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Search of human proteins with 190358543
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190358543 hypothetical protein LOC57654 [Homo sapiens]
(709 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190358543 hypothetical protein LOC57654 [Homo sapiens] 1435 0.0
gi|239748340 PREDICTED: hypothetical protein XP_002346633 [Homo ... 546 e-155
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 41 0.003
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 41 0.003
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 40 0.010
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 39 0.022
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 39 0.022
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 39 0.022
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 39 0.022
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 39 0.022
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 39 0.022
gi|33350928 disabled homolog 1 [Homo sapiens] 39 0.022
gi|23110966 light ear protein isoform a [Homo sapiens] 37 0.048
gi|23110970 light ear protein isoform b [Homo sapiens] 37 0.048
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 37 0.082
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 37 0.082
gi|38044112 restin isoform b [Homo sapiens] 37 0.082
gi|4506751 restin isoform a [Homo sapiens] 37 0.082
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 36 0.11
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 36 0.11
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 36 0.14
gi|194097365 FtsJ homolog 3 [Homo sapiens] 36 0.14
gi|239787821 syncoilin, intermediate filament 1 isoform 2 [Homo ... 35 0.18
gi|166706887 syncoilin, intermediate filament 1 isoform 1 [Homo ... 35 0.18
gi|63252870 osteosarcoma amplified 9 isoform 4 precursor [Homo s... 35 0.18
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 35 0.18
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 35 0.18
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 35 0.24
gi|195963410 MEF2 activating motif and SAP domain containing tra... 35 0.24
gi|32698970 MEF2 activating motif and SAP domain containing tran... 35 0.24
>gi|190358543 hypothetical protein LOC57654 [Homo sapiens]
Length = 709
Score = 1435 bits (3714), Expect = 0.0
Identities = 709/709 (100%), Positives = 709/709 (100%)
Query: 1 MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS
Sbjct: 1 MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW
Sbjct: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
Query: 121 NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAER 180
NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAER
Sbjct: 121 NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAER 180
Query: 181 EMQEMSGEIESCLTEVESCFRLLVPFDFDPNPETESLGMASGMSDALRSSCAGQVGPCRS 240
EMQEMSGEIESCLTEVESCFRLLVPFDFDPNPETESLGMASGMSDALRSSCAGQVGPCRS
Sbjct: 181 EMQEMSGEIESCLTEVESCFRLLVPFDFDPNPETESLGMASGMSDALRSSCAGQVGPCRS 240
Query: 241 GTPDPRDGEQPCCSRDLPASAGHPRAGGGAQPSQTATGDPSDEDEDSDLEEFVRSHGLGS 300
GTPDPRDGEQPCCSRDLPASAGHPRAGGGAQPSQTATGDPSDEDEDSDLEEFVRSHGLGS
Sbjct: 241 GTPDPRDGEQPCCSRDLPASAGHPRAGGGAQPSQTATGDPSDEDEDSDLEEFVRSHGLGS 300
Query: 301 HKYTLDVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQRFTRVGTHGGC 360
HKYTLDVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQRFTRVGTHGGC
Sbjct: 301 HKYTLDVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQRFTRVGTHGGC 360
Query: 361 LKRAIDLKAELELVLRKYKELDIEPEGGERRRTEALGDAEEDEDDEDFVEVPEKEGYEPH 420
LKRAIDLKAELELVLRKYKELDIEPEGGERRRTEALGDAEEDEDDEDFVEVPEKEGYEPH
Sbjct: 361 LKRAIDLKAELELVLRKYKELDIEPEGGERRRTEALGDAEEDEDDEDFVEVPEKEGYEPH 420
Query: 421 IPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPS 480
IPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPS
Sbjct: 421 IPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPS 480
Query: 481 RALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEV 540
RALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEV
Sbjct: 481 RALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEV 540
Query: 541 VNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRP 600
VNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRP
Sbjct: 541 VNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRP 600
Query: 601 LDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRRYPSLTN 660
LDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRRYPSLTN
Sbjct: 601 LDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRRYPSLTN 660
