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Search of human proteins with 195539375
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195539375 PARK2 co-regulated-like isoform 2 [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195539375 PARK2 co-regulated-like isoform 2 [Homo sapiens] 247 1e-66
gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens] 140 2e-34
gi|28559039 mediator complex subunit 1 [Homo sapiens] 31 0.21
gi|112821690 G protein-regulated inducer of neurite outgrowth 3 ... 31 0.21
gi|18450371 protein tyrosine phosphatase, receptor type, A isofo... 31 0.27
gi|4506303 protein tyrosine phosphatase, receptor type, A isofor... 31 0.27
gi|18450369 protein tyrosine phosphatase, receptor type, A isofo... 31 0.27
gi|60097902 filaggrin [Homo sapiens] 30 0.60
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 30 0.60
gi|117938251 BCL2-associated transcription factor 1 isoform 2 [H... 30 0.60
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 30 0.60
gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo sa... 29 1.0
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 29 1.0
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 29 1.0
gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens] 29 1.0
gi|93102379 low density lipoprotein-related protein 1B precursor... 28 1.8
gi|227497884 brain-enriched guanylate kinase-associated protein ... 28 1.8
gi|13124765 brain-enriched guanylate kinase-associated protein [... 28 1.8
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 28 1.8
gi|24431975 hypothetical protein LOC26148 [Homo sapiens] 28 1.8
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 28 1.8
gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens] 28 2.3
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 27 3.0
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 27 3.0
gi|23503285 leucine rich repeat containing 34 [Homo sapiens] 27 3.0
gi|42733592 hypothetical protein LOC399693 [Homo sapiens] 27 3.0
gi|83367077 mucin 16 [Homo sapiens] 27 3.9
gi|114842396 ankyrin-repeat and fibronectin type III domain cont... 27 3.9
gi|82880648 MLK-related kinase isoform 1 [Homo sapiens] 27 3.9
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 27 3.9
>gi|195539375 PARK2 co-regulated-like isoform 2 [Homo sapiens]
Length = 123
Score = 247 bits (631), Expect = 1e-66
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD 60
MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD
Sbjct: 1 MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD 60
Query: 61 KLNPKTINPVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCS 120
KLNPKTINPVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCS
Sbjct: 61 KLNPKTINPVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCS 120
Query: 121 ICC 123
ICC
Sbjct: 121 ICC 123
>gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]
Length = 221
Score = 140 bits (353), Expect = 2e-34
Identities = 70/76 (92%), Positives = 70/76 (92%)
Query: 1 MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD 60
MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD
Sbjct: 1 MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD 60
Query: 61 KLNPKTINPVHSDDEV 76
KLNPKTINP V
Sbjct: 61 KLNPKTINPFGEQSRV 76
Score = 114 bits (285), Expect = 2e-26
Identities = 62/81 (76%), Positives = 63/81 (77%), Gaps = 3/81 (3%)
Query: 43 LSTSSPESARKLHPRPSDKLNPKTINPVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHL 102
L +PE A L PR L VHSDDEVFERGLNALVQLSVVVGPSLNDHLKHL
Sbjct: 144 LVKGAPEKAIPLLPRLIPVLKAAL---VHSDDEVFERGLNALVQLSVVVGPSLNDHLKHL 200
Query: 103 LTSGSLSIIKSKIPTYCSICC 123
