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Search of human proteins with 194097411
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194097411 transmembrane protein 119 [Homo sapiens]
(283 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194097411 transmembrane protein 119 [Homo sapiens] 559 e-159
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 42 5e-04
gi|222537747 hypothetical protein LOC342979 [Homo sapiens] 41 0.001
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 41 0.001
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 38 0.009
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 38 0.011
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 38 0.011
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 38 0.011
gi|5730027 KH domain containing, RNA binding, signal transductio... 37 0.026
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 36 0.033
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 36 0.044
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 36 0.044
gi|194097398 protein tyrosine phosphatase, receptor type, G prec... 35 0.074
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 35 0.074
gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens] 35 0.074
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 35 0.097
gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B... 34 0.17
gi|30795231 brain abundant, membrane attached signal protein 1 [... 33 0.22
gi|110347463 human immunodeficiency virus type I enhancer bindin... 33 0.22
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 33 0.28
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 33 0.28
gi|21536411 bridging integrator 1 isoform 6 [Homo sapiens] 33 0.28
gi|21536407 bridging integrator 1 isoform 4 [Homo sapiens] 33 0.28
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 33 0.28
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof... 33 0.28
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof... 33 0.28
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof... 33 0.28
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof... 33 0.28
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof... 33 0.28
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 33 0.28
>gi|194097411 transmembrane protein 119 [Homo sapiens]
Length = 283
Score = 559 bits (1440), Expect = e-159
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MVSAAAPSLLILLLLLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTP 60
MVSAAAPSLLILLLLLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTP
Sbjct: 1 MVSAAAPSLLILLLLLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTP 60
Query: 61 ALSPTSMGPQPITLGGPSPPTNFLDGIVDFFRQYVMLIAVVGSLAFLLMFIVCAAVITRQ 120
ALSPTSMGPQPITLGGPSPPTNFLDGIVDFFRQYVMLIAVVGSLAFLLMFIVCAAVITRQ
Sbjct: 61 ALSPTSMGPQPITLGGPSPPTNFLDGIVDFFRQYVMLIAVVGSLAFLLMFIVCAAVITRQ 120
Query: 121 KQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAAT 180
KQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAAT
Sbjct: 121 KQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAAT 180
Query: 181 QNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVL 240
QNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVL
Sbjct: 181 QNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVL 240
Query: 241 EGAVVAGEGQGELEGSLLLAQEAQGPVGPPESPCACSSVHPSV 283
EGAVVAGEGQGELEGSLLLAQEAQGPVGPPESPCACSSVHPSV
Sbjct: 241 EGAVVAGEGQGELEGSLLLAQEAQGPVGPPESPCACSSVHPSV 283
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 42.4 bits (98), Expect = 5e-04
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 201 EGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQGELEG 255
