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Search of human proteins with 196049384
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|196049384 family with sequence similarity 58, member A
isoform 2 [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|196049384 family with sequence similarity 58, member A isofor... 473 e-134
gi|196049382 family with sequence similarity 58, member A isofor... 461 e-130
gi|157502165 family with sequence similarity 58 member B [Homo s... 370 e-103
gi|150417989 cyclin K isoform 1 [Homo sapiens] 96 2e-20
gi|38176158 cyclin K isoform 2 [Homo sapiens] 96 2e-20
gi|9945320 cyclin L1 [Homo sapiens] 94 7e-20
gi|88758580 cyclin L2 isoform A [Homo sapiens] 93 2e-19
gi|17978469 cyclin T2 isoform b [Homo sapiens] 75 4e-14
gi|4502629 cyclin T2 isoform a [Homo sapiens] 75 4e-14
gi|221554516 cyclin L2 isoform C [Homo sapiens] 73 2e-13
gi|221554518 cyclin L2 isoform D [Homo sapiens] 73 2e-13
gi|88758578 cyclin L2 isoform B [Homo sapiens] 73 2e-13
gi|17978466 cyclin T1 [Homo sapiens] 63 2e-10
gi|61676091 cyclin C isoform a [Homo sapiens] 63 2e-10
gi|4502623 cyclin H [Homo sapiens] 44 1e-04
gi|61676093 cyclin C isoform b [Homo sapiens] 42 6e-04
gi|91208437 GEM interacting protein [Homo sapiens] 31 0.77
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 30 1.7
gi|5803133 RAB32, member RAS oncogene family [Homo sapiens] 29 2.9
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 29 2.9
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 29 3.8
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens] 28 6.5
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 28 6.5
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 28 6.5
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 28 6.5
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 28 6.5
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 28 6.5
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 28 6.5
gi|38505159 transcription factor-like 5 protein [Homo sapiens] 28 6.5
gi|116517292 cut-like 2 [Homo sapiens] 28 8.5
>gi|196049384 family with sequence similarity 58, member A isoform 2
[Homo sapiens]
Length = 228
Score = 473 bits (1218), Expect = e-134
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC 60
MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC
Sbjct: 1 MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC 60
Query: 61 ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS 120
ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS
Sbjct: 61 ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS 120
Query: 121 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG 180
IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG
Sbjct: 121 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG 180
Query: 181 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQIYTMDTEIP 228
ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQIYTMDTEIP
Sbjct: 181 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQIYTMDTEIP 228
>gi|196049382 family with sequence similarity 58, member A isoform 1
[Homo sapiens]
Length = 248
Score = 461 bits (1187), Expect = e-130
Identities = 228/248 (91%), Positives = 228/248 (91%), Gaps = 20/248 (8%)
Query: 1 MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC 60
MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC
Sbjct: 1 MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC 60
Query: 61 ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS 120
ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS
Sbjct: 61 ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS 120
Query: 121 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG 180
IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG
Sbjct: 121 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG 180
Query: 181 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWW--------------------QI 220
ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWW QI
Sbjct: 181 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQVFNDDLTKPIIDNIVSDLIQI 240
Query: 221 YTMDTEIP 228
YTMDTEIP
Sbjct: 241 YTMDTEIP 248
>gi|157502165 family with sequence similarity 58 member B [Homo
sapiens]
Length = 252
Score = 370 bits (951), Expect = e-103
Identities = 192/247 (77%), Positives = 199/247 (80%), Gaps = 20/247 (8%)
Query: 2 EAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCE 61
+A E G EG AP ARVHFRVARFIMEAGVKLGM+SIPIATACTIY KFFCE
Sbjct: 6 DAGEEAGEDAGEDAREGAAAPAARVHFRVARFIMEAGVKLGMQSIPIATACTIYPKFFCE 65
Query: 62 TNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDSI 121
