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Search of human proteins with 187829623
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187829623 GC-rich promoter binding protein 1 isoform 2 [Homo
sapiens]
(493 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187829623 GC-rich promoter binding protein 1 isoform 2 [Homo ... 1022 0.0
gi|28875782 GC-rich promoter binding protein 1 isoform 1 [Homo s... 969 0.0
gi|187829640 GC-rich promoter binding protein 1 isoform 3 [Homo ... 962 0.0
gi|11056016 GC-rich promoter binding protein 1-like 1 [Homo sapi... 284 1e-76
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 44 4e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 37 0.041
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 37 0.041
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 37 0.041
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 37 0.041
gi|210032580 SET domain containing 1B [Homo sapiens] 37 0.041
gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens] 37 0.041
gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens] 37 0.041
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 37 0.054
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ... 36 0.091
gi|4504487 histidine rich calcium binding protein precursor [Hom... 36 0.091
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 35 0.12
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 35 0.16
gi|9945318 MAX binding protein [Homo sapiens] 35 0.16
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.20
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.20
gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo ... 35 0.20
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 35 0.20
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 35 0.20
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 35 0.20
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 35 0.20
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 35 0.20
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 35 0.20
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 35 0.20
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 35 0.20
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 35 0.20
>gi|187829623 GC-rich promoter binding protein 1 isoform 2 [Homo
sapiens]
Length = 493
Score = 1022 bits (2642), Expect = 0.0
Identities = 493/493 (100%), Positives = 493/493 (100%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP 60
MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP 60
Query: 61 NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET 120
NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET
Sbjct: 61 NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET 120
Query: 121 GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKISQAPLLE 180
GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKISQAPLLE
Sbjct: 121 GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKISQAPLLE 180
Query: 181 YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT 240
YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT
Sbjct: 181 YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT 240
Query: 241 KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK 300
KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK
Sbjct: 241 KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK 300
Query: 301 LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE 360
LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE
Sbjct: 301 LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE 360
Query: 361 RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN 420
RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN
Sbjct: 361 RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN 420
Query: 421 DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT 480
DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT
Sbjct: 421 DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT 480
Query: 481 ETSSSDTSDDDDV 493
ETSSSDTSDDDDV
Sbjct: 481 ETSSSDTSDDDDV 493
>gi|28875782 GC-rich promoter binding protein 1 isoform 1 [Homo
sapiens]
Length = 473
Score = 969 bits (2505), Expect = 0.0
Identities = 473/493 (95%), Positives = 473/493 (95%), Gaps = 20/493 (4%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP 60
MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRP 60
Query: 61 NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET 120
NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET
Sbjct: 61 NGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNET 120