EG G EEE+G EG++E +G G E EE G EG GEG+GE EG
Sbjct: 873 EGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEG--EGEEEEGEGKGEEEG 925
Score = 41.2 bits (95), Expect = 0.001
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 192 GGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQG 251
G G+G EG G EEE+G +EG++E +G E +EE G +EG V EG+G
Sbjct: 977 GEGEGEEE-EGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEE---GEVEGEVEGEEGEG 1032
Query: 252 ELE 254
E E
Sbjct: 1033 EGE 1035
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 192 GGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVE-TPEAQEEPCSGVLEGAVVAGEGQ 250
G G+G EG G EEE +G EG++E +G G E + +EE G EG GEG+
Sbjct: 883 GEGEGEEEGEGEGEEEEGEG--EGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGE 940
Query: 251 GE 252
GE
Sbjct: 941 GE 942
Score = 38.9 bits (89), Expect = 0.005
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 194 GDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQGEL 253
G+G EG G EEE+G EG++E +G G +EE G E GEG+GE
Sbjct: 883 GEGEGEEEGEGEGEEEEGEGEGEEEGEGEG--------EEEEGEGKGEEEGEEGEGEGEE 934
Query: 254 E 254
E
Sbjct: 935 E 935
Score = 38.5 bits (88), Expect = 0.007
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 192 GGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQG 251
G G+G +G G EEE+G EG++E +G G E E + E G EG GEG+G
Sbjct: 937 GEGEGE---DGEGEGEEEEGEWEGEEE-EGEGEGEEEGEGEGEEGEG--EGEEEEGEGEG 990
Query: 252 ELE 254
E E
Sbjct: 991 EEE 993
Score = 38.5 bits (88), Expect = 0.007
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 192 GGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQG 251
G G+G EG EEE+G EG++E +G G E E + E G EG GE +G
Sbjct: 944 GEGEGEEE-EGEWEGEEEEGEGEGEEEGEGEG---EEGEGEGEEEEGEGEGEEEEGEEEG 999
Query: 252 ELEG 255
E EG
Sbjct: 1000 EEEG 1003
Score = 37.7 bits (86), Expect = 0.011
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 192 GGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQG 251
G +G + EG+G EEE+ EG++E +G G E E + E G +G EG+G
Sbjct: 812 GEVEGGEVEEGKGEREEEEEEGEGEEE-EGEG---EEEEGEGEEEEGEGKGEEEGEEGEG 867
Query: 252 ELEG 255
E EG
Sbjct: 868 EEEG 871
Score = 37.7 bits (86), Expect = 0.011
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 194 GDGARMVEGRGAEEEE----KGSQEGD------QEVQGHGVPVETPEAQEEPCSGVLEGA 243
G+G EG G EEE KG +EG+ +E +G G E E + E G EG
Sbjct: 900 GEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEG-EGEDGEGEGEEEEGEWEGE 958
Query: 244 VVAGEGQGELEGSLLLAQEAQGPVGPPE 271
GEG+GE EG E +G G E
Sbjct: 959 EEEGEGEGEEEG------EGEGEEGEGE 980
Score = 37.4 bits (85), Expect = 0.015
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 201 EGRGAEEEEKGSQEGDQEVQGHG---VPVETPEAQEEPCSGVL---EGAVVAGEGQGELE 254
EGRG E+EE G EG + +G G E E +EE G EG GEG+GE E
Sbjct: 802 EGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEE 861
Query: 255 G 255
G
Sbjct: 862 G 862
Score = 37.4 bits (85), Expect = 0.015
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 201 EGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQGELEG 255
EG G EE E+G EG++E +G G E +EE G EG GEG+GE EG
Sbjct: 864 EGEGEEEGEEGEGEGEEE-EGEG------EGEEE---GEGEGEEEEGEGEGEEEG 908
Score = 37.0 bits (84), Expect = 0.020
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 201 EGRGAEEEEKGSQEG----DQEVQGHGVPV-ETPEAQEEPCSGVLEGAVVAGEGQGELEG 255
EG G EEE +G +E ++E +G G E E +EE G EG GEG+GE EG
Sbjct: 832 EGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEG 891
Score = 34.3 bits (77), Expect = 0.13
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 195 DGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETP-EAQEEPCSGVLEGAVVAGEGQGEL 253
+G R E R A +EEKG +EGD QG G ET +E+ G +EG V EG+GE
