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Search of human proteins with 113205077
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113205077 amyotrophic lateral sclerosis 2 (juvenile)
chromosome region, candidate 4 isoform b [Homo sapiens]
(400 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113205077 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 780 0.0
gi|113205075 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 768 0.0
gi|110349719 titin isoform N2-A [Homo sapiens] 41 0.002
gi|224458301 family with sequence similarity 186, member A [Homo... 40 0.004
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 40 0.004
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 40 0.004
gi|116268091 PHD finger protein 23 [Homo sapiens] 39 0.006
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 39 0.006
gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens] 37 0.024
gi|169204941 PREDICTED: similar to Nucleolar protein 5A [Homo sa... 37 0.032
gi|169205573 PREDICTED: similar to Nucleolar protein 5A [Homo sa... 37 0.032
gi|169203848 PREDICTED: hypothetical protein [Homo sapiens] 37 0.032
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 37 0.032
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 37 0.032
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 37 0.032
gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens] 37 0.041
gi|24497513 homeobox A3 isoform a [Homo sapiens] 36 0.054
gi|13562112 homeobox A3 isoform a [Homo sapiens] 36 0.054
gi|4505257 moesin [Homo sapiens] 36 0.054
gi|19913406 DNA topoisomerase II, alpha isozyme [Homo sapiens] 36 0.070
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 36 0.070
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 36 0.070
gi|148839382 ring finger protein 169 [Homo sapiens] 36 0.070
gi|156231049 zinc finger, AN1-type domain 5 [Homo sapiens] 36 0.070
gi|156231047 zinc finger, AN1-type domain 5 [Homo sapiens] 36 0.070
gi|5174755 zinc finger, AN1-type domain 5 [Homo sapiens] 36 0.070
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens] 36 0.070
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 36 0.070
gi|225007652 processing of precursor 1 [Homo sapiens] 35 0.12
gi|225007650 processing of precursor 1 [Homo sapiens] 35 0.12
>gi|113205077 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 4 isoform b [Homo sapiens]
Length = 400
Score = 780 bits (2014), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MGKNPVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPS 60
MGKNPVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPS
Sbjct: 1 MGKNPVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPS 60
Query: 61 TKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPR 120
TKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPR
Sbjct: 61 TKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPR 120
Query: 121 RKTKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQ 180
RKTKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQ
Sbjct: 121 RKTKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQ 180
Query: 181 AADRSELIKTTENIDVSMDVKPSWTTRDVALTVHRAFRMIGLFSHGFLAGCAVWNIVVIY 240
AADRSELIKTTENIDVSMDVKPSWTTRDVALTVHRAFRMIGLFSHGFLAGCAVWNIVVIY
Sbjct: 181 AADRSELIKTTENIDVSMDVKPSWTTRDVALTVHRAFRMIGLFSHGFLAGCAVWNIVVIY 240
Query: 241 VLAGDQLSNLSNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIDFAKISVAIRNFLALDP 300
VLAGDQLSNLSNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIDFAKISVAIRNFLALDP
Sbjct: 241 VLAGDQLSNLSNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIDFAKISVAIRNFLALDP 300
Query: 301 TALASFLYFTALILSLSQQMTSDRIHLYTPSSVNGSLWEAGIEEQILQPWIVVNLVVALL 360
TALASFLYFTALILSLSQQMTSDRIHLYTPSSVNGSLWEAGIEEQILQPWIVVNLVVALL