Query: 121 GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKISQAPLLE 180
GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVW E
Sbjct: 121 GRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVW--------------------E 160
Query: 181 YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT 240
YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT
Sbjct: 161 YPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPT 220
Query: 241 KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK 300
KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK
Sbjct: 221 KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK 280
Query: 301 LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE 360
LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE
Sbjct: 281 LNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQE 340
Query: 361 RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN 420
RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN
Sbjct: 341 RDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSEN 400
Query: 421 DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT 480
DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT
Sbjct: 401 DETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDT 460
Query: 481 ETSSSDTSDDDDV 493
ETSSSDTSDDDDV
Sbjct: 461 ETSSSDTSDDDDV 473
>gi|187829640 GC-rich promoter binding protein 1 isoform 3 [Homo
sapiens]
Length = 480
Score = 962 bits (2487), Expect = 0.0
Identities = 473/500 (94%), Positives = 473/500 (94%), Gaps = 27/500 (5%)
Query: 1 MAQHDFAPAWLNFPTPPSSTK-------SSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 53
MAQHDFAPAWLNFPTPPSSTK SSLNFEKHSENFAWTENRYDVNRRRHNSSDGF
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 60
Query: 54 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 113
DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN
Sbjct: 61 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 120
Query: 114 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKI 173
NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVW
Sbjct: 121 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVW-------------- 166
Query: 174 SQAPLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVP 233
EYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVP
Sbjct: 167 ------EYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVP 220
Query: 234 KPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSN 293
KPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSN
Sbjct: 221 KPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSN 280
Query: 294 SSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHN 353
SSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHN
Sbjct: 281 SSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHN 340
Query: 354 SNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMG 413
SNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMG
Sbjct: 341 SNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMG 400
Query: 414 WQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKP 473
WQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKP
Sbjct: 401 WQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKP 460
Query: 474 TTENDDTETSSSDTSDDDDV 493
TTENDDTETSSSDTSDDDDV
Sbjct: 461 TTENDDTETSSSDTSDDDDV 480
>gi|11056016 GC-rich promoter binding protein 1-like 1 [Homo
sapiens]
Length = 474
Score = 284 bits (726), Expect = 1e-76
Identities = 203/522 (38%), Positives = 263/522 (50%), Gaps = 82/522 (15%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF------- 53
MAQHDF PAWLNF TP S+ + FEKH E+ E R+ V+RRRHNSSDGF
Sbjct: 1 MAQHDFVPAWLNFSTPQSAKSPTATFEKHGEHLPRGEGRFGVSRRRHNSSDGFFNNGPLR 60
Query: 54 --------------DSAIGRPNGGNFGRKEKN--GWRTHGRNGTENINHRGGYHGGSSRS 97
DS + G + N GW + R G + ++ R G G+ R
Sbjct: 61 TAGDSWHQPSLFRHDSVDSGVSKGAYAGITGNPSGWHSSSR-GHDGMSQRSGGGTGNHRH 119
Query: 98 RSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDFPSLNPEY--EREPNHNKSLA 155
+ FH+ K E + +KEDK E+ QFE EDFPSLNPE + +P
Sbjct: 120 WNGSFHSRKGCAFQEKPPMEIREEKKEDKVEKLQFEEEDFPSLNPEAGKQHQPCRPIGTP 179
Query: 156 AGVWGLHAQTHTYPTKKISQAPLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLP 215
+GVW E PP+ K + +MLVIKK + +D + F P
Sbjct: 180 SGVW--------------------ENPPSAKQPS-KMLVIKKVSKED-PAAAFSAAFTSP 217
Query: 216 SQPVKNGTG-----PSVYKGLVPKPAAPPTKPTQWKSQTKENKVGT-SFPHESTFGVGNF 269
NG PSVYK LVPKP PP+KP WK+ E+K G+ S ES F
Sbjct: 218 GSHHANGNKLSSVVPSVYKNLVPKPVPPPSKPNAWKANRMEHKSGSLSSSRESAF-TSPI 276
Query: 270 NAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDR 329