Query: 661 LKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKFSNQFNYALN 709
LKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKFSNQFNYALN
Sbjct: 661 LKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKFSNQFNYALN 709
>gi|239748340 PREDICTED: hypothetical protein XP_002346633 [Homo
sapiens]
Length = 465
Score = 546 bits (1406), Expect = e-155
Identities = 303/439 (69%), Positives = 318/439 (72%), Gaps = 59/439 (13%)
Query: 290 EEFVRSHGLGSHKYTLDVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQ 349
E FVRSH L V E L++ D + R+ + +R AV W +
Sbjct: 67 ELFVRSHQFRM----LVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGWNE 122
Query: 350 RFTR------VGTHGGCLKRAIDLK-------AELELVLRKYKELD------IEPEGGER 390
+F +G H + +D + AE + K K LD E
Sbjct: 123 KFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAEREM 182
Query: 391 RRTEALGDAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRM 450
++TEALGDAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRM
Sbjct: 183 QQTEALGDAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRM 242
Query: 451 DEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHY 510
DEEVSDPTSAAAQLRQL L PSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHY
Sbjct: 243 DEEVSDPTSAAAQLRQLPGPLASPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHY 302
Query: 511 WGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAGKFEPVQHWCRAP 570
WGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAGKFEPVQHWCRAP
Sbjct: 303 WGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAGKFEPVQHWCRAP 362
Query: 571 RPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQRRQLQKQERPEWQDPELMRD 630
RPDGRLCERQDRLK EWQDPELMRD
Sbjct: 363 RPDGRLCERQDRLK------------------------------------EWQDPELMRD 386
Query: 631 VEAATGQDLGSSRYSGKGRGKKRRYPSLTNLKAQADTARARIGRKVFAKAAVRRVVAAMN 690
VEAATGQDLGSSRYSGKGRGKKRRYPSLTNLKAQADTARARIGRKVFAKAAVRRVVAAMN
Sbjct: 387 VEAATGQDLGSSRYSGKGRGKKRRYPSLTNLKAQADTARARIGRKVFAKAAVRRVVAAMN 446
Query: 691 RMDQKKHEKFSNQFNYALN 709
RMDQKKHEKFSNQFNYALN
Sbjct: 447 RMDQKKHEKFSNQFNYALN 465
Score = 362 bits (928), Expect = e-100
Identities = 183/184 (99%), Positives = 184/184 (100%)
Query: 1 MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS
Sbjct: 1 MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW
Sbjct: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
Query: 121 NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAER 180
NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAER
Sbjct: 121 NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAER 180
Query: 181 EMQE 184
EMQ+
Sbjct: 181 EMQQ 184
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 41.2 bits (95), Expect = 0.003
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 398 DAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRT--RMDEEVS 455
+A++DEDDED EV E+E EP+ E A E+ T + T T ++E V
Sbjct: 241 EADDDEDDEDGDEV-EEEAEEPY-----------EEATERTTSIATTTTTTTESVEEVVR 288
Query: 456 DPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQEL 515
PT+AA+ + +L P + + +E + + V+ + + L
Sbjct: 289 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 348
Query: 516 PTAGKIVKSDSQHRFWKPSEVEEEVVN 542
P A K K+ QH K +E+E N
Sbjct: 349 PKADK--KAVIQHFQEKVESLEQEAAN 373
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 41.2 bits (95), Expect = 0.003
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 398 DAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRT--RMDEEVS 455
+A++DEDDED EV E+E EP+ E A E+ T + T T ++E V
Sbjct: 185 EADDDEDDEDGDEV-EEEAEEPY-----------EEATERTTSIATTTTTTTESVEEVVR 232
Query: 456 DPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQEL 515
PT+AA+ + +L P + + +E + + V+ + + L
Sbjct: 233 VPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 292
Query: 516 PTAGKIVKSDSQHRFWKPSEVEEEVVN 542
P A K K+ QH K +E+E N
Sbjct: 293 PKADK--KAVIQHFQEKVESLEQEAAN 317
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 39.7 bits (91), Expect = 0.010
Identities = 57/277 (20%), Positives = 104/277 (37%), Gaps = 32/277 (11%)
Query: 380 ELDIEPEGGERRRTEALGDAEEDEDDEDFVEVPEKE-GYEPHIPDHLRPEYGLEAAPEKD 438
E + +PE + EA G+A+ + +D VE PE E +P PE EA PE +
Sbjct: 1864 EGEAQPESEDVEAPEAEGEAQPESED---VETPEAEWEVQPESEGAEAPEAEKEAQPETE 1920
Query: 439 TVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQKLAAERAR 498
+ V L T E +P S A+ ++ + +A + +P E++ + ++ A
Sbjct: 1921 S-VEALET-----EGEDEPESEGAEAQEAEE------AAQEAEGQTQP-ESEVIESQEAE 1967
Query: 499 APVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAG 558
P D+ E+ T ++ + + E E E+ A+ S +
Sbjct: 1968 EEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVE--- 2024