Sbjct: 301 TALASFLYFTALILSLSQQMTSDRIHLYTPSSVNGSLWEAGIEEQILQPWIVVNLVVALL 360
Query: 361 VGLSWLFLSYRPGMDLSEELMFSSEVEEYPDKEKEIKASS 400
VGLSWLFLSYRPGMDLSEELMFSSEVEEYPDKEKEIKASS
Sbjct: 361 VGLSWLFLSYRPGMDLSEELMFSSEVEEYPDKEKEIKASS 400
>gi|113205075 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 4 isoform a [Homo sapiens]
Length = 408
Score = 768 bits (1982), Expect = 0.0
Identities = 394/395 (99%), Positives = 395/395 (100%)
Query: 6 VRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELK 65
+RPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELK
Sbjct: 14 LRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELK 73
Query: 66 EHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKTKK 125
EHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKTKK
Sbjct: 74 EHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKTKK 133
Query: 126 TQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQAADRS 185
TQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQAADRS
Sbjct: 134 TQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQAADRS 193
Query: 186 ELIKTTENIDVSMDVKPSWTTRDVALTVHRAFRMIGLFSHGFLAGCAVWNIVVIYVLAGD 245
ELIKTTENIDVSMDVKPSWTTRDVALTVHRAFRMIGLFSHGFLAGCAVWNIVVIYVLAGD
Sbjct: 194 ELIKTTENIDVSMDVKPSWTTRDVALTVHRAFRMIGLFSHGFLAGCAVWNIVVIYVLAGD 253
Query: 246 QLSNLSNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIDFAKISVAIRNFLALDPTALAS 305
QLSNLSNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIDFAKISVAIRNFLALDPTALAS
Sbjct: 254 QLSNLSNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIDFAKISVAIRNFLALDPTALAS 313
Query: 306 FLYFTALILSLSQQMTSDRIHLYTPSSVNGSLWEAGIEEQILQPWIVVNLVVALLVGLSW 365
FLYFTALILSLSQQMTSDRIHLYTPSSVNGSLWEAGIEEQILQPWIVVNLVVALLVGLSW
Sbjct: 314 FLYFTALILSLSQQMTSDRIHLYTPSSVNGSLWEAGIEEQILQPWIVVNLVVALLVGLSW 373
Query: 366 LFLSYRPGMDLSEELMFSSEVEEYPDKEKEIKASS 400
LFLSYRPGMDLSEELMFSSEVEEYPDKEKEIKASS
Sbjct: 374 LFLSYRPGMDLSEELMFSSEVEEYPDKEKEIKASS 408
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 41.2 bits (95), Expect = 0.002
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 7/160 (4%)
Query: 3 KNPVRPPRALPPVPS--QDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPS 60
K PP +P VP ++ +P+ PKK+KP P + + E
Sbjct: 9969 KKKEAPPAKVPEVPKKPEEKVPVLIPKKEKPPPAKVPEVPKKPVPEEKVPVPVPKKVEAP 10028
Query: 61 TKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPR 120
++ E P+ PV ++ P ++E + L+ E P + V P
Sbjct: 10029 PAKVPEVPKKPVPEKKVPVPAPKKVEAPPAKVPEVPKKLIPEEK--KPTPVPKKVEAPPP 10086
Query: 121 RKTKKTQPAELQYA---NELGVEDEDIITDEQTTVEQQSV 157
+ KK +P + A E + +E+I+ +E+ E++ V
Sbjct: 10087 KVPKKREPVPVPVALPQEEEVLFEEEIVPEEEVLPEEEEV 10126
Score = 31.6 bits (70), Expect = 1.3
Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 25/157 (15%)
Query: 5 PVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKEL 64
P + P P +P P +P+ + K P +A P G + K
Sbjct: 11004 PTKVPEIKPAIPLPAPEPKPKPEAEVKTIKPPPVEPEPTPIAAPV-TVPVVGKKAEAKAP 11062
Query: 65 KEH---PEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRR 121
KE P+ P++ KKT P+E E + S +P +EA
Sbjct: 11063 KEEAAKPKGPIKGVPKKTPSPIEAERRKLRPGSGGE-----------KPPDEAPF----- 11106
Query: 122 KTKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVF 158
T + + L++ E+ +DII E V ++F
Sbjct: 11107 -TYQLKAVPLKFVKEI----KDIILTESEFVGSSAIF 11138
Score = 29.6 bits (65), Expect = 5.0
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 11/128 (8%)
Query: 3 KNPVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRP--SEGNEPS 60
K P PP +P VP + + +P P +P E + A E +P
Sbjct: 10766 KKPEVPPAKVPEVPKKPVLE-EKPAVPVPERAESPPPEVYEEPEEIAPEEEIAPEEEKPV 10824
Query: 61 TKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPR 120
+E PE P +P E + +KK + + E EP E VI+KP+