+ K + +S KE + S+++ P++ + RLTKLTR TD+KSEFLK LK DR
Sbjct: 277 SVTKPVVLASGAALSSPKE-SPSSTTPPIEISSS--RLTKLTRRTTDRKSEFLKTLKDDR 333
Query: 330 VEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRS 389
+ E+ +D D NST + P+ENG Q +
Sbjct: 334 NGDFSEN-------RDCDKLEDLEDNSTPE-------------PKENGEEGC-HQNGLAL 372
Query: 390 STFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRK 449
+ +VLS SLEAEHRLLK MGWQE ENDE C PLTEDE++EF + +EQL++NG K
Sbjct: 373 PVVEEGEVLSHSLEAEHRLLKAMGWQEYPENDENCLPLTEDELKEFHMKTEQLRRNGFGK 432
Query: 450 NGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDD 491
NG L++ F PW+ ST K E+ DTETSSS+TSDDD
Sbjct: 433 NGFLQSR--SSSLFSPWR-STCKAEFEDSDTETSSSETSDDD 471
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 43.5 bits (101), Expect = 4e-04
Identities = 67/364 (18%), Positives = 136/364 (37%), Gaps = 39/364 (10%)
Query: 34 AWTENRY--DVNRRRHNSSDGFDSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYH 91
+W+ N Y D++ RH+ + G+K+K+ R H + I
Sbjct: 408 SWSYNGYYSDLSTARHSGHHKKRRKEKKVKHKKKGKKQKH-CRRHKQTKKRRILIPSDIE 466
Query: 92 GGSSRSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHN 151
S +R + + +++ + + +++ + K ++ S Y R +H+
Sbjct: 467 SSKSSTRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSY-RSKSHS 525
Query: 152 KSLAAGVW--------GLHAQTHTYPTKKISQAPLLEYPPNPKSRAPRMLVIKKGNTKDL 203
+S + G H+++ + +P+ A ++ K T+ L
Sbjct: 526 QSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHRKRASKSPRKTASQLSENKPVKTEPL 585
Query: 204 QLSGF--------PVVG-NLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKV 254
+ + PVV N+P P+ + PS +K P P KP+ + Q + K
Sbjct: 586 RATMAQNENVVVQPVVAENIPVIPLSDSPPPSRWK-----PGQKPWKPSYERIQEMKAKT 640
Query: 255 GTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQ-QPRLTKLTRM 313
P +ST+ + N S++ NS E ++S S D+ ++ PR +R
Sbjct: 641 THLLPIQSTYSLANIKETGSSSSYHKREKNS--ESDQSTYSKYSDRSSESSPR----SRS 694
Query: 314 RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP 373
R+ + + ++ R R SR+ S + H+ N +R+ I
Sbjct: 695 RSSRSRSYSRSYTRSRSLASSHSRSRSPSSRS------HSRNKYSDHSQCSRSSSYTSIS 748
Query: 374 QENG 377
++G
Sbjct: 749 SDDG 752
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 37.0 bits (84), Expect = 0.041
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 212 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 271
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 272 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 318
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 319 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 348
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 37.0 bits (84), Expect = 0.041
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 212 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 271
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 272 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 318
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 319 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 348
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 37.0 bits (84), Expect = 0.041
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 212 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 271
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 272 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 318
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 319 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 348
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 37.0 bits (84), Expect = 0.041
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 212 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 271
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 272 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 318
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 319 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 348
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 37.0 bits (84), Expect = 0.041
Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 23/183 (12%)
Query: 277 KNFSPSTN-------SVKECNRSNSSSPVDKLNQQPRLTKLTRM-----------RTDKK 318
K PST+ S +E +R + +P + + P+ + R D+K
Sbjct: 979 KRLRPSTSVDEEDEESERERDRDMADTPCELAKRDPKGVGVRRRPARPLELDSGGEEDEK 1038
Query: 319 SEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGN 378
+ + EEE E+E + DDDS + S + ++ ++ +++E G+
Sbjct: 1039 ESLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDEDTALSEASEKDE-----GD 1093
Query: 379 ASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVI 438
+ I +S T SS +E E + +E A E+E E +++
