +Q +++ E+ +
Sbjct: 460 REEEETMREQEEKMQKQEENMWEQEEKEWQQQR----LPEQKEKLWEQEKMQEQEEKIWE 515
Query: 134 EENKNLDLEPCTGFQRKLIYQTLS---------------------WKYPKGIHVETLETE 172
+E K D E G ++K+ Q W + + +T E E
Sbjct: 516 QEEKIRDQEEMWGQEKKMWRQEKMREQEDQMWEQEEKMRDQEQKMWDQEERMEKKTQEQE 575
Query: 173 KKERYIVISKVDEEERKRREQQKHAKEQEEL 203
KK + K+ EEER R E++K +E+EE+
Sbjct: 576 KKT-WDQEEKMREEERMR-EREKKMREEEEM 604
Score = 31.6 bits (70), Expect = 2.1
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
QE+E ++ EQ ++ R Q G +++K + + + + ED + +
Sbjct: 507 QEQEEKIWEQEEKIRDQEEMWG-----------------QEKKMWRQEKMREQEDQMWEQ 549
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQ 194
E K D E Q + + + + K E E++ K+ EEE REQ+
Sbjct: 550 EEKMRDQEQKMWDQEERMEKKTQEQEKKTWDQEEKMREEERMREREKKMREEEEMMREQE 609
Query: 195 KHAKEQEE 202
+ +EQEE
Sbjct: 610 EKMQEQEE 617
Score = 30.8 bits (68), Expect = 3.6
Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSE 134
+E+E++LREQ E R Q + K + E++ + ++ + + E+ L +
Sbjct: 324 REQEKELREQEKELREQKELREQEEQMQEQEEK--MWEQEEKMREQEEKMWRQEERLWEQ 381
Query: 135 ENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLET--EKKERYIVISKVDEEERKRRE 192
E + + E Q + +++ K + E E+ E+ K+ E+E+K R+
Sbjct: 382 EKQMREQEQKMRDQEERMWEQDERLREKEERMREQEKMWEQVEKMREEKKMQEQEKKTRD 441
Query: 193 QQKHAKEQEELND 205
Q++ +E+E + +
Sbjct: 442 QEEKMQEEERIRE 454
Score = 30.8 bits (68), Expect = 3.6
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 112 IPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLET 171
+PE ++K + + ++ +Q +E K + E ++ + +W K E++
Sbjct: 660 LPEQKEKLWEHEKMQEQEKMQEQEEKIWEQEKME--KKTQEQEKKTWDQEKMREEESMRE 717
Query: 172 EKKERYIVISKVDEEERKRREQQKHAKEQEE 202
+K+ + E+E K +EQ++ +EQEE
Sbjct: 718 REKKMREEEEMMREQEEKMQEQEEKMQEQEE 748
Score = 30.0 bits (66), Expect = 6.1
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 76 EEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEE 135
E++ +LRE+ + R Q + + + E +KK DQ + E+ E
Sbjct: 401 EQDERLREKEERMREQEK-----MWEQVEKMREEKKMQEQEKKTRDQEEKMQEEERIRER 455
Query: 136 NKNLDLEPCTGFQRKLIYQTLS---WKYPKGIHVETLETEKKERYIVISKVDEEERKRRE 192
K + E T +++ Q W+ + + E+KE+ K+ E+E K E
Sbjct: 456 EKKMREEEETMREQEEKMQKQEENMWEQEEKEWQQQRLPEQKEKLWEQEKMQEQEEKIWE 515
Query: 193 QQKHAKEQEEL 203
Q++ ++QEE+
Sbjct: 516 QEEKIRDQEEM 526
Score = 30.0 bits (66), Expect = 6.1
Identities = 28/134 (20%), Positives = 64/134 (47%), Gaps = 24/134 (17%)
Query: 75 QEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQV--VEKIEDLLQ 132
+EEE +REQ ++ + Q + E ++K +Q +++ E+ +
Sbjct: 599 REEEEMMREQEEKMQEQEE-----------------KMQEQEEKMWEQEEKMQEQEEKMW 641
Query: 133 SEENKNLDLEPCTGFQRKLIYQTLS-WKYPKGIHVETLETEKKERYIVISKVDEEERKRR 191
+E K + E Q++L Q W++ K E ++ ++++ I + ++ E+K +
Sbjct: 642 EQEEKMWEQEEKMWEQQRLPEQKEKLWEHEKMQEQEKMQEQEEK----IWEQEKMEKKTQ 697
Query: 192 EQQKHAKEQEELND 205
EQ+K +QE++ +
Sbjct: 698 EQEKKTWDQEKMRE 711
>gi|70980531 GGA binding partner [Homo sapiens]
Length = 441
Score = 33.1 bits (74), Expect = 0.72
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 76 EEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQV-------VEKIE 128
+E + L + +++ +A +S + KC + ++ ++ + EKI+
Sbjct: 215 DEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIK 274
Query: 129 DLL--QSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEE 186
+ L QS+E K + LE C +R+ + L V + EK+ + KV EE
Sbjct: 275 EALIQQSQEQKEI-LEKCLEEERQRNKEAL---------VSAAKLEKEAVKDAVLKVVEE 324
Query: 187 ERKRRE----------QQKHAKEQEELNDAV 207
ERK E + +HAK+QE+++ +
Sbjct: 325 ERKNLEKAHAEERELWKTEHAKDQEKVSQEI 355
>gi|8051636 tRNA exportin [Homo sapiens]
Length = 962
Score = 33.1 bits (74), Expect = 0.72