Query: 559 KFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQRRQLQKQE 618
P+ +G + + G P D + E+ A+E ++Q+ E
Sbjct: 2025 ---------AQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAE 2075
Query: 619 ---RPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKK 652
PE +D + A + G +G +K
Sbjct: 2076 GEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQK 2112
Score = 37.7 bits (86), Expect = 0.037
Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 44/260 (16%)
Query: 394 EALGDAEEDEDDEDFVEVPEKEG--------YEPHIPDHLRPEYGLEAAPEKDTVVRCLR 445
EA G+A+ + + VE PE EG +P D PE EA PE + V
Sbjct: 1839 EAEGEAQPESEG---VEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDV----- 1890
Query: 446 TRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYG 505
T E P S A+ + P + + + E + AE A
Sbjct: 1891 -ETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQE 1949
Query: 506 VDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADISEMLRSRHITFAGKFEPVQH 565
+ GQ P + ++++S +P + E + ++ G+ +P
Sbjct: 1950 AE----GQTQPES-EVIESQEAEEEAQPESEDVEALEVEVETQ------EAEGEAQPESE 1998
Query: 566 WCRAPRPDGRLCERQDRLKCPFHGKIVPRDD--EGRPLDPEDRAREQRRQLQKQE---RP 620
AP +G + E ++ + P D E +P + A+E + QK E +P
Sbjct: 1999 DVEAPEAEGEMQEAEEEAQ--------PESDGVEAQPKSEGEEAQEVEGETQKTEGDAQP 2050
Query: 621 E---WQDPELMRDVEAATGQ 637
E + PE + + A G+
Sbjct: 2051 ESDGVEAPEAEEEAQEAEGE 2070
Score = 35.8 bits (81), Expect = 0.14
Identities = 54/275 (19%), Positives = 95/275 (34%), Gaps = 51/275 (18%)
Query: 389 ERRRTEALGDAEEDEDDEDFVEVPEKEGYEPHIPDHLRPEYGL--------EAAPEKDTV 440
E EAL EDE + + E E E +PE + EA PE + V
Sbjct: 1918 ETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDV 1977
Query: 441 VRC-LRTRTRMDEEVSDPTS-------AAAQLRQLRDHLPPPSSASPSRALPEPQEAQKL 492
+ T+ E + P S A ++++ + P S ++ E +EAQ++
Sbjct: 1978 EALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEV 2037
Query: 493 AAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADISEMLRSR 552
E + G P + + +++ + E E EV A+ S
Sbjct: 2038 EGETQKTE-----------GDAQPESDGVEAPEAEE---EAQEAEGEVQEAEGEAHPESE 2083
Query: 553 HI---TFAGKFEPVQHWCRAPRPDGRLCERQDRLKCP-----------------FHGKIV 592
+ G+ +P AP +G ++ + ++ P G+
Sbjct: 2084 DVDAQEAEGEAQPESEGVEAPEAEGE-AQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQ 2142
Query: 593 PRDDEGRPLDPEDRAREQRRQLQKQERPEWQDPEL 627
P + D E A+ + ++ QE E PEL
Sbjct: 2143 PESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPEL 2177
Score = 31.6 bits (70), Expect = 2.7
Identities = 100/505 (19%), Positives = 164/505 (32%), Gaps = 125/505 (24%)
Query: 3 QKLSKLVEELTTSGE--PRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
Q ++ VE L T GE P + +E ++ + +E Q ++ +Q +E A+
Sbjct: 1916 QPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPE-- 1973
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
S E LE+ + T A+ EA EG
Sbjct: 1974 --------------------SEDVEALEVEVETQEAEG-----EAQPESEDVEAPEAEGE 2008
Query: 121 NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAER 180
++ E + + G ++ + Q+ + +K E + Q D + A +AE
Sbjct: 2009 MQEAEEEAQPESDGVEAQPKSEGEEAQEVEGET---QKTEGDAQPESDGV---EAPEAEE 2062
Query: 181 EMQEMSGEIESCLTEVESCFRLLVPFDFDPNPETESLGMASGMSDALRSSCAGQVGPCRS 240
E QE GE++ + + +PE+E + +A S G P
Sbjct: 2063 EAQEAEGEVQEA--------------EGEAHPESEDVDAQEAEGEAQPES-EGVEAPEAE 2107
Query: 241 GTPDPRDGEQPCCSRDLPASAGHPRAGGGAQPSQTATGDPSDEDEDSDLEEFVRSHGLGS 300
G +G + P G AQP P E E S G+ +
Sbjct: 2108 GEAQKAEGIEA------------PETEGEAQPESEGIEAPEAEGEAQP-----ESEGVEA 2150
Query: 301 HKYTLDVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQRFTRVGTHGGC 360
+ + SEG++ QE E+
Sbjct: 2151 QDAEGEAQPESEGIEAQEAEE--------------------------------------- 2171
Query: 361 LKRAIDLKAELELVLRKYKELDIEPEGGERRRTEALGDAEEDEDDEDFVEV-----PEKE 415
+ + ELE V E + +PE EA G+A+ + + + E PE E
Sbjct: 2172 -----EAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPE 2226
Query: 416 GYE-PHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPP 474
G E P +PE E EK + + EE S+ +S + R PPP
Sbjct: 2227 GVETPEAEGEAQPESEGETQGEKKGSPQ-VSLGDGQSEEASESSSPVPEDRP----TPPP 2281
Query: 475 SSASPSRALPEPQEAQKLAAERARA 499
SP P + + +RA
Sbjct: 2282 ---SPGGDTPHQRPGSQTGPSSSRA 2303
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 38.5 bits (88), Expect = 0.022
Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 2 DQKLSKLVEELTTS-GEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
+++++ L ++L + E N EK++EL+ E+ + R +I +E+ E++ S
Sbjct: 532 EEEINVLKQDLQNALEESERNKEKVRELE------EKLVEREKGTVIKPPVEEYEEMKSS 585
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
++E + + F QE + T +Q + A+ +++A R ++