Sbjct: 772 EGERKKEER-AGKEEKGEEEGD---QGEGEEEETEGRGEEKEEGGEVEGGEVE-EGKGER 826
Query: 254 E 254
E
Sbjct: 827 E 827
Score = 32.0 bits (71), Expect = 0.63
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 194 GDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQGE 252
G+G EG G EEEE+G EG EV+G E E + E G EG EG+GE
Sbjct: 1003 GEGEEEGEGEG-EEEEEGEVEG--EVEG-----EEGEGEGEEEEGEEEGEEREKEGEGE 1053
Score = 28.1 bits (61), Expect = 9.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 201 EGRGAEEEEKGSQEGDQ-EVQGHGVPVETPEAQEEPCSG 238
EG G EEE+G +EG++ E +G G +EE G
Sbjct: 1029 EGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEG 1067
>gi|222537747 hypothetical protein LOC342979 [Homo sapiens]
Length = 673
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/138 (29%), Positives = 51/138 (36%), Gaps = 40/138 (28%)
Query: 184 KSPTRAALGGGDGARMVEGRGAEEE---------------EKGSQEGDQ----EVQGHGV 224
K P A GG+ E RG EE E+GS+EG + E+ G
Sbjct: 501 KEPLEAERKGGEETLEAEKRGGEESLETEKTQGTEGDLNLEQGSREGSESQAEEMNEAGP 560
Query: 225 PVET----------PEAQEEPCSGVLEGAV---VAGEGQGELEGSLLLAQEAQGPVGPP- 270
P+E P+ QE+P + E V A EGQG L + L E P P
Sbjct: 561 PLEANTETRPEKEGPQPQEKPVGALEEEGVKPQTAAEGQGPLGDATPLLAETPAPEQPAE 620
Query: 271 -------ESPCACSSVHP 281
E P A S HP
Sbjct: 621 CQPLLQGEGPSANPSAHP 638
Score = 30.0 bits (66), Expect = 2.4
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 164 EALDSSRQLQADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHG 223
E L + R+ + L + ++ RA G + E RGAEEEE G ++ G
Sbjct: 441 EKLGTEREGGEEPLGIERKVEGHLRAEKEGDE-----EKRGAEEEEVEEPLGVEKKGGE- 494
Query: 224 VPVETPEAQEEPCSGVLEGAVVAGEGQGELEGSLLLAQEAQGPVG 268
E PEA +EP +G E + L ++ QG G
Sbjct: 495 ---EEPEATKEPLEAERKGGEETLEAEKRGGEESLETEKTQGTEG 536
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 40.8 bits (94), Expect = 0.001
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 158 PDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQ 217
P+S EA ++ ++Q + + G + EG A+E E +Q+ +
Sbjct: 1995 PESEDVEAPEAEGEMQ--------EAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEG 2046
Query: 218 EVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQGELEGSLLLAQEAQGPVGP 269
+ Q VE PEA+EE + EG V EG+ E + AQEA+G P
Sbjct: 2047 DAQPESDGVEAPEAEEE--AQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQP 2096
Score = 38.1 bits (87), Expect = 0.009
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 149 AFSEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPT---RAALGGGDGARMVEGRGA 205
A EV + ++ PE +++ + + ++ +++P A G A EG
Sbjct: 2067 AEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQ 2126
Query: 206 EEEE---KGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQGELEGSLLLAQE 262
E E EG+ + + GV + E + +P S +E E Q ELEG + A E
Sbjct: 2127 PESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEG--VEAPE 2184
Query: 263 AQGPVGPP----ESPCACSSVHPSV 283
A+G P E+P A P +
Sbjct: 2185 AEGEAQPESEGIEAPEAEGEAQPEL 2209
Score = 38.1 bits (87), Expect = 0.009
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 133 PKKKYVDQSDRAGGPRAFSE---VPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRA 189
P+ + VD + G + SE P+ +++ E +++ + + + ++ +++P
Sbjct: 2080 PESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAP-ETEGEAQPESEGIEAPEAE 2138
Query: 190 --ALGGGDGARMVEGRG-AEEEEKG--SQEGDQEVQGHGVPVETPEAQEE--PCSGVLEG 242
A +G + G A+ E +G +QE ++E Q VE PEA+ E P S +E
Sbjct: 2139 GEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEA 2198
Query: 243 AVVAGEGQGELEGSLLLAQEAQGPVGP 269
GE Q ELEG + A EA+ P
Sbjct: 2199 PEAEGEAQPELEG--VEAPEAEEEAQP 2223
Score = 35.8 bits (81), Expect = 0.044
