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Search of human proteins with 197116396
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197116396 hypothetical protein LOC284677 [Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197116396 hypothetical protein LOC284677 [Homo sapiens] 493 e-140
gi|61966777 V-set and immunoglobulin domain containing 8 [Homo s... 191 5e-49
gi|109134327 PTD016 protein [Homo sapiens] 37 0.011
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap... 34 0.095
gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo sa... 34 0.095
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap... 34 0.095
gi|78482617 general transcription factor IIIC, polypeptide 2, be... 33 0.28
gi|4504205 general transcription factor IIIC, polypeptide 2, bet... 33 0.28
gi|116235485 delta-notch-like EGF repeat-containing transmembran... 33 0.28
gi|149944516 tet oncogene family member 3 [Homo sapiens] 32 0.62
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 32 0.62
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 32 0.62
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 32 0.62
gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo ... 31 1.1
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 31 1.1
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 30 1.4
gi|13994190 frizzled 8 [Homo sapiens] 30 1.4
gi|123701942 hypothetical protein LOC199990 isoform 2 [Homo sapi... 30 1.8
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 30 1.8
gi|194272140 dendrin [Homo sapiens] 30 2.3
gi|15721939 metastatic lymph node 51 [Homo sapiens] 30 2.3
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 29 3.1
gi|38373671 SEC24-related protein C [Homo sapiens] 29 3.1
gi|38373669 SEC24-related protein C [Homo sapiens] 29 3.1
gi|154759249 keratin associated protein 10-11 [Homo sapiens] 29 3.1
gi|63053515 keratin associated protein 10-3 [Homo sapiens] 29 3.1
gi|28195386 sex-determining region Y-box 2 [Homo sapiens] 29 4.0
gi|134244285 Notch homolog 3 [Homo sapiens] 29 4.0
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] 29 4.0
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 29 4.0
>gi|197116396 hypothetical protein LOC284677 [Homo sapiens]
Length = 235
Score = 493 bits (1269), Expect = e-140
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MGMLAPGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPP 60
MGMLAPGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPP
Sbjct: 1 MGMLAPGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPP 60
Query: 61 PCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPC 120
PCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPC
Sbjct: 61 PCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPC 120
Query: 121 AHSCAHPGLPPHLVHKLPLSYLQTQDTDAASRRINAPLAAGWSWLRLWLVTLASGVDFPQ 180
AHSCAHPGLPPHLVHKLPLSYLQTQDTDAASRRINAPLAAGWSWLRLWLVTLASGVDFPQ
Sbjct: 121 AHSCAHPGLPPHLVHKLPLSYLQTQDTDAASRRINAPLAAGWSWLRLWLVTLASGVDFPQ 180
Query: 181 VSAWMRALPSPDCPGLRTTGEQMQKLLLKENKVKTRKSKRRSGEGSHLTTSILEQ 235
VSAWMRALPSPDCPGLRTTGEQMQKLLLKENKVKTRKSKRRSGEGSHLTTSILEQ
Sbjct: 181 VSAWMRALPSPDCPGLRTTGEQMQKLLLKENKVKTRKSKRRSGEGSHLTTSILEQ 235
>gi|61966777 V-set and immunoglobulin domain containing 8 [Homo
sapiens]
Length = 414
Score = 191 bits (485), Expect = 5e-49
Identities = 90/91 (98%), Positives = 91/91 (100%)
Query: 21 QEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACE 80
+EDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACE
Sbjct: 324 REDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACE 383
Query: 81 AGPSPVYVKVKSAEPADCAEGPVQCKNGLLV 111
AGPSPVYVKVKSAEPADCAEGPVQCKNGLLV
Sbjct: 384 AGPSPVYVKVKSAEPADCAEGPVQCKNGLLV 414
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 37.4 bits (85), Expect = 0.011
Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 23/205 (11%)
Query: 20 GQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAAC 79
G E P K SG + + +RS + ++PP G ED + C
Sbjct: 16 GHERRQRPEAKTSGSEKKYLRAM-----QANRS--QLHSPPGTGSSEDASTPQCVHTRLT 68
Query: 80 EAGPSP----VYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVH 135
G P V++++ S P +CAE + + S H CAH C H L H
Sbjct: 69 GEGSCPHSGDVHIQINSI-PKECAEN---ASSRNIRSGVHS---CAHGCVHSRLRGHSHS 121
Query: 136 KLPLSYLQTQDTDAASRRINAPLAAGWSWLRLWLVTLASGVDFPQVSAWMRALPSPDCP- 194
+ L T DT A S + + + +L WL + V M+ +
Sbjct: 122 EARL----TDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGI 177
Query: 195 GLRTTGEQMQKLLLKENKVKTRKSK 219
GL TT K ++ + ++ R SK
Sbjct: 178 GLLTTFMYANKSIVNQVFLRERSSK 202
>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sapiens]
Length = 3667
Score = 34.3 bits (77), Expect = 0.095
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 112 SSPHCEEPCAHSCAHPGLPPH 132
SSPHC EP SC +PG+P H
Sbjct: 3300 SSPHCIEPTQTSCENPGVPRH 3320
>gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo
sapiens]
Length = 3538
Score = 34.3 bits (77), Expect = 0.095
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 112 SSPHCEEPCAHSCAHPGLPPH 132
SSPHC EP SC +PG+P H
Sbjct: 3171 SSPHCIEPTQTSCENPGVPRH 3191
>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sapiens]
Length = 3707
Score = 34.3 bits (77), Expect = 0.095
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 112 SSPHCEEPCAHSCAHPGLPPH 132
SSPHC EP SC +PG+P H
Sbjct: 3340 SSPHCIEPTQTSCENPGVPRH 3360
>gi|78482617 general transcription factor IIIC, polypeptide 2, beta
110kDa [Homo sapiens]
Length = 911
Score = 32.7 bits (73), Expect = 0.28
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 6 PGPLQGRRPRKGHKGQEDAVAPGC------------------KASGRGSRVTHLLGYPTQ 47
PG +G R RKG K + P K GR S+ LL
Sbjct: 99 PGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLL----L 154
Query: 48 NVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKN 107
+S+ L R + P PED A + +Y++ + E + PV C
Sbjct: 155 KLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPVSCPE 214
Query: 108 GLLVSSPHCEEPCAHSCAHPG 128
G VSSP + A PG
Sbjct: 215 GPKVSSPTKPKKIRQPAACPG 235
>gi|4504205 general transcription factor IIIC, polypeptide 2, beta
110kDa [Homo sapiens]
Length = 911
Score = 32.7 bits (73), Expect = 0.28
Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 6 PGPLQGRRPRKGHKGQEDAVAPGC------------------KASGRGSRVTHLLGYPTQ 47
PG +G R RKG K + P K GR S+ LL
Sbjct: 99 PGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLL----L 154
Query: 48 NVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKN 107
+S+ L R + P PED A + +Y++ + E + PV C
Sbjct: 155 KLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPVSCPE 214
Query: 108 GLLVSSPHCEEPCAHSCAHPG 128
G VSSP + A PG
Sbjct: 215 GPKVSSPTKPKKIRQPAACPG 235
>gi|116235485 delta-notch-like EGF repeat-containing transmembrane
[Homo sapiens]
Length = 737
Score = 32.7 bits (73), Expect = 0.28
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 10/108 (9%)
Query: 24 AVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGP 83