Sbjct: 586 YCSVIENMN-KEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDEL 644
Query: 121 NEKFGEA---YKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQ 177
N++ E YK+ R K ++ D A + K E EK L + + +A
Sbjct: 645 NKQVSELSQLYKEAQAELEDYRKRKSLE--DVTAEYI--HKAEHEKLMQLTNVSRAKAED 700
Query: 178 AEREMQEMSGEIESCLTEVE 197
A EM+ ++ + LT+++
Sbjct: 701 ALSEMKSQYSKVLNELTQLK 720
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 38.5 bits (88), Expect = 0.022
Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 2 DQKLSKLVEELTTS-GEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
+++++ L ++L + E N EK++EL+ E+ + R +I +E+ E++ S
Sbjct: 521 EEEINVLKQDLQNALEESERNKEKVRELE------EKLVEREKGTVIKPPVEEYEEMKSS 574
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
++E + + F QE + T +Q + A+ +++A R ++
Sbjct: 575 YCSVIENMN-KEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDEL 633
Query: 121 NEKFGEA---YKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQ 177
N++ E YK+ R K ++ D A + K E EK L + + +A
Sbjct: 634 NKQVSELSQLYKEAQAELEDYRKRKSLE--DVTAEYI--HKAEHEKLMQLTNVSRAKAED 689
Query: 178 AEREMQEMSGEIESCLTEVE 197
A EM+ ++ + LT+++
Sbjct: 690 ALSEMKSQYSKVLNELTQLK 709
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 38.5 bits (88), Expect = 0.022
Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 2 DQKLSKLVEELTTS-GEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
+++++ L ++L + E N EK++EL+ E+ + R +I +E+ E++ S
Sbjct: 500 EEEINVLKQDLQNALEESERNKEKVRELE------EKLVEREKGTVIKPPVEEYEEMKSS 553
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
++E + + F QE + T +Q + A+ +++A R ++
Sbjct: 554 YCSVIENMN-KEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDEL 612
Query: 121 NEKFGEA---YKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQ 177
N++ E YK+ R K ++ D A + K E EK L + + +A
Sbjct: 613 NKQVSELSQLYKEAQAELEDYRKRKSLE--DVTAEYI--HKAEHEKLMQLTNVSRAKAED 668
Query: 178 AEREMQEMSGEIESCLTEVE 197
A EM+ ++ + LT+++
Sbjct: 669 ALSEMKSQYSKVLNELTQLK 688
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 38.5 bits (88), Expect = 0.022
Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 2 DQKLSKLVEELTTS-GEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
+++++ L ++L + E N EK++EL+ E+ + R +I +E+ E++ S
Sbjct: 529 EEEINVLKQDLQNALEESERNKEKVRELE------EKLVEREKGTVIKPPVEEYEEMKSS 582
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
++E + + F QE + T +Q + A+ +++A R ++
Sbjct: 583 YCSVIENMN-KEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDEL 641
Query: 121 NEKFGEA---YKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQ 177
N++ E YK+ R K ++ D A + K E EK L + + +A
Sbjct: 642 NKQVSELSQLYKEAQAELEDYRKRKSLE--DVTAEYI--HKAEHEKLMQLTNVSRAKAED 697
Query: 178 AEREMQEMSGEIESCLTEVE 197
A EM+ ++ + LT+++
Sbjct: 698 ALSEMKSQYSKVLNELTQLK 717
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 38.5 bits (88), Expect = 0.022
Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 2 DQKLSKLVEELTTS-GEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
+++++ L ++L + E N EK++EL+ E+ + R +I +E+ E++ S
Sbjct: 529 EEEINVLKQDLQNALEESERNKEKVRELE------EKLVEREKGTVIKPPVEEYEEMKSS 582
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
++E + + F QE + T +Q + A+ +++A R ++
Sbjct: 583 YCSVIENMN-KEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDEL 641
Query: 121 NEKFGEA---YKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQ 177
N++ E YK+ R K ++ D A + K E EK L + + +A
Sbjct: 642 NKQVSELSQLYKEAQAELEDYRKRKSLE--DVTAEYI--HKAEHEKLMQLTNVSRAKAED 697
Query: 178 AEREMQEMSGEIESCLTEVE 197
A EM+ ++ + LT+++
Sbjct: 698 ALSEMKSQYSKVLNELTQLK 717
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 38.5 bits (88), Expect = 0.022
Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 15/200 (7%)
Query: 2 DQKLSKLVEELTTS-GEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLS 60
+++++ L ++L + E N EK++EL+ E+ + R +I +E+ E++ S
Sbjct: 529 EEEINVLKQDLQNALEESERNKEKVRELE------EKLVEREKGTVIKPPVEEYEEMKSS 582
Query: 61 AFQIVEELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGW 120
++E + + F QE + T +Q + A+ +++A R ++
Sbjct: 583 YCSVIENMN-KEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDEL 641
Query: 121 NEKFGEA---YKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQ 177
N++ E YK+ R K ++ D A + K E EK L + + +A
Sbjct: 642 NKQVSELSQLYKEAQAELEDYRKRKSLE--DVTAEYI--HKAEHEKLMQLTNVSRAKAED 697
Query: 178 AEREMQEMSGEIESCLTEVE 197
A EM+ ++ + LT+++
Sbjct: 698 ALSEMKSQYSKVLNELTQLK 717
>gi|33350928 disabled homolog 1 [Homo sapiens]
Length = 555
Score = 38.5 bits (88), Expect = 0.022
Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 26/254 (10%)