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 140 QSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGGDGARM 199
+S+ P A EV P+S EA ++ ++ Q + T++++ A G+
Sbjct: 1886 ESEDVETPEAEWEVQ---PESEGAEAPEAEKEAQPE----TESVE----ALETEGEDEPE 1934
Query: 200 VEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEE--PCSGVLEGAVV-----AGEGQGE 252
EG A+E E+ +QE + + Q +E+ EA+EE P S +E V EG+ +
Sbjct: 1935 SEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQ 1994
Query: 253 LEGSLLLAQEAQGPVGPPE 271
E + A EA+G + E
Sbjct: 1995 PESEDVEAPEAEGEMQEAE 2013
Score = 32.0 bits (71), Expect = 0.63
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 140 QSDRAGGPRAFSEVPDRAPDSRPE----EALDSSRQLQA-DILAATQNLKSPTRAALGGG 194
+S+ P A E+ + +++PE EA S +A ++ TQ + + G
Sbjct: 1996 ESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGV 2055
Query: 195 DGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAGEGQGELE 254
+ E E E EG+ + V + E + +P S +E GE Q + E
Sbjct: 2056 EAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQ-KAE 2114
Query: 255 GSLLLAQEAQGPVGP 269
G + A E +G P
Sbjct: 2115 G--IEAPETEGEAQP 2127
Score = 31.6 bits (70), Expect = 0.82
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 152 EVPDRAPDSRPE----EALDSSRQLQADILAA-TQNLKSPTRAALGGGDGARMVEGRGAE 206
E P+ +++PE EA D+ + Q + Q + + L G VE AE
Sbjct: 2133 EAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEG------VEAPEAE 2186
Query: 207 EEEKGSQEGDQ--EVQGHGVP----VETPEAQEE--PCSGVLEGAVVAGEGQGELEG 255
E + EG + E +G P VE PEA+EE P +E GE Q E EG
Sbjct: 2187 GEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEG 2243
Score = 31.2 bits (69), Expect = 1.1
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 194 GDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEE--PCSGVLEGAVVAGEGQG 251
G+ EG A E E +QE + E Q VE PEA+ E P S +E E Q
Sbjct: 1842 GEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQP 1901
Query: 252 ELEGS 256
E EG+
Sbjct: 1902 ESEGA 1906
Score = 30.0 bits (66), Expect = 2.4
Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 9/149 (6%)
Query: 142 DRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGGDGARMVE 201
+R P+ D R + +S +++ A Q + + GG G+ +
Sbjct: 1753 NRDKDPKLGEAEGDAMAQEREGKTHNSETSAGSELGEAEQEGEGISERGETGGQGSGHED 1812
Query: 202 GRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLEGAVVAG-----EGQGELEGS 256
E G Q+ Q G+ E + +P S +E G EG+ + E
Sbjct: 1813 NLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESE 1872
Query: 257 LLLAQEAQGPVGPP----ESPCACSSVHP 281
+ A EA+G P E+P A V P
Sbjct: 1873 DVEAPEAEGEAQPESEDVETPEAEWEVQP 1901
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 38.1 bits (87), Expect = 0.009
Identities = 64/242 (26%), Positives = 97/242 (40%), Gaps = 26/242 (10%)
Query: 48 SASSPSLPPPWTPALSPTSMGPQPITLGGPSPPTNFLDGIVDFFRQYVMLIAVVGSLAFL 107
S +S +LP P + ++ +S G +P+ GP F ++L+ VVGS AFL
Sbjct: 358 SQASKTLPIPTSAPVALSSTG-KPVLDAGPV-----------LFWVILVLVVVVGSSAFL 405
Query: 108 LMFIVCAAVITRQKQKASAYYP--SSFPKKKYVDQSDRAGGP--RAFSEVPDRAPDSRPE 163
L A R +QK YP +S PK + VD R R+ + V + + R
Sbjct: 406 LCH--RRACRKRIRQKLHLCYPVQTSQPKLELVDSRPRRSSTQLRSGASVTEPVAEERGL 463
Query: 164 EALDSSRQLQADILAATQNLKSPTRAALGGGDGAR-MVEGRGAEEEEKGSQEGDQEVQGH 222
+ + A ++L + GG R + E R + E E ++
Sbjct: 464 MSQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD 523
Query: 223 GVPVETPEAQEEPCSGVLEGAVVAGEGQGELEGSLLLAQEAQGPVGPPESPC-ACSSVHP 281
V V T +A+ + EG +AG + ELE L P E P +CS V
Sbjct: 524 TVIVGTVKAE------LPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVML 577
Query: 282 SV 283
SV
Sbjct: 578 SV 579
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 37.7 bits (86), Expect = 0.011
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 151 SEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGG---DGARMVEGRGAEE 207