T LDA+DPYLIAMSSIYLAGKVEEQ L DII+VSNRYFNPS EPL LDSR WELRDSI
Sbjct: 66 TILDAFDPYLIAMSSIYLAGKVEEQPLWAHDIISVSNRYFNPSSEPLGLDSRLWELRDSI 125
Query: 122 VQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGA 181
VQ ELLMLRVLRFQVSFQHPHKYLL+YLVSL+NWLN HSWQRTPVAVTAWALLRDSYHG
Sbjct: 126 VQRELLMLRVLRFQVSFQHPHKYLLYYLVSLKNWLNCHSWQRTPVAVTAWALLRDSYHGG 185
Query: 182 LCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWW--------------------QIY 221
LCLRFQAQHIAV VLYLALQVYGVEVPAEVEAEK WW QIY
Sbjct: 186 LCLRFQAQHIAVVVLYLALQVYGVEVPAEVEAEKLWWQAFSDDLTKPIIDTIVSDLIQIY 245
Query: 222 TMDTEIP 228
T+DTEIP
Sbjct: 246 TIDTEIP 252
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 96.3 bits (238), Expect = 2e-20
Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 22/216 (10%)
Query: 20 PAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYL 79
PA EAR ARFI + G +LG+ +AT +H+F+ + + Y+ ++L
Sbjct: 43 PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL 102
Query: 80 AGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWEL----RDSIVQCELLMLRVLRFQ 135
AGKVEE + +DII + N D +F + ++ ++ E ++L+ ++F
Sbjct: 103 AGKVEETPKKCKDIIKTARSLLN--------DVQFGQFGDDPKEEVMVLERILLQTIKFD 154
Query: 136 VSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAV 195
+ +HP+++LL Y L+ N+ + AW + DS L L+++ + IAVAV
Sbjct: 155 LQVEHPYQFLLKYAKQLKGDKNKIQ----KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 210
Query: 196 LYLALQVYGVEVPAEVEAEKP----WWQIYTMDTEI 227
+YLA ++ E+ + KP WW+ + D +
Sbjct: 211 MYLAGRLCKFEI--QEWTSKPMYRRWWEQFVQDVPV 244
>gi|38176158 cyclin K isoform 2 [Homo sapiens]
Length = 354
Score = 96.3 bits (238), Expect = 2e-20
Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 22/216 (10%)
Query: 20 PAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYL 79
PA EAR ARFI + G +LG+ +AT +H+F+ + + Y+ ++L
Sbjct: 43 PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL 102
Query: 80 AGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWEL----RDSIVQCELLMLRVLRFQ 135
AGKVEE + +DII + N D +F + ++ ++ E ++L+ ++F
Sbjct: 103 AGKVEETPKKCKDIIKTARSLLN--------DVQFGQFGDDPKEEVMVLERILLQTIKFD 154
Query: 136 VSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAV 195
+ +HP+++LL Y L+ N+ + AW + DS L L+++ + IAVAV
Sbjct: 155 LQVEHPYQFLLKYAKQLKGDKNKIQ----KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 210
Query: 196 LYLALQVYGVEVPAEVEAEKP----WWQIYTMDTEI 227
+YLA ++ E+ + KP WW+ + D +
Sbjct: 211 MYLAGRLCKFEI--QEWTSKPMYRRWWEQFVQDVPV 244
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 94.4 bits (233), Expect = 7e-20
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 15/197 (7%)
Query: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
I AG+ L + + +AT ++H+FF + + ++AM+ I LA K+EE R RD+
Sbjct: 90 IQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDV 149
Query: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
INV + G+ PL LD + ++ +++ E +L+ L F V +HPHK ++ YL
Sbjct: 150 INVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYL 209
Query: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPA 209
L+ N+ + TAW + DS + +RFQ + IA A +YLA + + +P
Sbjct: 210 QVLECERNQ------TLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPT 263
Query: 210 EVEAEKPWWQIYTMDTE 226
+P W + TE
Sbjct: 264 -----RPHWFLLFGTTE 275
>gi|88758580 cyclin L2 isoform A [Homo sapiens]
Length = 520
Score = 93.2 bits (230), Expect = 2e-19
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 15/197 (7%)
Query: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
I AG+ L + + +AT ++ +FF + + ++M+ ++LA K+EE R RD+
Sbjct: 85 IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144
Query: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
INV +R + PL LD + L++ I++ E +L+ L F V +HPHK ++ YL
Sbjct: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204
Query: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPA 209
L+ N+H Q T+W + DS + +RFQ + IA A +YLA + + +P
Sbjct: 205 QVLECERNQHLVQ------TSWNYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLP- 257
Query: 210 EVEAEKPWWQIYTMDTE 226
+P W + TE
Sbjct: 258 ----NRPHWFLLFGATE 270
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 75.5 bits (184), Expect = 4e-14
Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 15/195 (7%)
Query: 29 RVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHL 88
+ A I E G +L + + I TA H+F+ + ++ +I+ ++++LA KVEEQ
Sbjct: 39 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQAR 98
Query: 89 RTRDIINVSNRYFNPSGEPLELDSR---FWELRDSIVQCELLMLRVLRFQVSFQHPHKYL 145
+ +I V++ +P EPL LD++ + + +V E +ML+ L F+++ +HPH +