Query: 269 GAQPSQTATGDPSDEDEDSDLEEFVR-SHGLGSHKYTLDVELCSEGLKVQENEDNLALIH 327
G A GD +D L+ V + G HK + + + G+K+ + + H
Sbjct: 48 GIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHH 107
Query: 328 AARDTLKLIR-----NKFLPAVCS--WIQRFTRVGTHGGCLKRAIDLKAELELVLRKYKE 380
A + I ++ VC RF + T +DL+ +L+ +
Sbjct: 108 HAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQLIYELKQR 167
Query: 381 LDIEPEGGERRRTEAL---GDAEEDEDDEDFVEVPEKEGYEP-HIPDHLRPEYGLEAAPE 436
++E + + ++ E EED +D + + + G+EP P+ Y + + +
Sbjct: 168 EELEKKAQKDKQCEQAVYQTILEEDVEDPVYQYIVFEAGHEPIRDPETEENIYQVPTSQK 227
Query: 437 KDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSAS-PSRALPE----PQEAQK 491
K+ V D S P SA QL D PP S P+ A P P +Q
Sbjct: 228 KEGVY---------DVPKSQPVSAVTQLELFGDMSTPPDITSPPTPATPGDAFIPSSSQT 278
Query: 492 LAAERARAPVVPYG 505
L A VP+G
Sbjct: 279 LPASADVFSSVPFG 292
>gi|23110966 light ear protein isoform a [Homo sapiens]
Length = 708
Score = 37.4 bits (85), Expect = 0.048
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 408 FVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQL 467
F+ VP +G P+ L LE P +DT + LR + + T AQ QL
Sbjct: 389 FLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEM----LTQHGAQ-EQL 443
Query: 468 RDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSD 525
DH S A RA P P+ R R P++ +D G +LPT + + D
Sbjct: 444 EDHPGHSSQAPIPRADPLPR--------RTRRPLLLPRLDPGQRGNKLPTGEQGLDED 493
>gi|23110970 light ear protein isoform b [Homo sapiens]
Length = 703
Score = 37.4 bits (85), Expect = 0.048
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 408 FVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQL 467
F+ VP +G P+ L LE P +DT + LR + + T AQ QL
Sbjct: 384 FLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEM----LTQHGAQ-EQL 438
Query: 468 RDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSD 525
DH S A RA P P+ R R P++ +D G +LPT + + D
Sbjct: 439 EDHPGHSSQAPIPRADPLPR--------RTRRPLLLPRLDPGQRGNKLPTGEQGLDED 488
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 36.6 bits (83), Expect = 0.082
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 525 DSQHRFWKPSEV---------EEEVVNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGR 575
+ + + W+ E E+E + EM++ + + E +Q + R + +
Sbjct: 513 EQEEKMWRQEEKIREQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMQEQEKMRRQEEK 572
Query: 576 LCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQRRQLQKQERPEWQDPELMRDVE 632
+ E++++++ K R+ E + + E++ REQ +Q+QE W+ E M + E
Sbjct: 573 IREQEEKIR---EQKEKIREQEEKIWEQEEKIREQEEMMQEQEEKMWEQEEKMCEQE 626
Score = 33.1 bits (74), Expect = 0.91
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 103 REAAQRLRQATTRAVEGWNEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEE 162
RE +++R+ E EK GE +K+ R +K+ Q+ R E+ RE+E
Sbjct: 533 REQEEKIREQEEMMQEQ-EEKMGEQEEKMQEQEKMRRQEEKIREQEEKIREQKEKIREQE 591
Query: 163 KQKHLDKIYQERASQAEREMQEMSGEIESCLTEVE 197
+KI+++ + RE +EM E E + E E
Sbjct: 592 -----EKIWEQ--EEKIREQEEMMQEQEEKMWEQE 619
Score = 31.2 bits (69), Expect = 3.5
Identities = 38/202 (18%), Positives = 78/202 (38%), Gaps = 44/202 (21%)
Query: 432 EAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQK 491
E E+D + L T DEE+ + + +L++ L S L + +K
Sbjct: 197 ELTKERDALSLELYRNTITDEELKEKNA------KLQEKLQLVESEKSEIQLNVKELKRK 250
Query: 492 LAAERARAPVVPYGVDLHYWGQELPT-AGKIVKSDSQHRFWKPSEVEEEVVNADISEMLR 550
L + P + + G+EL + + K+ ++ W ++E +M R
Sbjct: 251 LERAKLLLPQQQLQAEADHLGKELQSVSAKLQAQVEENELWNRLNQQQE------EKMWR 304
Query: 551 SRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQ 610
E +Q W + ++ E++++++ + E++ REQ
Sbjct: 305 QE--------EKIQEW------EEKIQEQEEKIR-----------------EQEEKIREQ 333
Query: 611 RRQLQKQERPEWQDPELMRDVE 632
++++QE W+ E MR E
Sbjct: 334 EEKMRRQEEMMWEKEEKMRRQE 355
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 36.6 bits (83), Expect = 0.082
Identities = 112/510 (21%), Positives = 178/510 (34%), Gaps = 70/510 (13%)
Query: 8 LVEELT--TSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLIAQLTQEHAEIRLSAFQIV 65
L++E T TSGE N EK K K++ Q R R+ + + ++E ++ Q
Sbjct: 545 LLKEKTDDTSGED--NDEKEAVASKGRKTANSQGRRKGRITRSMANEANSEEAITPQQ-- 600
Query: 66 EELFVRSHQFRMLVVSNFQEFLELTLGTDPAQPLPPPREAAQRLRQATTRAVEGWNEKFG 125
S + + ++ + E + T L R + R ++ V +
Sbjct: 601 ------SAELASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYF 654
Query: 126 EAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAEREMQEM 185
K+ L +H K++ ++ NAR +K++ + + E E +
Sbjct: 655 NYKKRQNLDEILQQHKLKME-KERNAR---RKKKKAPAAASEEAAFPPVVEDEEMEASGV 710
Query: 186 SGEIESCLTEVESCFRLLVPFDFDPNPETESLGMASGMSDALRSSCAGQVGPCRSGTPDP 245