Sbjct: 1094 SDEEETVSIVTSKAEATSSSESSESSEFESSSESSPSSSEDEEEVVAREEEEEEEEEEMV 1153
Query: 439 SEQ 441
+E+
Sbjct: 1154 AEE 1156
>gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens]
Length = 247
Score = 37.0 bits (84), Expect = 0.041
Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 292 SNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNL 351
+N +S L + KL R K+ E L++++ ++E + E + D
Sbjct: 38 NNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKF 97
Query: 352 HNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKE 411
N Q+ + + ++ + +I ++ E E RLLK
Sbjct: 98 QNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKL---------------KEEEKRLLKS 142
Query: 412 MGWQEDS-----ENDETCAPLTEDEMREFQVISEQLQKN--GLRKNGILKNGLICDFKFG 464
G +DS E+DE+ + L E + + Q E L + G R G ++ G
Sbjct: 143 -GSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGG-------- 193
Query: 465 PWKNSTFKPTTENDDTETSSSDTSDDDD 492
+ +N+D+E S D DDDD
Sbjct: 194 --------DSDDNEDSEESEIDMEDDDD 213
>gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens]
Length = 413
Score = 37.0 bits (84), Expect = 0.041
Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 292 SNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNL 351
+N +S L + KL R K+ E L++++ ++E + E + D
Sbjct: 204 NNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKF 263
Query: 352 HNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKE 411
N Q+ + + ++ + +I ++ E E RLLK
Sbjct: 264 QNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKL---------------KEEEKRLLKS 308
Query: 412 MGWQEDS-----ENDETCAPLTEDEMREFQVISEQLQKN--GLRKNGILKNGLICDFKFG 464
G +DS E+DE+ + L E + + Q E L + G R G ++ G
Sbjct: 309 -GSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGG-------- 359
Query: 465 PWKNSTFKPTTENDDTETSSSDTSDDDD 492
+ +N+D+E S D DDDD
Sbjct: 360 --------DSDDNEDSEESEIDMEDDDD 379
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 36.6 bits (83), Expect = 0.054
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 16/190 (8%)
Query: 67 RKEKNGWRTHGRNGTENINHRGGY--HGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKE 124
++E WR + R N +R Y G S+SRS +S+ D + R
Sbjct: 137 KREDGKWRDYDRYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNV 196
Query: 125 DKRERKQFEAED---FPSLNPEYEREPNHNKSLAAGVWGLHAQ----THTYPTKKISQAP 177
+ RER +F++E S P PN ++ ++G + + + ++ +++
Sbjct: 197 EHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESW 256
Query: 178 LLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSV-----YKGLV 232
Y + S + + K +D GF V+G+L +G P V ++
Sbjct: 257 SNYYNNHSSSNSFGRNLPPKRRCRDYDERGFCVLGDLCQ--FDHGNDPLVVDEVALPSMI 314
Query: 233 PKPAAPPTKP 242
P P PP P
Sbjct: 315 PFPPPPPGLP 324
>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
sapiens]
Length = 1998
Score = 35.8 bits (81), Expect = 0.091
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 326 KRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQ 385
+R+R ++ + E G EKD+D F S + + + + + N + E +S
Sbjct: 497 RRNRRKKRKQKEQSGGEEKDEDEFQKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQSL 556
Query: 386 I-IRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQK 444
+ IR S F +SL + K++G + D +DE + R+ + ++
Sbjct: 557 LSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVP---RR 613
Query: 445 NGLRKNGIL 453
+G R+N L
Sbjct: 614 HGERRNSNL 622
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 35.8 bits (81), Expect = 0.091
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 325 LKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQ-ERDINRNFDENEIPQENGNASVIS 383
L++D EEE E E GS ++DD + TH RD E+E +E G+ ++
Sbjct: 477 LRKDDSEEEKEKEEDPGSHEEDDESSEQGEKGTHHGSRD-----QEDEEDEEEGHGLSLN 531
Query: 384 QQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQED----SENDETCAPLTEDEMREFQVIS 439
Q+ E E +E +ED E E APL+ D E +
Sbjct: 532 QE-----------------EEEEEDKEEEEEEEDEERREERAEVGAPLSPDHSEEEEEEE 574
Query: 440 EQLQKN 445
E L+++
Sbjct: 575 EGLEED 580
Score = 30.0 bits (66), Expect = 5.0
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 394 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 453
+ +V+SS E H +L+ D E+DE E+E E Q + R +G
Sbjct: 165 EDEVVSS--EHHHHILRHGHRGHDGEDDEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSE 222
Query: 454 KNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 493
++ + D + + E+DD + D DDDDV
Sbjct: 223 EDEDVSDGHHHHGPSHRHQGHEEDDDDDDDDDDDDDDDDV 262
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 35.4 bits (80), Expect = 0.12
Identities = 64/293 (21%), Positives = 113/293 (38%), Gaps = 55/293 (18%)