S+ P+R +S +EA + AT K P GGG + A+ ++
Sbjct: 776 SDEPERIEESGNDEARVEGQ--------ATDEKKEPKEPREGGGAIEEEAKEKTSEAPKK 827
Query: 208 EEKGSQEGDQEVQGH---GVPVETPEAQEEPCSGVLEGAVVAGEGQGE 252
+E+ +EGD E + G P+ PE ++EP G E E +GE
Sbjct: 828 DEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGE 875
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 37.7 bits (86), Expect = 0.011
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 151 SEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGG---DGARMVEGRGAEE 207
S+ P+R +S +EA + AT K P GGG + A+ ++
Sbjct: 745 SDEPERIEESGNDEARVEGQ--------ATDEKKEPKEPREGGGAIEEEAKEKTSEAPKK 796
Query: 208 EEKGSQEGDQEVQGH---GVPVETPEAQEEPCSGVLEGAVVAGEGQGE 252
+E+ +EGD E + G P+ PE ++EP G E E +GE
Sbjct: 797 DEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGE 844
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 37.7 bits (86), Expect = 0.011
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 151 SEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGG---DGARMVEGRGAEE 207
S+ P+R +S +EA + AT K P GGG + A+ ++
Sbjct: 776 SDEPERIEESGNDEARVEGQ--------ATDEKKEPKEPREGGGAIEEEAKEKTSEAPKK 827
Query: 208 EEKGSQEGDQEVQGH---GVPVETPEAQEEPCSGVLEGAVVAGEGQGE 252
+E+ +EGD E + G P+ PE ++EP G E E +GE
Sbjct: 828 DEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVVESEGE 875
>gi|5730027 KH domain containing, RNA binding, signal transduction
associated 1 [Homo sapiens]
Length = 443
Score = 36.6 bits (83), Expect = 0.026
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 19 SVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTPALSPTSMGPQPITLGGPS 78
SV T +R PL G G + G + +SP+ PP P L P++ GP T+GGP+
Sbjct: 29 SVRQTPSRQPPLPH---RSRGGGGGSRGGARASPATQPP--PLLPPSATGPDA-TVGGPA 82
Query: 79 P 79
P
Sbjct: 83 P 83
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 36.2 bits (82), Expect = 0.033
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 21 PATDARSVPLKATFLEDVAGSGE---AEGSSASSPSLPPPWTPALSPTSMGPQPITLGGP 77
PA AR+ L A G+G GSS + PS PPP P L PT P P P
Sbjct: 118 PAAAARAAALVAH-----PGAGSYPCGGGSSGAQPSAPPPPAPPLPPTPSPPPP----PP 168
Query: 78 SPPTNFLDG 86
PP L G
Sbjct: 169 PPPPPALSG 177
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 35.8 bits (81), Expect = 0.044
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 117 ITRQKQKASAYYPSSFPKKKYVDQ--------SDRAGGPRAFSEVPDRAPDSRPEEALDS 168
I+ + QK P + K+V++ +++ A + + + S EE ++
Sbjct: 432 ISSKIQKPKVEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEA 491
Query: 169 SRQLQADILAATQNL---KSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQG-HGV 224
+ + + + A + + KSP +A + E G +EEE+G +E ++E +G
Sbjct: 492 AEEKEEEPEAEEEEVAAKKSPVKAT-----APEVKEEEGEKEEEEGQEEEEEEDEGAKSD 546
Query: 225 PVETPEAQEEPCSGVLEGAVVAGEGQGELEGSLLLAQE 262
E +++E S EG GE + E EG A+E
Sbjct: 547 QAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKE 584
Score = 28.1 bits (61), Expect = 9.1
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 151 SEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEK 210
S V AP+ + EE + Q + + KS +A GG E G+ E+E+
Sbjct: 511 SPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSD-QAEEGGS------EKEGSSEKEE 563
Query: 211 G-SQEGDQEVQGHGVPVETPEAQEE 234
G +EG+ E + G E EA+EE
Sbjct: 564 GEQEEGETEAEAEG---EEAEAKEE 585
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 35.8 bits (81), Expect = 0.044
Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 117 ITRQKQKASAYYPSSFPKKKYVDQ--------SDRAGGPRAFSEVPDRAPDSRPEEALDS 168
I+ + QK P + K+V++ +++ A + + + S EE ++
Sbjct: 56 ISSKIQKPKVEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEA 115
