Guide to the Human Genome
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Name: GPAM Sequence: fasta or formatted (828aa) NCBI GI: 190358539
Description:

mitochondrial glycerol 3-phosphate acyltransferase

Referenced in:

Lipid Metabolism
Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         49           2
 C cysteine            2.2         18           2
 D aspartate           4.0         33           2
 E glutamate           6.9         57           2
 F phenylalanine       5.0         41           2
 G glycine             5.0         41           2
 H histidine           2.9         24           1
 I isoleucine          6.3         52           2
 K lysine              5.2         43           3
 L leucine            11.7         97           3
 M methionine          1.4         12           1
 N asparagine          4.1         34           2
 P proline             4.2         35           2
 Q glutamine           4.3         36           3
 R arginine            5.9         49           3
 S serine              8.7         72           2
 T threonine           5.3         44           2
 V valine              6.9         57           3
 W tryptophan          1.1          9           1
 Y tyrosine            3.0         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial glycerol 3-phosphate acyltransferase ... 
GPAT2                 0.205   glycerol-3-phosphate acyltransferase 2, mitochondri...
GNPAT                 0.068   glyceronephosphate O-acyltransferase 
LOC653924             0.047   PREDICTED: hypothetical protein LOC653924 
LOC653924             0.031   PREDICTED: hypothetical protein LOC653924 
LOC653924             0.029   PREDICTED: similar to hCG1732629 
DENND1C               0.006   DENN/MADD domain containing 1C 
SYNE1                 0.006   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.006   spectrin repeat containing, nuclear envelope 1 isof...
ALMS1                 0.005   Alstrom syndrome 1 
SRCAP                 0.005   Snf2-related CBP activator protein 
CNGA2                 0.005   cyclic nucleotide gated channel alpha 2 
DNAH9                 0.004   dynein, axonemal, heavy chain 9 isoform 2 
CALR                  0.004   calreticulin precursor 
APLP2                 0.004   amyloid beta (A4) precursor-like protein 2 isoform ...
ZPBP2                 0.004   zona pellucida binding protein 2 isoform 2 
ZPBP2                 0.004   zona pellucida binding protein 2 isoform 1 
INTS8                 0.004   integrator complex subunit 8 
C6orf174              0.003   hypothetical protein LOC387104 
RANBP3                0.003   RAN binding protein 3 isoform RANBP3-a 
APOB                  0.003   apolipoprotein B precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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