Query: 94 SSRSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAE---DFPSLNPEYEREPNH 150
SS S SS + S + +++ +D RE K E D + E ++P
Sbjct: 179 SSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKE 238
Query: 151 NKSLAAGVWGLHAQTHTYPTKKISQAPLLEYP-PNPKSRAPR----MLVIKKGNTKDLQL 205
NK P K+ P + + P P S+ P+ +L I G K
Sbjct: 239 NK----------------PLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPS 282
Query: 206 SGFPVVGN--LPSQPVKNGTGPSVYKGLVPKP-----AAPPTKPTQWKSQTKENKVGTSF 258
P+ + L ++ K + +++K P + K + KS K KV
Sbjct: 283 KRPPISDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKV--KI 340
Query: 259 PHESTFGVGNFNAFKSTAKNFS----PSTNSVKE--CNRSNSSSPVDKLNQQPRLTKLTR 312
E++ KST F P+ + V+E ++S+S P + + T
Sbjct: 341 ESETS------EKKKSTLPPFDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSSFTP 394
Query: 313 MRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINR 365
+T ++ L+++ +D +++E+ES E +D N N + ER +NR
Sbjct: 395 SQTRQQGP-LRSIMKDLHSDDNEEES---DEVED------NDNDSEMERPVNR 437
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 35.0 bits (79), Expect = 0.16
Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 229 KGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKE 288
KG P P PP + + + T ++ ++ + + G+ +A ++ + S S+ S K+
Sbjct: 269 KGGPPPPPPPPPRASSKRPATADSPKPSAKKQKKSSSKGSRSAPGTSPRTSSSSSFSDKK 328
Query: 289 CNRSNSSSPVDKL--NQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDD 346
+ SS+ +K+ +PR K + SE + K + + + S + D
Sbjct: 329 PAKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSD 388
Query: 347 DSFNLHNSNSTHQERDINRNFDENEIPQENGNA 379
F ++S R + + E +++ ++
Sbjct: 389 SDFEPSQNHSQGPLRSMVEDLQSEESDEDDSSS 421
>gi|9945318 MAX binding protein [Homo sapiens]
Length = 582
Score = 35.0 bits (79), Expect = 0.16
Identities = 62/246 (25%), Positives = 95/246 (38%), Gaps = 46/246 (18%)
Query: 176 APLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKP 235
APLL P+ K+ P G+ K LQ PV+ P P V L P+
Sbjct: 147 APLL---PDSKATIP-----PNGSPKPLQPLPTPVLTIAPH--------PGVQPQLAPQQ 190
Query: 236 AAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSS 295
PPT T + +E K +S + G+G KN E + N
Sbjct: 191 PPPPTLGTLKLAPAEEVK--SSEQKKRPGGIGTREVHNKLEKNRRAHLKECFETLKRNIP 248
Query: 296 SPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSN 355
+ DK + + L+ +RT + ++++LKR E EHE E R EK L
Sbjct: 249 NVDDK-----KTSNLSVLRTALR--YIQSLKRKEKEYEHEME-RLAREKIATQQRL---- 296
Query: 356 STHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQ 415
+ ++++ D EI +++R + P+ D S+S +E E
Sbjct: 297 -AELKHELSQWMDVLEI-----------DRVLRQTGQPEDDQASTSTASE----GEDNID 340
Query: 416 EDSEND 421
ED E D
Sbjct: 341 EDMEED 346
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.20
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 182 PPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KNGTGPSVYKGL 231
PP P+ R I + D +LS PV NLP Q K GP++
Sbjct: 590 PPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKAMLGPAIPPKA 645
Query: 232 VPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 265
P+PA PP K T W + + +G + P ++T G
Sbjct: 646 TPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.20
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 182 PPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KNGTGPSVYKGL 231
PP P+ R I + D +LS PV NLP Q K GP++
Sbjct: 590 PPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKAMLGPAIPPKA 645
Query: 232 VPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 265
P+PA PP K T W + + +G + P ++T G
Sbjct: 646 TPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo
sapiens]
Length = 834
Score = 34.7 bits (78), Expect = 0.20
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 238 PPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSP 297
PP PT T + T+ P ++ +F+ F ST +P+T+S SN+S+P
Sbjct: 471 PPALPTTTTVTTFSQSLPTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTP 530
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.20
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 182 PPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KNGTGPSVYKGL 231
PP P+ R I + D +LS PV NLP Q K GP++
Sbjct: 590 PPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKAMLGPAIPPKA 645
Query: 232 VPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 265
P+PA PP K T W + + +G + P ++T G
Sbjct: 646 TPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 34.7 bits (78), Expect = 0.20
Identities = 37/219 (16%), Positives = 79/219 (36%), Gaps = 10/219 (4%)
Query: 274 STAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEE 333
S + N S S+NS + SNSS D + + R+D + + D
Sbjct: 818 SDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSS 877