A APG + + + LLG + SL P P A PC C + P
Sbjct: 6 AQAPGAQLLPALALLLLLLGAGPRG--SSLANPVPAAPLSAPGPCAAQPCRNGGVCTSRP 63
Query: 84 SPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCE---EPCAHSCAHPG 128
P PA E C +S +C+ +PCA + H G
Sbjct: 64 EP-----DPQHPAPAGEPGYSCTCPAGISGANCQLVADPCASNPCHHG 106
>gi|149944516 tet oncogene family member 3 [Homo sapiens]
Length = 1660
Score = 31.6 bits (70), Expect = 0.62
Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 80 EAGPSPVYVKVK--SAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVHKL 137
EA P+ VKV+ S+ PA A PV + SS EP H A L HL HK
Sbjct: 347 EALPTKPKVKVEAPSSSPAP-APSPVLQREAPTPSS----EPDTHQKAQTALQQHLHHKR 401
Query: 138 PLSYLQTQDTDAASRRINAPLAAGW 162
L Q DT + + P A GW
Sbjct: 402 SLFLEQVHDTSFPAP--SEPSAPGW 424
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 31.6 bits (70), Expect = 0.62
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 11 GRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVAL 70
G RPR Q P G+ L P V+ ++ +PPPCGGP
Sbjct: 58 GARPRASPPPQGPLPGPP------GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGG 111
Query: 71 APCTA--AAACEAGPSPVYVKVKSA-EPADCAEGPVQCK 106
P A AAA G + V V V A C GP K
Sbjct: 112 GPGDALGAAAAGVGAAGVVVGVGGAVGVGGCCSGPGHSK 150
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 31.6 bits (70), Expect = 0.62
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 11 GRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVAL 70
G RPR Q P G+ L P V+ ++ +PPPCGGP
Sbjct: 58 GARPRASPPPQGPLPGPP------GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGG 111
Query: 71 APCTA--AAACEAGPSPVYVKVKSA-EPADCAEGPVQCK 106
P A AAA G + V V V A C GP K
Sbjct: 112 GPGDALGAAAAGVGAAGVVVGVGGAVGVGGCCSGPGHSK 150
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 31.6 bits (70), Expect = 0.62
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 11 GRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVAL 70
G RPR Q P G+ L P V+ ++ +PPPCGGP
Sbjct: 58 GARPRASPPPQGPLPGPP------GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGG 111
Query: 71 APCTA--AAACEAGPSPVYVKVKSA-EPADCAEGPVQCK 106
P A AAA G + V V V A C GP K
Sbjct: 112 GPGDALGAAAAGVGAAGVVVGVGGAVGVGGCCSGPGHSK 150
>gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo
sapiens]
Length = 474
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 61 PCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPC 120
PCG P A+ T AA A S V P D G V + +L + PC
Sbjct: 404 PCGHPCQSAVCRATVRAAVRASVSECCV------PGDSQGGRVGIRVRVLCAGQRSGRPC 457
Query: 121 AHSC 124
H C
Sbjct: 458 GHPC 461
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 18/97 (18%)
Query: 59 PPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEG----------------P 102
PPP GG + AP GP P+ + ++P G
Sbjct: 278 PPPVGGAVAQSSAPLPPFPGAATGPQPMMAAAQPSQPQGAGPGGQTLPPTNVTLAQPAMS 337
Query: 103 VQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVHKLPL 139
+ + G V +P ++P + P +PP H LP+
Sbjct: 338 LPPQPGPAVGAPAAQQPQQFAYPQPQIPPG--HLLPV 372
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 30.4 bits (67), Expect = 1.4
Identities = 22/58 (37%), Positives = 22/58 (37%)
Query: 27 PGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGPS 84
PG G G L G P Q V L P GGP P AAAA AG S
Sbjct: 13 PGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSS 70
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 30.4 bits (67), Expect = 1.4
Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 6 PGPLQGRRPRKGH-KGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGG 64
P P G +P G G+ P + GRG P + + A PP GG
Sbjct: 168 PPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARGGGGGGK---ARPPGGG 224
Query: 65 PEDVALAPCTAAAACEAGP-------SPVYVKVKSAEPADCA 99
APC C A P+Y +VK+ + A+CA
Sbjct: 225 A-----APCEPGCQCRAPMVSVSSERHPLYNRVKTGQIANCA 261
>gi|123701942 hypothetical protein LOC199990 isoform 2 [Homo
sapiens]
Length = 180
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 27 PGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGP 83
P GR R+ H G ++ +RSL ++ AP PC P AAA + P
Sbjct: 92 PDLWGPGRSYRLLHGAGGHLESPARSLPQRPAPDPCRAPRVEQQPSVEGAAALRSCP 148
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 30.0 bits (66), Expect = 1.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 21 QEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACE 80
Q AV PG SGRG + +L +++ S+ R + E+ A A
Sbjct: 422 QTSAVPPGTSLSGRGPTPSLVL---SKDSSKEQARNFLKQALSALEE-------AGAPAP 471
Query: 81 AGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVHKLPLS 140
PSP V S++P A L SSP GLP + PLS
Sbjct: 472 GRPSPATAAVPSSQPKTEAPQASPLAKPLQSSSPRV----------LGLPSRMEPPAPLS 521
Query: 141 YLQTQDTDA 149
T A
Sbjct: 522 TSSTSQASA 530
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 29.6 bits (65), Expect = 2.3
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 6 PGPLQGR--------RPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKY 57
P P Q R +P G G+ + PG S R +LG P V+ +
Sbjct: 507 PSPCQKRLSSSRLLHQPGGGRGGEAEGGRPG--DSTLEERTFRILGLPAPEVNL----RD 560
Query: 58 APPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSA 93
AP G PE AL P + A A S V V + A
Sbjct: 561 APTQPGSPEHQALGPAASGAQGRAEGSEVAVVQRRA 596
>gi|15721939 metastatic lymph node 51 [Homo sapiens]
Length = 703
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 15 RKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAP----PPCGGPEDVAL 70
++G G A G G V H + Y ++ + ++ R +P P G PE
Sbjct: 320 KEGRAGFRPVEAGGQHGGRSGETVKHEISYRSRRLEQTSVRDPSPEADAPVLGSPEKEEA 379
Query: 71 APCTAAAACEAGPSP 85
A AAA +A P P
Sbjct: 380 ASEPPAAAPDAAPPP 394
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 29.3 bits (64), Expect = 3.1
Identities = 45/165 (27%), Positives = 54/165 (32%), Gaps = 35/165 (21%)
Query: 4 LAPGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCG 63
L P P R P G AV C A+ S + P ++RR A
Sbjct: 57 LVPAPAAVRPPVAGPPATAPAVV--CPAAAGPSAASLRAANPLAVAPAAVRRPAATLGAA 114
Query: 64 GPEDVALAPCTAAAA-------CEAGP-------------SPVYVKVKSAEPA-----DC 98
P VA A AAA C A P +P+ V +A PA
Sbjct: 115 SPAAVAPAAVCPAAASPSAASLCAASPTAAAPAAASPAAAAPLAVNPAAAAPAAACVQSV 174
Query: 99 AEGP-VQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVHKLPLSYL 142
AE P VSSP PCA +PP L+YL
Sbjct: 175 AESPATPLAIAQPVSSPAAPAPCA-------VPPLAAEPTALAYL 212
>gi|38373671 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 29.3 bits (64), Expect = 3.1
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 6 PGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGG- 64
P P+ + + GQ + AP V P Q +SR APP G
Sbjct: 16 PQPIYPGYHQSSYGGQSGSTAPAIPYGAYNGPVPGYQQTPPQGMSR------APPSSGAP 69
Query: 65 PEDVALAPCTAAAACEAGPSPV 86
P A APC AA + G V
Sbjct: 70 PASTAQAPCGQAAYGQFGQGDV 91
>gi|38373669 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 29.3 bits (64), Expect = 3.1
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 6 PGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGG- 64