Query: 169 SRQLQADILAATQNL---KSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQG-HGV 224
+ + + + A + + KSP +A + E G +EEE+G +E ++E +G
Sbjct: 116 AEEKEEEPEAEEEEVAAKKSPVKAT-----APEVKEEEGEKEEEEGQEEEEEEDEGAKSD 170
Query: 225 PVETPEAQEEPCSGVLEGAVVAGEGQGELEGSLLLAQE 262
E +++E S EG GE + E EG A+E
Sbjct: 171 QAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKE 208
Score = 28.1 bits (61), Expect = 9.1
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 151 SEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEK 210
S V AP+ + EE + Q + + KS +A GG E G+ E+E+
Sbjct: 135 SPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSD-QAEEGGS------EKEGSSEKEE 187
Query: 211 G-SQEGDQEVQGHGVPVETPEAQEE 234
G +EG+ E + G E EA+EE
Sbjct: 188 GEQEEGETEAEAEG---EEAEAKEE 209
>gi|194097398 protein tyrosine phosphatase, receptor type, G
precursor [Homo sapiens]
Length = 1445
Score = 35.0 bits (79), Expect = 0.074
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 146 GPRAFSEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGGDGARMVEGRGA 205
G S P +R A +S+Q +LA T+ L SP GD + +G G
Sbjct: 522 GGGGISSFPSTVWPTRLPTAASASKQAARPVLATTEALASPG----PDGDSSPTKDGEGT 577
Query: 206 EEEEKG----SQEGDQEVQGHGVPVETPEAQEEPCSGVLEGA 243
EE EK S++G++E + G +++++ SGV A
Sbjct: 578 EEGEKDEKSESEDGEREHEEDG----EKDSEKKEKSGVTHAA 615
>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
Length = 755
Score = 35.0 bits (79), Expect = 0.074
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 20 VPATDARSVPLKATFLEDVAGSGEAEGSS----ASSPSLPPPWTP----ALSPTSMGPQ 70
+P ++A + PL T E GE +G A P LPPP P A SP ++GP+
Sbjct: 30 IPGSEAGTDPLPVTATEASVPDGETDGQQSAPQADEPPLPPPPPPPGELARSPEAVGPE 88
>gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]
Length = 560
Score = 35.0 bits (79), Expect = 0.074
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 20 VPATDARSVPLKATFLEDVAGSGEAEGSS----ASSPSLPPPWTP----ALSPTSMGPQ 70
+P ++A + PL T E GE +G A P LPPP P A SP ++GP+
Sbjct: 30 IPGSEAGTDPLPVTATEASVPDGETDGQQSAPQADEPPLPPPPPPPGELARSPEAVGPE 88
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 34.7 bits (78), Expect = 0.097
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 3 SAAAPSLLILLLLLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTPAL 62
SAAA +LL +LLLL P AR++P A L E G P PW AL
Sbjct: 9 SAAARALLPPMLLLLLQPPPLLARALPPDAHHLH-----AERRG--------PQPWHAAL 55
Query: 63 SPTSMGPQPITLGGPSPPTN 82
P+S P P T P P ++
Sbjct: 56 -PSSPAPAPATQEAPRPASS 74
>gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 1 [Homo sapiens]
Length = 598
Score = 33.9 bits (76), Expect = 0.17
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 16/147 (10%)
Query: 47 SSASSPSLPPPWTPALSPTSMGPQPITLGGPSPPTNFLDGIVDFFRQYVMLIAVVGSLAF 106
S S S PPP P +P QP+T G P + R ++I ++ ++
Sbjct: 419 SGPSMGSSPPPTGPISTPAGPEDQPLTPTGSDPQSG-------LGRHLGVVIGILVAVVL 471
Query: 107 LLMFIVCAAVITRQKQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPEEAL 166
LL+ ++ +I R +++ + +S +K A GP E DR R A
Sbjct: 472 LLLLLLLLFLILRHRRQGKHW--TSTQRKADFQHPAGAVGP----EPTDRGLQWRSSPAA 525
Query: 167 DSSRQLQADILAATQ---NLKSPTRAA 190
D+ + + TQ ++ TRAA
Sbjct: 526 DAQEENLYAAVKDTQPEDGVEMDTRAA 552
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 33.5 bits (75), Expect = 0.22
Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 15/154 (9%)
Query: 133 PKKKYVDQSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALG 192
P + +++ G + + + AP + PE+ ++ A Q +P AA
Sbjct: 58 PDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAA-- 115
Query: 193 GGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVET-----PEAQE-----EPCSGVLEG 242
GG+ + E A E G++ + G P +T P AQE P S G
Sbjct: 116 GGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPG 175