LTSGSLSIIKSKIPTYCSICC
Sbjct: 201 LTSGSLSIIKSKIPTYCSICC 221
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 31.2 bits (69), Expect = 0.21
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 3 KSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQG-------SKSSLSTSSPESARKLH 55
KSEGS ++L + + Q +S S+Q K+ + G +K LS+ S + K
Sbjct: 1118 KSEGSSSSKLSSSMYSS--QGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQ 1175
Query: 56 PRPSDKLNPK----TINPVHS 72
+PS +NP I+P HS
Sbjct: 1176 GKPSSLMNPSLSKPNISPSHS 1196
>gi|112821690 G protein-regulated inducer of neurite outgrowth 3
[Homo sapiens]
Length = 776
Score = 31.2 bits (69), Expect = 0.21
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 3 KSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLST-----SSPESARKLHPR 57
KS+ SGGT+ T + ++ ST ++R + SL + SSP S +K P
Sbjct: 567 KSQESGGTESAANPTPSPIRKNQESTLEENRQTKTATSLSLPSDPMGDSSPGSGKKT-PS 625
Query: 58 PSDKLNPKTINPVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSK 114
S K +P+ P + + E+ LN + + VG + D K L L + +SK
Sbjct: 626 RSVKASPR--RPSRVSEFLKEQKLN-VTAAAAQVGLTPGDKKKQLGADSKLQLKQSK 679
>gi|18450371 protein tyrosine phosphatase, receptor type, A isoform
2 precursor [Homo sapiens]
Length = 793
Score = 30.8 bits (68), Expect = 0.27
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 20 YDQRTSSSTQLKHRNA----VQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPVHSDDE 75
Y Q S S + N V+ L SP + RK P P DKL + + D++
Sbjct: 171 YKQAGSHSNSFRLSNGRTEDVEPQSVPLLARSPSTNRKYPPLPVDKLEEEINRRMADDNK 230
Query: 76 VFERGLNAL 84
+F NAL
Sbjct: 231 LFREEFNAL 239
>gi|4506303 protein tyrosine phosphatase, receptor type, A isoform 1
precursor [Homo sapiens]
Length = 802
Score = 30.8 bits (68), Expect = 0.27
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 20 YDQRTSSSTQLKHRNA----VQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPVHSDDE 75
Y Q S S + N V+ L SP + RK P P DKL + + D++
Sbjct: 180 YKQAGSHSNSFRLSNGRTEDVEPQSVPLLARSPSTNRKYPPLPVDKLEEEINRRMADDNK 239
Query: 76 VFERGLNAL 84
+F NAL
Sbjct: 240 LFREEFNAL 248
>gi|18450369 protein tyrosine phosphatase, receptor type, A isoform
2 precursor [Homo sapiens]
Length = 793
Score = 30.8 bits (68), Expect = 0.27
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 20 YDQRTSSSTQLKHRNA----VQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPVHSDDE 75
Y Q S S + N V+ L SP + RK P P DKL + + D++
Sbjct: 171 YKQAGSHSNSFRLSNGRTEDVEPQSVPLLARSPSTNRKYPPLPVDKLEEEINRRMADDNK 230
Query: 76 VFERGLNAL 84
+F NAL
Sbjct: 231 LFREEFNAL 239
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 29.6 bits (65), Expect = 0.60
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 14 NRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPVHSD 73
N+ N + R S+ L+ RN +G+K S S E+ K H S+K K +P H +
Sbjct: 113 NKQEENKENRKRPSS-LERRNNRKGNKGR-SKSPRETGGKRHESSSEKKERKGYSPTHRE 170
Query: 74 DE 75
+E
Sbjct: 171 EE 172
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 29.6 bits (65), Expect = 0.60
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S S G++ + + +Y + S KH+ S+SS S++SP S + S K
Sbjct: 541 SRESSGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKER 600
Query: 64 PKTINPVHSDDE 75
+ H E
Sbjct: 601 EEEFKTHHEMKE 612
>gi|117938251 BCL2-associated transcription factor 1 isoform 2 [Homo
sapiens]
Length = 869
Score = 29.6 bits (65), Expect = 0.60
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S S G++ + + +Y + S KH+ S+SS S++SP S + S K
Sbjct: 712 SRESSGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKER 771
Query: 64 PKTINPVHSDDE 75
+ H E
Sbjct: 772 EEEFKTHHEMKE 783
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 29.6 bits (65), Expect = 0.60