SG E + E E+ + P+P TE+ +G + + G GP G P P
Sbjct: 711 SGNEEEMVEEAEATVNNSSDTESIPSPHTEA-AKDTGQNGPKPPATLGADGP-PPGPPTP 768
Query: 246 RDGEQPCCSRDLPASAGHPRAGGGAQPSQTATGDPSDEDEDSDLEEFVRSHGLGSHKYTL 305
+ P + PAS GA A PS EE
Sbjct: 769 PPEDIPAPTEPTPAS-----EATGAPTPPPAPPSPSAPPPVVPKEE-------------- 809
Query: 306 DVELCSEGLKVQENEDNLALIHAARDTLKLIRNKFLPAVCSWIQRFTRVGTHGGCLKRAI 365
E + V+E E+ A + L + K V S G G A
Sbjct: 810 KEEETAAAPPVEEGEEQKP---PAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDAEAA 866
Query: 366 DLKAELELVLRKYKELDIEPEGGERRRTEALGDAEEDEDDEDFV----EVPEKEGYEPH- 420
+ AE L K EGG R T A + D EV E EG + +
Sbjct: 867 EATAEGALKAEK-------KEGGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNR 919
Query: 421 ----IPDHLRP--EYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPP 474
P L P + A+P+K ++ L+ R +A ++ + H PP
Sbjct: 920 LLSPRPSLLTPTGDPRANASPQKPLDLKQLKQR----------AAAIPPIQVTKVHEPPR 969
Query: 475 SSASPSR-ALPEPQEAQKLAAERARAPVVP 503
A+P++ A P P Q L E + AP P
Sbjct: 970 EDAAPTKPAPPAPPPPQNLQPE-SDAPQQP 998
Score = 35.0 bits (79), Expect = 0.24
Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 48/289 (16%)
Query: 368 KAELELVLRKYKELDIEPEGGERRRTE-ALGDAEEDED-DEDFVEVPEKEGYEPHIPDHL 425
K+E+E + K L++ P+ R A G ED +D + E P P H
Sbjct: 97 KSEMEFIESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHT 156
Query: 426 RPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPE 485
PE LE P + + ++ R+D E++ ++L++ + L +A P PE
Sbjct: 157 DPE--LELVPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEE-EAAKP----PE 209
Query: 486 PQEAQKLAAERARAPVVPYGVDL-HYWGQELPTAGKIVKSDSQHR-------------FW 531
P++ PV P ++ H ++ K+++ HR +
Sbjct: 210 PEK-----------PVSPPPIESKHRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYN 258
Query: 532 KPSEVEEEVVNADISEMLRSRHIT-FAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGK 590
+PS+ + N I++ +R + I F + + W + + C+R D+L + K
Sbjct: 259 QPSDTRQYHENIKINQAMRKKLILYFKRRNHARKQW------EQKFCQRYDQLMEAWEKK 312
Query: 591 IVPRDDEGRPLDPEDRAREQR-RQLQKQERPE-WQDPELMRDVEAATGQ 637
+ E +P RA+E + R+ +++ PE + EL +++ GQ
Sbjct: 313 V-----ERIENNPRRRAKESKVREYYEKQFPEIRKQRELQERMQSRVGQ 356
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 36.6 bits (83), Expect = 0.082
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 31/213 (14%)
Query: 6 SKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLL----IAQLTQEHAEIRLSA 61
+K+++ T+ + + EK+ +L + K+S E S +L A+ +H EI +A
Sbjct: 710 TKVIDNFTS--QLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNA 767
Query: 62 FQIVEELFVRSHQFRMLVVSNFQEFL------------ELTLGTDPAQPLPPPREAAQRL 109
R Q R L ++N QE L EL + + + QR
Sbjct: 768 ESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRS 827
Query: 110 RQATTRAVEGWNEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDK 169
Q T + E+F L+ LR N D A+ + +REE+ K +K
Sbjct: 828 MQETVNKLHQKEEQFN----MLSSDLEKLREN----LADMEAKFREKDEREEQLIKAKEK 879
Query: 170 IYQERASQAEREMQEMSGEIESCLTEVESCFRL 202
+ + A E+ +MSG+ S LT++ RL
Sbjct: 880 LENDIA-----EIMKMSGDNSSQLTKMNDELRL 907
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 36.6 bits (83), Expect = 0.082
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 31/213 (14%)
Query: 6 SKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLL----IAQLTQEHAEIRLSA 61
+K+++ T+ + + EK+ +L + K+S E S +L A+ +H EI +A
Sbjct: 745 TKVIDNFTS--QLKATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNA 802
Query: 62 FQIVEELFVRSHQFRMLVVSNFQEFL------------ELTLGTDPAQPLPPPREAAQRL 109
R Q R L ++N QE L EL + + + QR
Sbjct: 803 ESSKASSITRELQGRELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAVSVQRS 862
Query: 110 RQATTRAVEGWNEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDK 169
Q T + E+F L+ LR N D A+ + +REE+ K +K
Sbjct: 863 MQETVNKLHQKEEQFN----MLSSDLEKLREN----LADMEAKFREKDEREEQLIKAKEK 914
Query: 170 IYQERASQAEREMQEMSGEIESCLTEVESCFRL 202
+ + A E+ +MSG+ S LT++ RL
Sbjct: 915 LENDIA-----EIMKMSGDNSSQLTKMNDELRL 942
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 36.2 bits (82), Expect = 0.11
Identities = 40/122 (32%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 209 DPNPETESLGM--ASGMSDALR----SSCAGQVGPCRSGTPDPRD----GEQPCCSRDL- 257
DP T++ G+ ++G+ R S A R G PD RD + P S++L
Sbjct: 361 DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELA 420
Query: 258 --PASAGHPRAGG----GAQPSQTATGDPSDEDEDSDLEEFVRSHGLGSHKYTLDVELCS 311
P G GG G +P+Q ATG D D SD E S G S D E S
Sbjct: 421 GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGE--S 478
Query: 312 EG 313
EG
Sbjct: 479 EG 480
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 36.2 bits (82), Expect = 0.11