Sbjct: 99 KLEHVIKVAHACLHPL-EPL-LDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDV 156
Query: 146 LHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYH-GALCLRFQAQHIAVAVLYLALQVYG 204
+ ++ +A T++ + +S H CL+++ IA ++LA +
Sbjct: 157 VKCTQLVR--------ASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 208
Query: 205 VEVPAEVEAEKPWWQ 219
E+P + K WW+
Sbjct: 209 WEIPVSTDG-KHWWE 222
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 75.5 bits (184), Expect = 4e-14
Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 15/195 (7%)
Query: 29 RVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHL 88
+ A I E G +L + + I TA H+F+ + ++ +I+ ++++LA KVEEQ
Sbjct: 39 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQAR 98
Query: 89 RTRDIINVSNRYFNPSGEPLELDSR---FWELRDSIVQCELLMLRVLRFQVSFQHPHKYL 145
+ +I V++ +P EPL LD++ + + +V E +ML+ L F+++ +HPH +
Sbjct: 99 KLEHVIKVAHACLHPL-EPL-LDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDV 156
Query: 146 LHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYH-GALCLRFQAQHIAVAVLYLALQVYG 204
+ ++ +A T++ + +S H CL+++ IA ++LA +
Sbjct: 157 VKCTQLVR--------ASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 208
Query: 205 VEVPAEVEAEKPWWQ 219
E+P + K WW+
Sbjct: 209 WEIPVSTDG-KHWWE 222
>gi|221554516 cyclin L2 isoform C [Homo sapiens]
Length = 236
Score = 73.2 bits (178), Expect = 2e-13
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
I AG+ L + + +AT ++ +FF + + ++M+ ++LA K+EE R RD+
Sbjct: 85 IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144
Query: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
INV +R + PL LD + L++ I++ E +L+ L F V +HPHK ++ YL
Sbjct: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204
Query: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSY 178
L+ N+H Q + VA L DS+
Sbjct: 205 QVLECERNQHLVQTSWVASEDPLLKWDSW 233
>gi|221554518 cyclin L2 isoform D [Homo sapiens]
Length = 227
Score = 72.8 bits (177), Expect = 2e-13
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 4/138 (2%)
Query: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
I AG+ L + + +AT ++ +FF + + ++M+ ++LA K+EE R RD+
Sbjct: 85 IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144
Query: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
INV +R + PL LD + L++ I++ E +L+ L F V +HPHK ++ YL
Sbjct: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204
Query: 150 VSLQNWLNRHSWQRTPVA 167
L+ N+H Q + VA
Sbjct: 205 QVLECERNQHLVQTSWVA 222
>gi|88758578 cyclin L2 isoform B [Homo sapiens]
Length = 226
Score = 72.8 bits (177), Expect = 2e-13
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 4/138 (2%)
Query: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
I AG+ L + + +AT ++ +FF + + ++M+ ++LA K+EE R RD+
Sbjct: 85 IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144
Query: 94 INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
INV +R + PL LD + L++ I++ E +L+ L F V +HPHK ++ YL
Sbjct: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204
Query: 150 VSLQNWLNRHSWQRTPVA 167
L+ N+H Q + VA
Sbjct: 205 QVLECERNQHLVQTSWVA 222
>gi|17978466 cyclin T1 [Homo sapiens]
Length = 726
Score = 62.8 bits (151), Expect = 2e-10
Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 11/202 (5%)
Query: 20 PAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYL 79
P E + A + + G +L + + I TA H+F+ + + +A ++++L
Sbjct: 31 PDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFL 90
Query: 80 AGKVEEQHLRTRDIINVSNRYFNPSGE-PLELDSRFWELRDSIVQCELLMLRVLRFQVSF 138
A KVEEQ + +I V++ +P P + + +V E ++L+ L F+++
Sbjct: 91 AAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTI 150
Query: 139 QHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYH-GALCLRFQAQHIAVAVLY 197
HPH +++ ++ +A T++ + +S H L++ +A ++
Sbjct: 151 DHPHTHVVKCTQLVR--------ASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIH 202
Query: 198 LALQVYGVEVPAEVEAEKPWWQ 219
LA + E+P + K WW+
Sbjct: 203 LACKWSNWEIPVSTDG-KHWWE 223
>gi|61676091 cyclin C isoform a [Homo sapiens]
Length = 283
Score = 62.8 bits (151), Expect = 2e-10
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 34 IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
I G L +R IATA + +F+ +L + DP L+A + ++LA KVEE + +
Sbjct: 48 IQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTR 107
Query: 94 INVSNRYFNPSGEPLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQ 153
+ + + F + I++CE +L ++ + HP++ LL Y+ +
Sbjct: 108 LIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM- 166
Query: 154 NWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQV 202
Q + AW ++ D+Y LCL + IA+A L++A V
Sbjct: 167 -------GQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVV 208