Query: 334 HEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFP 393
+S +E + S + +SNS+ + + N ++ + ++S S S++
Sbjct: 878 DSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSD 937
Query: 394 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 453
++ SS ++ + DS N + + + S+ + +
Sbjct: 938 SSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDS 997
Query: 454 KNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDD 492
+ NS+ + + ++SSD+S+ D
Sbjct: 998 SDS----------SNSSDSSDSSDSSDSSNSSDSSNSSD 1026
Score = 33.9 bits (76), Expect = 0.35
Identities = 76/447 (17%), Positives = 171/447 (38%), Gaps = 35/447 (7%)
Query: 52 GFDSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLH 111
G D++ G P+G E G +G + G G S +S G+ G
Sbjct: 238 GLDNSDGSPSGNGADEDEDEG------SGDDEDEEAGN---GKDSSNNSKGQEGQDHGKE 288
Query: 112 ENNIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTK 171
+++ D+ G+ D +E E ++ P + ++ ++ +AG+ + T+
Sbjct: 289 DDH--DSSIGQNSDSKEYYDPEGKEDPHNEVDGDKTSKSEEN-SAGIPEDNGSQRIEDTQ 345
Query: 172 KISQAPLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLP-SQPVKNGTGPSVYKG 230
K++ N ++ + K K +++ G P GN ++ V G KG
Sbjct: 346 KLNHRESKRVE-NRITKESETHAVGKSQDKGIEIKG-PSSGNRNITKEVGKGNEGKEDKG 403
Query: 231 LVPKPAAPPTKPTQWK-----SQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNS 285
TQ + ++++ G H +T N + + S +F +
Sbjct: 404 QHGMILGKGNVKTQGEVVNIEGPGQKSEPGNKVGHSNTGSDSNSDGYDSY--DFDDKSMQ 461
Query: 286 VKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKD 345
+ N S+ S+ D N + +R S+ K ++ + S + +D
Sbjct: 462 GDDPNSSDESNGNDDANSESDNNSSSRGDASYNSDESK---------DNGNGSDSKGAED 512
Query: 346 DDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAE 405
DDS + ++N++ + N D+N+ ++G S S + +D SS +++
Sbjct: 513 DDSDSTSDTNNSDSNGNGNNGNDDND-KSDSGKGKSDSSDSDSSDSSNSSDSSDSS-DSD 570
Query: 406 HRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGP 465
+ S++D + + ++ + + S+ + + +
Sbjct: 571 SSDSNSSSDSDSSDSDSSDS--SDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSK 628
Query: 466 WKNSTFKPTTENDDTETSSSDTSDDDD 492
++ + +++D ++++SSD+SD+ D
Sbjct: 629 SESDSSDSDSKSDSSDSNSSDSSDNSD 655
Score = 33.5 bits (75), Expect = 0.45
Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 1/220 (0%)
Query: 274 STAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEE 333
S + + S S+NS + SNSS D N + S+ + D
Sbjct: 771 SDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSS 830
Query: 334 HEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFP 393
+S S+ D S + S+S R + N ++ ++ N+S S + +
Sbjct: 831 DSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSN 890
Query: 394 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 453
+D SS ++ + S++ + + S+ + +
Sbjct: 891 SSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDS 950
Query: 454 KNGLICDFKFGPWKNSTFKPTTENDDTETS-SSDTSDDDD 492
N +S + +D +++S SSD+SD D
Sbjct: 951 SNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSD 990
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 34.7 bits (78), Expect = 0.20
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 20/137 (14%)
Query: 240 TKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVD 299
+K K + KE K + P ++ + ++ S S + +RS + SP
Sbjct: 308 SKTRDKKKEDKEKKRSKTPP----------KSYSTARRSRSASRERRRRRSRSGTRSP-- 355
Query: 300 KLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDE-----SRAGSEKDDDSFNLHNS 354
++PR K R+ K K+D+ +E DE S+ KD + S
Sbjct: 356 ---KKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKS 412
Query: 355 NSTHQERDINRNFDENE 371
S + + R++DE E
Sbjct: 413 ESDKDVKQVTRDYDEEE 429
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 34.7 bits (78), Expect = 0.20
Identities = 52/207 (25%), Positives = 67/207 (32%), Gaps = 42/207 (20%)
Query: 58 GRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHA---GKSQGLHENN 114
GR GG F R E G R G +N RGG GG R + G SQ NN
Sbjct: 519 GRGGGGGFQRYENRGPPGGNRGGFQN---RGGGSGGGGNYRGGFNRSGGGGYSQNRWGNN 575
Query: 115 IPDNETGRKE---DKRERKQFEAEDFPSLNPEYEREP---------------NHNKSLAA 156
DN ++ ++Q + P P ++ P +NK+ +
Sbjct: 576 NRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKN--S 633
Query: 157 GVWGLHAQTHTYPTKKISQAPLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPS 216
+ G A T T S PP P P +G G+ P
Sbjct: 634 NIPGSSANTSTPTVSSYS-------PPQPSYSQP---PYNQGGYS----QGYTAPPPPPP 679
Query: 217 QPVKNGTGPSVYKGLVPKPAAPPTKPT 243
P G Y G P P PP PT
Sbjct: 680 PPPAYNYGS--YGGYNPAPYTPPPPPT 704
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 34.7 bits (78), Expect = 0.20
Identities = 52/207 (25%), Positives = 67/207 (32%), Gaps = 42/207 (20%)