Query: 243 AVVAGEGQGELEGSL---LLAQEAQGPVGPPESP 273
+ A E + +AQGP E P
Sbjct: 176 SSEAAPSSKETPAATEAPSSTPKAQGPAASAEEP 209
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 124 ASAYYPSSFPKKK--YVDQSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAATQ 181
+S YPS P + ++ + G RA +P + S P E+ +SS +L D A+
Sbjct: 1522 SSQDYPSVSPSSREPFLPSKEMLSGSRA--PLPGQK-SSGPSESKESSDELDIDETASDM 1578
Query: 182 NLKSPTRAALGGGDGARMVEGRG 204
++ SP ++L GDG EG+G
Sbjct: 1579 SM-SPQSSSLPAGDGQLEEEGKG 1600
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 119 RQKQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPE-----EALDSSRQLQ 173
R+K++ + S+ + D SD+ +S P R P R E + + + +
Sbjct: 189 RRKEREARREVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEE 247
Query: 174 ADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQE 233
D+L+ Q++ R + + G G+EEEE+ +E ++E E E +E
Sbjct: 248 RDLLSDLQDISDSERKT-SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 306
Query: 234 E 234
E
Sbjct: 307 E 307
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 119 RQKQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPE-----EALDSSRQLQ 173
R+K++ + S+ + D SD+ +S P R P R E + + + +
Sbjct: 199 RRKEREARREVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEE 257
Query: 174 ADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQE 233
D+L+ Q++ R + + G G+EEEE+ +E ++E E E +E
Sbjct: 258 RDLLSDLQDISDSERKT-SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 316
Query: 234 E 234
E
Sbjct: 317 E 317
>gi|21536411 bridging integrator 1 isoform 6 [Homo sapiens]
Length = 482
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 7/133 (5%)
Query: 129 PSSFPKKKYVDQSDRAGG-------PRAFSEVPDRAPDSRPEEALDSSRQLQADILAATQ 181
P++ P+ + + + AGG P++ S++ P P + S Q IL+ +
Sbjct: 273 PAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFE 332
Query: 182 NLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLE 241
+ P + A E G + G+QE + P E +
Sbjct: 333 DTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVN 392
Query: 242 GAVVAGEGQGELE 254
G V G G G L+
Sbjct: 393 GTVEGGSGAGRLD 405
>gi|21536407 bridging integrator 1 isoform 4 [Homo sapiens]
Length = 497
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 7/133 (5%)
Query: 129 PSSFPKKKYVDQSDRAGG-------PRAFSEVPDRAPDSRPEEALDSSRQLQADILAATQ 181
P++ P+ + + + AGG P++ S++ P P + S Q IL+ +
Sbjct: 288 PAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFE 347
Query: 182 NLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVLE 241
+ P + A E G + G+QE + P E +
Sbjct: 348 DTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVN 407
Query: 242 GAVVAGEGQGELE 254
G V G G G L+
Sbjct: 408 GTVEGGSGAGRLD 420
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
Length = 1790
Score = 33.1 bits (74), Expect = 0.28
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 151 SEVPDRAPDSRPEEALDSSRQLQADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEK 210
SE P +S E+ + S +++ A +N+ R + + + V+GR E +E+
Sbjct: 1633 SETPSEEEESSTPES-EESESTESEGEKARKNIVLARRRPMV--EEVKEVKGRKEEPQEE 1689
Query: 211 GSQ------EGDQEVQGHGVPVET---PEAQEEPCSGVLEGAVVAGEGQGELE---GSLL 258
+ E +E + PVE PEAQ+ P G E A V G + E E GS
Sbjct: 1690 QKEPKMEEEEHSEEEESGPAPVEESTDPEAQDIPEEGSAESASVEGGVESEEESESGSSS 1749
Query: 259 LAQEAQ--GPVG 268
+ E+Q GP G
Sbjct: 1750 SSSESQSGGPWG 1761
>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
9 [Homo sapiens]
Length = 771
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 119 RQKQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPE-----EALDSSRQLQ 173
R+K++ + S+ + D SD+ +S P R P R E + + + +
Sbjct: 190 RRKEREARREVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEE 248