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 111 TIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQT-----LSWKYP---K 162
++ + FI+ ++ +I+DLL+ +N + + IY+T ++ +YP K
Sbjct: 554 SLNKQMNPFIEDILNRIQDLLELSPPENGHQSLLSSDDQLFIYETAGVLIVNSEYPAERK 613
Query: 163 GIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGF-SRVIHAIAN--S 219
+ L T E++ ++ E+ +++++ A + LN AVGF SR A +N +
Sbjct: 614 QALMRNLLTPLMEKFKILL---EKLMLAQDEERQASLADCLNHAVGFASRTSKAFSNKQT 670
Query: 220 GKLVIGHNMLLDVMHT-VHQFYCPLPADL 247
K + LD + T + CPL D+
Sbjct: 671 VKQCGCSEVYLDCLQTFLPALSCPLQKDI 699
>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
sapiens]
Length = 631
Score = 32.7 bits (73), Expect = 0.94
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 68 NGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKK-----FIDQ 122
+G+P L E L +E+ A S + TS+ VT+ D F +
Sbjct: 9 DGLPDLGTES---LFSSPEEQSGAVAATEASSDIDIATSELSVTVTGDGSDSRDGGFPND 65
Query: 123 VVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISK 182
+ Q +++++LE F+ L+ + YP ET E+ E
Sbjct: 66 ASTENRSSDQESASEDIELESLEDFEHFLMSGESLFHYPLVGEEETEREEEDEEIQEEGG 125
Query: 183 VDEEERKRREQQKHAKEQEE 202
+EEE + E+++ +E+EE
Sbjct: 126 EEEEEEEEEEEEEEEEEEEE 145
>gi|112789536 troponin T3, skeletal, fast isoform 3 [Homo sapiens]
Length = 250
Score = 32.7 bits (73), Expect = 0.94
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 23/129 (17%)
Query: 73 LNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQ 132
++ EE Q+ EQY+E+ P IPE +K D D+ +
Sbjct: 1 MSDEEVEQVEEQYEEEEEAQEEEEVQEEEKPRPKLTAPKIPEGEKVDFD-------DIQK 53
Query: 133 SEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRRE 192
+NK+L + Q L H E + E++E + ++++ +R E
Sbjct: 54 KRQNKDL-----------MELQALI-----DSHFEARKKEEEELVALKERIEKRRAERAE 97
Query: 193 QQKHAKEQE 201
QQ+ E+E
Sbjct: 98 QQRIRAEKE 106
>gi|112789541 troponin T3, skeletal, fast isoform 4 [Homo sapiens]
Length = 250
Score = 32.7 bits (73), Expect = 0.94
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 23/129 (17%)
Query: 73 LNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQ 132
++ EE Q+ EQY+E+ P IPE +K D D+ +
Sbjct: 1 MSDEEVEQVEEQYEEEEEAQEEEEVQEEEKPRPKLTAPKIPEGEKVDFD-------DIQK 53
Query: 133 SEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRRE 192
+NK+L + Q L H E + E++E + ++++ +R E
Sbjct: 54 KRQNKDL-----------MELQALI-----DSHFEARKKEEEELVALKERIEKRRAERAE 97
Query: 193 QQKHAKEQE 201
QQ+ E+E
Sbjct: 98 QQRIRAEKE 106
>gi|4505331 N-ethylmaleimide-sensitive factor attachment protein,
gamma [Homo sapiens]
Length = 312
Score = 32.3 bits (72), Expect = 1.2
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 453 GRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQN---HYYRNNSFTAPSTVGKRNLS 509
GR+ +E + + ++ +KE ++ P C T+ H +RN+ A V +
Sbjct: 167 GRRFDEAALSIQKEKNIYKEIENY---PTCYKKTIAQVLVHLHRNDYVAAERCVRESYSI 223
Query: 510 P----SQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPAGSISK 565
P S++ A LE + G + + +D C PL + K + P G I K
Sbjct: 224 PGFNGSEDCAALEQLLEGYDQQDQDQVSDVCNSPLFKYMDN-DYAKLGLSLVVPGGGIKK 282
Query: 566 NSPATLFEVPD 576
SPAT PD
Sbjct: 283 KSPATPQAKPD 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,034,204
Number of Sequences: 37866
Number of extensions: 1081601
Number of successful extensions: 6964
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 6250
Number of HSP's gapped (non-prelim): 600
length of query: 578
length of database: 18,247,518
effective HSP length: 108
effective length of query: 470
effective length of database: 14,157,990
effective search space: 6654255300
effective search space used: 6654255300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.