Guide to the Human Genome
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Name: CCNL2 Sequence: fasta or formatted (227aa) NCBI GI: 221554518
Description:

cyclin L2 isoform D

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [236aa] cyclin L2 isoform C
alt prot [226aa] cyclin L2 isoform B
alt prot [520aa] cyclin L2 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         26           7
 C cysteine            2.2          5           1
 D aspartate           4.4         10           2
 E glutamate           4.8         11           2
 F phenylalanine       3.1          7           2
 G glycine             7.0         16           2
 H histidine           3.5          8           1
 I isoleucine          5.3         12           2
 K lysine              5.3         12           3
 L leucine            11.5         26           3
 M methionine          2.6          6           1
 N asparagine          2.2          5           1
 P proline             4.4         10           1
 Q glutamine           4.8         11           1
 R arginine            6.2         14           2
 S serine              6.2         14           2
 T threonine           4.0          9           1
 V valine              8.8         20           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin L2 isoform D 
CCNL2                 0.993   cyclin L2 isoform B 
CCNL2                 0.986   cyclin L2 isoform C 
CCNL2                 0.972   cyclin L2 isoform A 
CCNL1                 0.693   cyclin L1 
CCNT2                 0.125   cyclin T2 isoform b 
CCNT2                 0.125   cyclin T2 isoform a 
CCNK                  0.125   cyclin K isoform 1 
CCNK                  0.125   cyclin K isoform 2 
CCNT1                 0.121   cyclin T1 
FAM58A                0.113   family with sequence similarity 58, member A isofor...
FAM58A                0.113   family with sequence similarity 58, member A isofor...
FAM58B                0.092   family with sequence similarity 58 member B 
CCNC                  0.052   cyclin C isoform a 
PHOX2B                0.033   paired-like homeobox 2b 
EVX2                  0.031   even-skipped homeobox 2 
HECA                  0.028   headcase 
ZSWIM6                0.026   zinc finger, SWIM-type containing 6 
HOXA13                0.024   homeobox A13 
INTS3                 0.024   integrator complex subunit 3 
MAF                   0.024   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.024   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
ZIC2                  0.024   zinc finger protein of the cerebellum 2 
VAX1                  0.021   ventral anterior homeobox 1 isoform a 
MAZ                   0.019   MYC-associated zinc finger protein isoform 1 
JHDM1D                0.019   jumonji C domain containing histone demethylase 1 ho...
EN1                   0.019   engrailed homeobox 1 
KAT2A                 0.019   general control of amino acid synthesis 5-like 2 [H...
FBXO45                0.019   F-box protein 45 
SIX5                  0.019   sine oculis homeobox homolog 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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