Query: 174 ADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQE 233
D+L+ Q++ R + + G G+EEEE+ +E ++E E E +E
Sbjct: 249 RDLLSDLQDISDSERKT-SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 307
Query: 234 E 234
E
Sbjct: 308 E 308
>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
8 [Homo sapiens]
Length = 780
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 119 RQKQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPE-----EALDSSRQLQ 173
R+K++ + S+ + D SD+ +S P R P R E + + + +
Sbjct: 199 RRKEREARREVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEE 257
Query: 174 ADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQE 233
D+L+ Q++ R + + G G+EEEE+ +E ++E E E +E
Sbjct: 258 RDLLSDLQDISDSERKT-SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 316
Query: 234 E 234
E
Sbjct: 317 E 317
>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform
5 [Homo sapiens]
Length = 748
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 119 RQKQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPE-----EALDSSRQLQ 173
R+K++ + S+ + D SD+ +S P R P R E + + + +
Sbjct: 167 RRKEREARREVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEE 225
Query: 174 ADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQE 233
D+L+ Q++ R + + G G+EEEE+ +E ++E E E +E
Sbjct: 226 RDLLSDLQDISDSERKT-SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 284
Query: 234 E 234
E
Sbjct: 285 E 285
>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform
4 [Homo sapiens]
Length = 737
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 119 RQKQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPE-----EALDSSRQLQ 173
R+K++ + S+ + D SD+ +S P R P R E + + + +
Sbjct: 156 RRKEREARREVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEE 214
Query: 174 ADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQE 233
D+L+ Q++ R + + G G+EEEE+ +E ++E E E +E
Sbjct: 215 RDLLSDLQDISDSERKT-SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 273
Query: 234 E 234
E
Sbjct: 274 E 274
>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform
2 [Homo sapiens]
Length = 782
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 119 RQKQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPE-----EALDSSRQLQ 173
R+K++ + S+ + D SD+ +S P R P R E + + + +
Sbjct: 201 RRKEREARREVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEE 259
Query: 174 ADILAATQNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQE 233
D+L+ Q++ R + + G G+EEEE+ +E ++E E E +E
Sbjct: 260 RDLLSDLQDISDSERKT-SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 318
Query: 234 E 234
E
Sbjct: 319 E 319
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 33.1 bits (74), Expect = 0.28
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 14/174 (8%)
Query: 122 QKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPD-------RAPDSRPEEALDSSRQLQA 174
++A + S PK+ +++ A +E P R+P S A ++ ++Q+
Sbjct: 451 EEAPTEFQSPLPKETTAEEASAEIQLLAATEPPADETPAEARSPLSEETSAEEAHAEVQS 510
Query: 175 DILAATQNLKSPTR----AALGGGDGARMVEGRGAEEEEKGSQEGDQEVQG---HGVPVE 227
+ T ++ AA+ E + EE ++E EVQ GV +E
Sbjct: 511 PLAEETTAEEASAEIQLLAAIEAPADETPAEAQSPLSEETSAEEAPAEVQSPSAKGVSIE 570
Query: 228 TPEAQEEPCSGVLEGAVVAGEGQGELEGSLLLAQEAQGPVGPPESPCACSSVHP 281
+ +P SG A A L + A+EA V PP + A + V P
Sbjct: 571 EAPLELQPPSGEETTAEEASAAIQLLAATEASAEEAPAEVQPPPAEEAPAEVQP 624
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,365,136
Number of Sequences: 37866
Number of extensions: 759241
Number of successful extensions: 5395
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 4776
Number of HSP's gapped (non-prelim): 738
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.