Identities = 40/122 (32%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 209 DPNPETESLGM--ASGMSDALR----SSCAGQVGPCRSGTPDPRD----GEQPCCSRDL- 257
DP T++ G+ ++G+ R S A R G PD RD + P S++L
Sbjct: 361 DPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPAQAPTSSQELA 420
Query: 258 --PASAGHPRAGG----GAQPSQTATGDPSDEDEDSDLEEFVRSHGLGSHKYTLDVELCS 311
P G GG G +P+Q ATG D D SD E S G S D E S
Sbjct: 421 GAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGE--S 478
Query: 312 EG 313
EG
Sbjct: 479 EG 480
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 35.8 bits (81), Expect = 0.14
Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 15/264 (5%)
Query: 384 EPEGGERRRTEALGDAEE--DEDDEDFVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVV 441
E E R E + + EE + +E+ E EKE + +P+ + E E++ +
Sbjct: 396 EREKKMREEEETMREQEEKMQKQEENMWEQEEKEWQQQRLPEQKEKLWEQEKMQEQEEKI 455
Query: 442 RCLRTRTRMDEEVSDPTSAA---AQLRQLRDHL--PPPSSASPSRALPEPQEAQKLAAER 496
+ R EE+ ++R+ D + + + + +E ER
Sbjct: 456 WEQEEKIRDQEEMWGQEKKMWRQEKMREQEDQMWEQEEKMRDQEQKMWDQEERMWEQDER 515
Query: 497 ARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEV--------EEEVVNADISEM 548
R W QE + + + + W E E E + EM
Sbjct: 516 LREKEERMREQKKMWQQEEKMREEKKTQEQEKKTWDQEEKMREEERMREREKKMREEEEM 575
Query: 549 LRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAR 608
+R + + E ++ + Q+ K+ +++E + + E+
Sbjct: 576 MREQEEKMQEQEEKMREQEEKMWEQEEKMQEQEEKMWEQEEKMWEQEEEDKMQEQEEMMW 635
Query: 609 EQRRQLQKQERPEWQDPELMRDVE 632
EQ ++Q+QE W+ E MR+ E
Sbjct: 636 EQEEKMQEQEEKMWEQEEKMREQE 659
Score = 32.3 bits (72), Expect = 1.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 571 RPDGRLCERQDRLKCPFHGKIVPRDDEGRPLDPEDRAREQRRQLQKQERPEWQDPELMRD 630
R + RL E++ L+ ++ + L + + REQ Q+Q+QE W+ E MR+
Sbjct: 280 RQEKRLREQEKELR-----------EQEKELREQKKLREQEEQMQEQEEKMWEQEEKMRE 328
Query: 631 VE 632
E
Sbjct: 329 QE 330
Score = 30.0 bits (66), Expect = 7.7
Identities = 21/105 (20%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 595 DDEGRPLDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRR 654
D E R + ++R RE+ ++++Q++ WQ E MR+ + Q+ + K R ++R
Sbjct: 504 DQEERMWEQDERLREKEERMREQKKM-WQQEEKMREEKKTQEQEKKTWDQEEKMREEERM 562
Query: 655 YPSLTNLKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEK 699
++ + + R + + + +R M ++K E+
Sbjct: 563 REREKKMREEEEMMREQEEKMQEQEEKMREQEEKMWEQEEKMQEQ 607
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 35.8 bits (81), Expect = 0.14
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 594 RDDEGRPLDP--EDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSR--YSGKGR 649
R+ RP+ E +AR++RR L++ E+ + ++ V+ + + + R Y G
Sbjct: 732 REINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAGL 791
Query: 650 GKKRRYPSLTNLKAQADTARARIGRKVFAKAAVR---RVVAAMNRMDQKKHEK 699
GK++R+ + A+ +GRKV A VR +VV + + DQ+ ++
Sbjct: 792 GKEKRHVTYV-------VAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQRAQQR 837
>gi|239787821 syncoilin, intermediate filament 1 isoform 2 [Homo
sapiens]
Length = 476
Score = 35.4 bits (80), Expect = 0.18
Identities = 45/201 (22%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 1 MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLI-AQLTQE--HAEI 57
++++ +L+ EL EP L +E++++ + + AY+L A+L ++ EI
Sbjct: 189 LEEERDQLIHELVLLREPAL-----QEVQQV----HQDILAAYKLHAQAELERDGLREEI 239
Query: 58 RL---SAFQIVEELFVRSHQF--RMLVVSNFQEFLEL--TLGTDPAQPLPPPREAAQRLR 110
RL F++ +E +Q R V+ F +F E+ T T ++ L R+A Q+ +
Sbjct: 240 RLVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTRATQLSEELAQLRDAYQKQK 299
Query: 111 QATTRAVEGW-NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDK 169
+ + +E +++ G HFL+ ++++ Q N + + + EEE + +
Sbjct: 300 EQLRQQLEAPPSQRDG----------HFLQESRRLSAQFENLMAESRQDLEEEYEPQFLR 349
Query: 170 IYQERASQAEREMQEMSGEIE 190
+ ER + +Q EI+
Sbjct: 350 LL-ERKEAGTKALQRTQAEIQ 369
>gi|166706887 syncoilin, intermediate filament 1 isoform 1 [Homo
sapiens]
Length = 482
Score = 35.4 bits (80), Expect = 0.18
Identities = 45/201 (22%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 1 MDQKLSKLVEELTTSGEPRLNPEKMKELKKICKSSEEQLSRAYRLLI-AQLTQE--HAEI 57
++++ +L+ EL EP L +E++++ + + AY+L A+L ++ EI
Sbjct: 189 LEEERDQLIHELVLLREPAL-----QEVQQV----HQDILAAYKLHAQAELERDGLREEI 239
Query: 58 RL---SAFQIVEELFVRSHQF--RMLVVSNFQEFLEL--TLGTDPAQPLPPPREAAQRLR 110
RL F++ +E +Q R V+ F +F E+ T T ++ L R+A Q+ +
Sbjct: 240 RLVKQKLFKVTKECVAYQYQLECRQQDVAQFADFREVLTTRATQLSEELAQLRDAYQKQK 299
Query: 111 QATTRAVEGW-NEKFGEAYKKLALGYHFLRHNKKVDFQDTNARSLAERKREEEKQKHLDK 169
+ + +E +++ G HFL+ ++++ Q N + + + EEE + +