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S S G++ + + +Y + S KH+ S+SS S++SP S + S K
Sbjct: 714 SRESSGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKER 773
Query: 64 PKTINPVHSDDE 75
+ H E
Sbjct: 774 EEEFKTHHEMKE 785
>gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo
sapiens]
Length = 596
Score = 28.9 bits (63), Expect = 1.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 46 SSPESA-RKLHPRPSDKLNPKTINPVHSDDEVFERGLNALVQL 87
SSPESA +LHP P DK + + P + + G N++ L
Sbjct: 140 SSPESASHQLHPAPPDKPKEQELKPGLCSGALSDSGRNSMSSL 182
>gi|57222563 colonic and hepatic tumor over-expressed protein
isoform b [Homo sapiens]
Length = 1972
Score = 28.9 bits (63), Expect = 1.0
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 72 SDDEVFERGLNALVQLSVVVGPSLNDHLKHL 102
S+ + ++ LN L QL+V +GP++ H+K+L
Sbjct: 912 SNKILVQQTLNILQQLAVAMGPNIKQHVKNL 942
>gi|57164942 colonic and hepatic tumor over-expressed protein
isoform a [Homo sapiens]
Length = 2032
Score = 28.9 bits (63), Expect = 1.0
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 72 SDDEVFERGLNALVQLSVVVGPSLNDHLKHL 102
S+ + ++ LN L QL+V +GP++ H+K+L
Sbjct: 912 SNKILVQQTLNILQQLAVAMGPNIKQHVKNL 942
>gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens]
Length = 2354
Score = 28.9 bits (63), Expect = 1.0
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 35 AVQGSKSSLSTSSPESA-RKLHPRPSDKLNPKTINPVHSDDEV 76
+VQ S+SSLS+ SP S H P + L+ + ++ D EV
Sbjct: 698 SVQSSRSSLSSDSPASLYHSAHDEPQEALDEVNLKELNIDMEV 740
>gi|93102379 low density lipoprotein-related protein 1B precursor
[Homo sapiens]
Length = 4599
Score = 28.1 bits (61), Expect = 1.8
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 2 QKSEGSGGTQLKNRATGNYDQRTSSSTQL----------KHRNAVQGSKSSLSTSSPESA 51
+ +GS QL N TS +T+ K+R + QG +S L S E
Sbjct: 1830 EAQQGSNSCQLNNGGCSQLCLPTSETTRTCMCTVGYYLQKNRMSCQGIESFLMYSVHEGI 1889
Query: 52 RKLHPRPSDKLN 63
R + PSDK++
Sbjct: 1890 RGIPLEPSDKMD 1901
>gi|227497884 brain-enriched guanylate kinase-associated protein
[Homo sapiens]
Length = 593
Score = 28.1 bits (61), Expect = 1.8
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
SEG G +L + G T+SS + + QGS+ SL SS E++ ++H P+ +L+
Sbjct: 516 SEGGDGDRLGVQLCG-----TASSPEPE-----QGSRDSLEPSSMEASPEMH--PAARLS 563
Query: 64 PKTINP 69
P+ P
Sbjct: 564 PQQAFP 569
>gi|13124765 brain-enriched guanylate kinase-associated protein
[Homo sapiens]
Length = 593
Score = 28.1 bits (61), Expect = 1.8
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
SEG G +L + G T+SS + + QGS+ SL SS E++ ++H P+ +L+
Sbjct: 516 SEGGDGDRLGVQLCG-----TASSPEPE-----QGSRDSLEPSSMEASPEMH--PAARLS 563
Query: 64 PKTINP 69
P+ P
Sbjct: 564 PQQAFP 569
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 6 GSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPR---PSDKL 62
GSGG++L N G + S +HR A + S S L P+ P+
Sbjct: 716 GSGGSELSNGEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDS-NLLGSLSPKTGLPATSA 774
Query: 63 NPKTINPVHSDDEV---FERGLNALVQLSVVVGP 93
+ + HSD V +G ++Q S+V GP
Sbjct: 775 MDEGLTSGHSDWSVGSEESKGYQEVIQ-SIVQGP 807
>gi|24431975 hypothetical protein LOC26148 [Homo sapiens]
Length = 1247
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S GSG ++ + TSS+ L+H +++ +S TS E+A+ P +
Sbjct: 707 SSGSGDAARAPKSVPRPKRLTSSTYNLRHAHSLGSLDASKVTSEKEAAQVNPIMPKENGA 766
Query: 64 PKTINPVHSDD 74
++ +P+ DD
Sbjct: 767 SESGDPLDEDD 777
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 28.1 bits (61), Expect = 1.8
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 31 KHRNAVQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPVHSDDEVFERGLNALVQLSVV 90
+H+ G + SL + A+++ P +K +P T V S D V + A+ ++S