Query: 58 GRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHA---GKSQGLHENN 114
GR GG F R E G R G +N RGG GG R + G SQ NN
Sbjct: 619 GRGGGGGFQRYENRGPPGGNRGGFQN---RGGGSGGGGNYRGGFNRSGGGGYSQNRWGNN 675
Query: 115 IPDNETGRKE---DKRERKQFEAEDFPSLNPEYEREP---------------NHNKSLAA 156
DN ++ ++Q + P P ++ P +NK+ +
Sbjct: 676 NRDNNNSNNRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKN--S 733
Query: 157 GVWGLHAQTHTYPTKKISQAPLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPS 216
+ G A T T S PP P P +G G+ P
Sbjct: 734 NIPGSSANTSTPTVSSYS-------PPQPSYSQP---PYNQGGYS----QGYTAPPPPPP 779
Query: 217 QPVKNGTGPSVYKGLVPKPAAPPTKPT 243
P G Y G P P PP PT
Sbjct: 780 PPPAYNYGS--YGGYNPAPYTPPPPPT 804
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 34.7 bits (78), Expect = 0.20
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 6/135 (4%)
Query: 243 TQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLN 302
T+ +S K++K G E T + K K+ SPS S + S SP +
Sbjct: 192 TRHRSDKKKSKGGIEIVKEKT----TRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRR 247
Query: 303 QQPRLTKLTRMRTDKKSEFLKALKRDRVEEE--HEDESRAGSEKDDDSFNLHNSNSTHQE 360
Q ++ K DK K+ +DR + +E SR +K +L + +
Sbjct: 248 SQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRS 307
Query: 361 RDINRNFDENEIPQE 375
R R +E +E
Sbjct: 308 RSKERKSKRSETDKE 322
Score = 32.7 bits (73), Expect = 0.77
Identities = 53/298 (17%), Positives = 114/298 (38%), Gaps = 27/298 (9%)
Query: 96 RSRSSIFHAGKSQGL-HENNIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSL 154
R +S I + +S+ ++ P + G+ +D+R R +++ S E ++E KS
Sbjct: 274 RKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSR----SKERKSKRSETDKEKKPIKS- 328
Query: 155 AAGVWGLHAQTHTYPTKKISQAPLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNL 214
P+K S P R+P+ + + S P++ +
Sbjct: 329 --------------PSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDR 374
Query: 215 PSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGT--SFPHESTFGVGNFNAF 272
S+ K+ PS + L P A + + + + ++ + + P + +
Sbjct: 375 RSKQSKS---PS--RTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDILSRRERSKD 429
Query: 273 KSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEE 332
S +SP+ + R S SP+ + R ++ R R + + +R R
Sbjct: 430 ASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRG 489
Query: 333 EHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSS 390
SR+ ++D +L QE + N ++ ++ +E+ A + ++I R +
Sbjct: 490 GRRRRSRSKVKEDKFKGSLSEGMKVEQESSSDDNLEDFDVEEEDEEALIEQRRIQRQA 547
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 34.7 bits (78), Expect = 0.20
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 238 PPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSP 297
PP PT T + T+ P ++ +F+ F ST +P+T+S SN+S+P
Sbjct: 622 PPALPTTTTVTTFSQSLPTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTP 681
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 34.7 bits (78), Expect = 0.20
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 238 PPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSP 297
PP PT T + T+ P ++ +F+ F ST +P+T+S SN+S+P
Sbjct: 622 PPALPTTTTVTTFSQSLHTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTP 681
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 34.7 bits (78), Expect = 0.20
Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 14/195 (7%)
Query: 122 RKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKISQAPLLEY 181
++++ ++++ E ++ E R P KS + + + S++P
Sbjct: 146 KQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPR--- 202
Query: 182 PPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPS-VYKGLVPKPAAPPT 240
KSR+P KK T +L V V+ T S + K P+P P
Sbjct: 203 -HRTKSRSPSPAPEKKEKTPELPEPSVKV----KEPSVQEATSTSDILKVPKPEPIPEPK 257
Query: 241 KPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDK 300
+P+ K+ KE + + P + +S ++ SPS + +RS S S +
Sbjct: 258 EPSPEKNSKKEKEKEKTRPRSRSRSKS-----RSRTRSRSPSHTRPRRRHRSRSRSYSPR 312
Query: 301 LNQQPRLTKLTRMRT 315
PR R RT
Sbjct: 313 RRPSPRRRPSPRRRT 327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,999,390
Number of Sequences: 37866
Number of extensions: 1140249
Number of successful extensions: 4865
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 4505
Number of HSP's gapped (non-prelim): 464
length of query: 493
length of database: 18,247,518
effective HSP length: 106
effective length of query: 387
effective length of database: 14,233,722
effective search space: 5508450414
effective search space used: 5508450414
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.