Sbjct: 300 EQLRQQLEAPPSQRDG----------HFLQESRRLSAQFENLMAESRQDLEEEYEPQFLR 349
Query: 170 IYQERASQAEREMQEMSGEIE 190
+ ER + +Q EI+
Sbjct: 350 LL-ERKEAGTKALQRTQAEIQ 369
>gi|63252870 osteosarcoma amplified 9 isoform 4 precursor [Homo
sapiens]
Length = 652
Score = 35.4 bits (80), Expect = 0.18
Identities = 58/263 (22%), Positives = 96/263 (36%), Gaps = 50/263 (19%)
Query: 384 EPEGGERRRTEALGDAEEDEDDEDFVEVPEKEG-----YEPHIPDHLRPEY-------GL 431
+PE E D +EDED+++ + E E P D LR E GL
Sbjct: 406 DPERQREMEEEEDEDEDEDEDEDERQLLGEFEKELEGILLPSDRDRLRSETEKELDPDGL 465
Query: 432 EAAPEKDTVVRCLRTR-----TRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEP 486
+ E+D + L + R++E+ S + +++ PPPS P+P
Sbjct: 466 KKESERDRAMLALTSTLNKLIKRLEEKQSPELVKKHKKKRVVPKKPPPS--------PQP 517
Query: 487 QEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEEVVNADIS 546
E R R + G Q+L K + + + +
Sbjct: 518 TEEDPEHRVRVRVTKLRLGGP----NQDLTVLE-----------MKRENPQLKQIEGLVK 562
Query: 547 EMLRSRHITFAGKFE--PVQHWCRAPRPDGRLCERQD--RLKCPFHGKIVPRDDEGRPLD 602
E+L +T AGK E V+ W R +D LK F +VP +E +
Sbjct: 563 ELLEREGLTAAGKIEIKIVRPWAEGTEEGARWLTDEDTRNLKEIFFNILVPGAEEAQ--- 619
Query: 603 PEDRAREQRRQLQKQERPEWQDP 625
+ R+++++L+ R W P
Sbjct: 620 ---KERQRQKELESNYRRVWGSP 639
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 35.4 bits (80), Expect = 0.18
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 139 RHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAEREMQE 184
+ KK D + A +++K EEEK+KH ++ +++ QA+R+ +E
Sbjct: 70 KERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEE 115
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 35.4 bits (80), Expect = 0.18
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 139 RHNKKVDFQDTNARSLAERKREEEKQKHLDKIYQERASQAEREMQE 184
+ KK D + A +++K EEEK+KH ++ +++ QA+R+ +E
Sbjct: 70 KERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEE 115
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 35.0 bits (79), Expect = 0.24
Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 48/289 (16%)
Query: 368 KAELELVLRKYKELDIEPEGGERRRTE-ALGDAEEDED-DEDFVEVPEKEGYEPHIPDHL 425
K+E+E + K L++ P+ R A G ED +D + E P P H
Sbjct: 97 KSEMEFIESKRPRLELLPDPLLRPSPLLATGQPAGSEDLTKDRSLTGKLEPVSPPSPPHT 156
Query: 426 RPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPE 485
PE LE P + + ++ R+D E++ ++L++ + L +A P PE
Sbjct: 157 DPE--LELVPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEE-EAAKP----PE 209
Query: 486 PQEAQKLAAERARAPVVPYGVDL-HYWGQELPTAGKIVKSDSQHR-------------FW 531
P++ PV P ++ H ++ K+++ HR +
Sbjct: 210 PEK-----------PVSPPPIESKHRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYN 258
Query: 532 KPSEVEEEVVNADISEMLRSRHIT-FAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGK 590
+PS+ + N I++ +R + I F + + W + + C+R D+L + K
Sbjct: 259 QPSDTRQYHENIKINQAMRKKLILYFKRRNHARKQW------EQKFCQRYDQLMEAWEKK 312
Query: 591 IVPRDDEGRPLDPEDRAREQR-RQLQKQERPE-WQDPELMRDVEAATGQ 637
+ E +P RA+E + R+ +++ PE + EL +++ GQ
Sbjct: 313 V-----ERIENNPRRRAKESKVREYYEKQFPEIRKQRELQERMQSRVGQ 356
>gi|195963410 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 1 [Homo sapiens]
Length = 415
Score = 35.0 bits (79), Expect = 0.24
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 20/87 (22%)
Query: 204 VPFDF-------DPNPETESLGMASGMSDALRSSCAGQVGPCRSGTPDPRDGEQPCCSRD 256
+P DF P+P++E G++S S +L S P S +P PRD P S D
Sbjct: 327 IPLDFPGSFDVLSPSPDSE--GLSSVFSSSLPS-------PTNSSSPSPRD---PTDSLD 374
Query: 257 -LPASAGHPRAGGGAQPSQTATGDPSD 282
L A +G P G G P + D SD
Sbjct: 375 WLEALSGGPPLGSGPPPPSIFSADLSD 401
>gi|32698970 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 2 [Homo sapiens]
Length = 312
Score = 35.0 bits (79), Expect = 0.24
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 20/87 (22%)
Query: 204 VPFDF-------DPNPETESLGMASGMSDALRSSCAGQVGPCRSGTPDPRDGEQPCCSRD 256
+P DF P+P++E G++S S +L S P S +P PRD P S D
Sbjct: 224 IPLDFPGSFDVLSPSPDSE--GLSSVFSSSLPS-------PTNSSSPSPRD---PTDSLD 271
Query: 257 -LPASAGHPRAGGGAQPSQTATGDPSD 282
L A +G P G G P + D SD
Sbjct: 272 WLEALSGGPPLGSGPPPPSIFSADLSD 298
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,348,991
Number of Sequences: 37866
Number of extensions: 1625995
Number of successful extensions: 12255
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 11419
Number of HSP's gapped (non-prelim): 953
length of query: 709
length of database: 18,247,518
effective HSP length: 109
effective length of query: 600
effective length of database: 14,120,124
effective search space: 8472074400
effective search space used: 8472074400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.