P P+ + + GQ + AP V P Q +SR APP G
Sbjct: 16 PQPIYPGYHQSSYGGQSGSTAPAIPYGAYNGPVPGYQQTPPQGMSR------APPSSGAP 69
Query: 65 PEDVALAPCTAAAACEAGPSPV 86
P A APC AA + G V
Sbjct: 70 PASTAQAPCGQAAYGQFGQGDV 91
>gi|154759249 keratin associated protein 10-11 [Homo sapiens]
Length = 298
Score = 29.3 bits (64), Expect = 3.1
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 16/64 (25%)
Query: 65 PEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSC 124
PE PC+A + C PS V C PV C VSSP C+ C S
Sbjct: 23 PESCCEPPCSAPSCCAPAPSLSLV---------CT--PVSC-----VSSPCCQAACEPSA 66
Query: 125 AHPG 128
G
Sbjct: 67 CQSG 70
>gi|63053515 keratin associated protein 10-3 [Homo sapiens]
Length = 221
Score = 29.3 bits (64), Expect = 3.1
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 65 PEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSC 124
PE PC A + C P V P C P C SP C+ C SC
Sbjct: 23 PESCCEPPCCATSCCAPAPCLTLV----CTPVSCVSSP--CCQAACEPSP-CQSGCTSSC 75
Score = 28.5 bits (62), Expect = 5.2
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 20/85 (23%)
Query: 58 APPPC----GGPEDVALAPCTAAAACEAGP---------SPVYVKVKSAEPADCAEGPVQ 104
AP PC P +PC AACE P +P + S +PA C P
Sbjct: 38 APAPCLTLVCTPVSCVSSPC-CQAACEPSPCQSGCTSSCTPSCCQQSSCQPACCTSSP-- 94
Query: 105 CKNGLLVSSPHCEEP--CAHSCAHP 127
C+ V P C +P C C P
Sbjct: 95 CQQACCV--PVCCKPVCCVPVCCKP 117
>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
Length = 317
Score = 28.9 bits (63), Expect = 4.0
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 36 SRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEP 95
S T++ G PT ++S S + G +AL + EA SP V S
Sbjct: 212 SSQTYMNGSPTYSMSYSQQ---------GTPGMALGSMGSVVKSEASSSPPVVTSSSHSR 262
Query: 96 ADCAEGPVQCKNGLLVSSPHCEEPCAHSCAH 126
A C G ++ + + EP A S H
Sbjct: 263 APCQAGDLRDMISMYLPGAEVPEPAAPSRLH 293
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 28.9 bits (63), Expect = 4.0
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 55 RKYAPPPCGGPEDVALAPCTAAAACEAGPSPVYV---------KVKSAEPADCAEGPVQC 105
R + P C P+ +PC A C GP ++ + ++ +C G
Sbjct: 110 RGFRGPDCSLPDPCLSSPCAHGARCSVGPDGRFLCSCPPGYQGRSCRSDVDECRVGEPCR 169
Query: 106 KNGLLVSSP---HCEEPCAHS---CAHPGLP 130
G +++P C+ P ++ C +P +P
Sbjct: 170 HGGTCLNTPGSFRCQCPAGYTGPLCENPAVP 200
>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 28.9 bits (63), Expect = 4.0
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 6 PGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRV-THLLGYPTQNVSRSLR----RKYAPP 60
PG L+G R + K + A PG R R H PT R R R AP
Sbjct: 1211 PGALRGNRSDRSRKRKAIASTPGALLGNRSDRSRKHKAIAPTPGAPRIDRSPACRAIAPT 1270
Query: 61 P--CGGPEDVALAPCTAAAACEAGPS 84
P G A+AP ++ P+
Sbjct: 1271 PGALGDDSSTAIAPTPGTPRGDSSPA 1296
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 4.0
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 5 APGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGG 64
AP P RP PG SG G+ + + P+Q+ S S R AP P G
Sbjct: 72 APHPDSRTRPAARPPHPRTRSPPG--RSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPG 129
Query: 65 PEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQ 104
+P AA A +P + P +G Q
Sbjct: 130 CSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,881,560
Number of Sequences: 37866
Number of extensions: 643133
Number of successful extensions: 2320
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2256
Number of HSP's gapped (non-prelim): 111
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.