>gi|4502623 cyclin H [Homo sapiens]
Length = 323
Score = 43.9 bits (102), Expect = 1e-04
Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 48 IATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEP 107
+ TAC + +F+ ++ Y P +I ++ +LA KV+E ++ + V N +P G+
Sbjct: 80 VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQF--VGNLRESPLGQE 137
Query: 108 LELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQ 153
L + I++ ELL+++ L F + +P++ +L+ L+
Sbjct: 138 KAL--------EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175
>gi|61676093 cyclin C isoform b [Homo sapiens]
Length = 198
Score = 41.6 bits (96), Expect = 6e-04
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 72 IAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDSIVQCELLMLRV 131
+A + ++LA KVEE + + + + + F + I++CE +L +
Sbjct: 1 MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL 60
Query: 132 LRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHI 191
+ + HP++ LL Y+ + Q + AW ++ D+Y LCL + I
Sbjct: 61 MDCCLIVYHPYRPLLQYVQDMG--------QEDMLLPLAWRIVNDTYRTDLCLLYPPFMI 112
Query: 192 AVAVLYLALQV 202
A+A L++A V
Sbjct: 113 ALACLHVACVV 123
>gi|91208437 GEM interacting protein [Homo sapiens]
Length = 970
Score = 31.2 bits (69), Expect = 0.77
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 6 GGGGGPAARGPEGQPAPEARV--HFRVARFIMEAGVKLGMRSIPIATAC 52
G G PAA PEG P + HF + + KL ++P AT C
Sbjct: 910 GRGPSPAAASPEGSPLRRTPLPKHFEITQETARLLSKLDSEAVPRATCC 958
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 6 GGGGGPAARGPEGQPAPEAR 25
GGGGGP+ GP G+P+ +R
Sbjct: 110 GGGGGPSLPGPAGRPSGRSR 129
>gi|5803133 RAB32, member RAS oncogene family [Homo sapiens]
Length = 225
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 6 GGGGGPAARGPEGQPAPEARVHFRVARFIMEAGV 39
GGG G G PAPE R H I E GV
Sbjct: 3 GGGAGDPGLGAAAAPAPETREHLFKVLVIGELGV 36
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 6 GGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIA 49
GGGGG A GP G P + + R R + G S P++
Sbjct: 358 GGGGGQGAEGPPGTPRRTGKGNRRKKRAAGRGALSRGGDSAPLS 401
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 28.9 bits (63), Expect = 3.8
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 4 PEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATAC-TIYHKFFCET 62
P GGGG + + AP + + A+ + +KLG + A T+Y F +T
Sbjct: 232 PGAGGGGSSVGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQT 291
Query: 63 NLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELD 111
+ ++ ++ ++ + + L D + SG P LD
Sbjct: 292 TICRFEALQLSFKNMCKLKPLLNKWLEETD---------SSSGSPTNLD 331
>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 632
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 APEGGGGGPAARGPEGQPAPEARVHFRVARFIME 36
AP+ G G R P PAP + H R +F ++
Sbjct: 164 APDSAGEGAPGREPPASPAPPGKEHPRDLKFSID 197
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 APEGGGGGPAARGPEGQPAPEARVHFRVARFIME 36
AP+ G G R P PAP + H R +F ++
Sbjct: 459 APDSAGEGAPGREPPASPAPPGKEHPRDLKFSID 492
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 APEGGGGGPAARGPEGQPAPEARVHFRVARFIME 36
AP+ G G R P PAP + H R +F ++
Sbjct: 522 APDSAGEGAPGREPPASPAPPGKEHPRDLKFSID 555
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 APEGGGGGPAARGPEGQPAPEARVHFRVARFIME 36
AP+ G G R P PAP + H R +F ++
Sbjct: 226 APDSAGEGAPGREPPASPAPPGKEHPRDLKFSID 259
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 6 GGGGGPAARGPEGQPAPEAR 25
G G P A+GPEG P P R
Sbjct: 1510 GVAGRPGAKGPEGPPGPTGR 1529
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 4 PEGGGGGPAARGPEGQPAPEARVHFRVA-RFIMEAGVKLGMRSIPIATACTIYH 56
P+G G P GP G P P ++ A + ++E+ L M S I H
Sbjct: 1460 PQGPRGQPGPPGPPGAPGPRKQMDINAAIQALIESNTALQMESYQNTEVTLIDH 1513
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 4 PEGGGGGPAARGPEGQPA 21
P GG GGPA GP G PA
Sbjct: 42 PGGGYGGPAPGGPYGPPA 59
>gi|38505159 transcription factor-like 5 protein [Homo sapiens]
Length = 500
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 3 APEGGGGGPAARGPEGQPAPEARVHFRV 30
A EG G AA GP+G P A+ RV
Sbjct: 158 AKEGAGAAAAAAGPDGAPEARAKPAVRV 185
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 2 EAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGV 39
E +GGGGG A G E + A + F+V +++ +
Sbjct: 534 EPADGGGGGAAGPGAEEEQLDTAEIAFQVKEQLLKHNI 571
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,344,447
Number of Sequences: 37866
Number of extensions: 409838
Number of successful extensions: 3803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3710
Number of HSP's gapped (non-prelim): 76
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.