Sbjct: 2111 EHKPGPIGKERSLKNRKVKDAQQVEPEGQEKPSPAT---VRSTDPVTTKETKAVSEMSTE 2167
Query: 91 VGPSLN 96
+G ++
Sbjct: 2168 IGTMIS 2173
>gi|38202205 zinc finger, FYVE domain containing 26 [Homo sapiens]
Length = 2539
Score = 27.7 bits (60), Expect = 2.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 10 TQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLNPKTINP 69
+Q R G+ S+S++L + +GS S++S + E +LHP P L P +P
Sbjct: 775 SQADGRDRGSNPSLESTSSELSTSTS-EGSLSAMSGRN-ELHSRLHPHPQSSLIPMMFSP 832
Query: 70 VHS 72
S
Sbjct: 833 PES 835
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 27.3 bits (59), Expect = 3.0
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S S G++ + + +Y + S KH+ S SS S++SP S + S K
Sbjct: 712 SRESRGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSLSSSSSASPSSPSSREEKESKKER 771
Query: 64 PKTINPVHSDDE 75
+ H E
Sbjct: 772 EEEFKTHHEMKE 783
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 27.3 bits (59), Expect = 3.0
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S S G++ + + +Y + S KH+ S SS S++SP S + S K
Sbjct: 712 SRESRGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSLSSSSSASPSSPSSREEKESKKER 771
Query: 64 PKTINPVHSDDE 75
+ H E
Sbjct: 772 EEEFKTHHEMKE 783
>gi|23503285 leucine rich repeat containing 34 [Homo sapiens]
Length = 419
Score = 27.3 bits (59), Expect = 3.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 38 GSKSSLSTSSPESARKLH-----PRPSDKLNPKTINPVHSDDEVFERGLNALVQLSV 89
G+ ++ SPES + H S K+NP ++ + DE ++GL A + L++
Sbjct: 26 GAALAVQRESPESGLQKHYSNLCMEKSQKINPFILHILQEVDEEIKKGLAAGITLNI 82
>gi|42733592 hypothetical protein LOC399693 [Homo sapiens]
Length = 953
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 37 QGSKSSLSTSSPESARKLH 55
QGS +SL TS+P SA +LH
Sbjct: 166 QGSCASLGTSAPSSASRLH 184
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.9 bits (58), Expect = 3.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 6 GSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLH 55
GSG T + + TG T+S T+ N + + SLS S PE+ L+
Sbjct: 3253 GSGSTSISHLPTG-----TTSPTKSPTENMLATERVSLSPSPPEAWTNLY 3297
>gi|114842396 ankyrin-repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 763
Score = 26.9 bits (58), Expect = 3.9
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MQKSEGSGGTQLKNRATG--NYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRP 58
+ +S G T + A+ N++ R + Q+++ + Q K S + SSP +A++L+
Sbjct: 45 LNESTGQLPTTCSSAASNSINWNCRVKMTQQMQNLHLCQSKKHS-APSSPNAAKRLYRNL 103
Query: 59 SDKL 62
S+KL
Sbjct: 104 SEKL 107
>gi|82880648 MLK-related kinase isoform 1 [Homo sapiens]
Length = 800
Score = 26.9 bits (58), Expect = 3.9
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 6 GSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLNPK 65
G G L + G Y ++ ST + R + + S S +P + P D P
Sbjct: 682 GRGSISLNSSPRGRYSGKSQHSTPSRGRYPGKFYRVSQSALNPHQSPDFKRSPRDLHQPN 741
Query: 66 TI--NPVHSDDE 75
TI P+H + +
Sbjct: 742 TIPGMPLHPETD 753
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 26.9 bits (58), Expect = 3.9
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 2 QKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDK 61
+K S + + ++ + +SSS+ ++ S SS S+SSP A +P +
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPA-----KPGPQ 2657
Query: 62 LNPKTINP 69
PK +P
Sbjct: 2658 ALPKPASP 2665
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.125 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,862,295
Number of Sequences: 37866
Number of extensions: 192706
Number of successful extensions: 747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 59
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.