Sbjct: 10825 PVAEEEEPEVP------PPAVPEEPKKIIPEKKVPV--IKKPEAPPPKEPEPEKVIEKPK 10876
Query: 121 RKTKKTQP 128
K + P
Sbjct: 10877 LKPRPPPP 10884
Score = 28.9 bits (63), Expect = 8.6
Identities = 36/194 (18%), Positives = 76/194 (39%), Gaps = 27/194 (13%)
Query: 5 PVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKEL 64
P + P A + + +P PKK+K P ++P + K +
Sbjct: 9577 PAKVPEAPKKIVPEKKVPAPVPKKEKVPPPKVPEEP----------KKPVPEKKVPPKVI 9626
Query: 65 KEHPEAPVQRRQKKTRLPLELET-SSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKT 123
K P + ++ ++ E + + KK + E A P E+ + KP+R
Sbjct: 9627 KMEEPLPAKVTERHMQITQEEKVLVAVTKKEAPPKARVPEEPKRAVPEEKVLKLKPKR-- 9684
Query: 124 KKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFV--EKSRRFQA 181
++ PA++ + ++ +E+ ++E AP QP+ +V + EK R +
Sbjct: 9685 EEEPPAKVTEFR------KRVVKEEKVSIE------APKREPQPIKEVTIMEEKERAYTL 9732
Query: 182 ADRSELIKTTENID 195
+ + ++ E +
Sbjct: 9733 EEEAVSVQREEEYE 9746
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 55 EGNEPSTKELKEHPEAPVQRRQKKTRLP---LELETSSTQKKSSSSSLLRNENGIDAEPA 111
E + +T + E E QR Q++ LP L+ TQK + LL ENG +
Sbjct: 891 EEQKQATPKQAEQEEKQKQRGQEEEELPKSSLQRLEEGTQKMKTQGLLLEKENGQMRQIQ 950
Query: 112 EEAVIQKPRRKTKKTQPAELQYANELGVED--EDIITDEQTTVE-------QQSVFTAPT 162
+EA P R+ +K + + E G+ED I T +Q ++ ++ V P
Sbjct: 951 KEAKHLGPHRRREKGKEKQ---KPERGLEDLERQIKTKDQMQMKETQPKELEKMVIQTPM 1007
Query: 163 GISQPVGKVFVEKSRRFQAADRSELIKTTENI 194
+S V + R ++ + +KT EN+
Sbjct: 1008 TLSPRWKSVLKDVQRSYEGKEFQRNLKTLENL 1039
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 40.0 bits (92), Expect = 0.004
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 22/195 (11%)
Query: 22 PLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRL 81
P S P KK P S + + + T R P N+ TK++ E E + + +
Sbjct: 69 PTSPPSSKKA----PPPSGASQTIKSTTKRSPKPPNKKKTKKVIESEEITEEHSVSENQ- 123
Query: 82 PLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQK------PRRKTKKTQPAELQYAN 135
E+SS+ SSSSS +R A + +K + +TKK + +
Sbjct: 124 ----ESSSSSSSSSSSSTIRKIKSSKNSAANRELQKKLKVKDNKKNRTKKKPTPKPPVVD 179
Query: 136 ELGV----EDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQAADRSELIKTT 191
E G D + T + +T + V T+P K + +D S+ T
Sbjct: 180 EAGSGLDNGDFKVTTPDTSTTQHNKVSTSP---KITTAKPINPRPSLPPNSDTSKETSLT 236
Query: 192 ENIDVSMDVKPSWTT 206
N + +++ K + TT
Sbjct: 237 VNKETTVETKETTTT 251
Score = 32.7 bits (73), Expect = 0.60
Identities = 45/200 (22%), Positives = 75/200 (37%), Gaps = 28/200 (14%)
Query: 26 PKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRLPLEL 85
PK+ P T PA + +G A T + P+ P+T + AP + T+ P
Sbjct: 721 PKEPAPTTPKEPAPTTPKGTAPTTLKEPA----PTTPK----KPAPKELAPTTTKGP--- 769
Query: 86 ETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKTKKTQPAELQYANELGVEDEDII 145
TS+T K + ++ EPA +KP T +T P +
Sbjct: 770 -TSTTSDKPAPTTPKETAPTTPKEPA-PTTPKKPAPTTPETPPPTTSEVS------TPTT 821
Query: 146 TDEQTTVEQQSVFTAPTGISQPVGKVFVEKSR-------RFQAADRSELIKTTENIDVSM 198
T E TT+ + + P ++P K + + AA + E+ T ++
Sbjct: 822 TKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPTTKTPAATKPEMTTTAKDKTTER 881
Query: 199 DVK--PSWTTRDVALTVHRA 216
D++ P TT +T A
Sbjct: 882 DLRTTPETTTAAPKMTKETA 901
Score = 32.0 bits (71), Expect = 1.0
Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 11/165 (6%)
Query: 5 PVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKE- 63
P P P P + + + P+K P T PA + E LA T P+ P+T E
Sbjct: 569 PTTPKETAPTTPKK--LTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPT----PTTPEE 622
Query: 64 -LKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRK 122
P+A K+ E + T K + + + + +++P
Sbjct: 623 PAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPT 682
Query: 123 TKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQP 167
T K +PA + A E D+ + TAPT +P
Sbjct: 683 TPK-KPAPKELAPTTTKEPTSTTCDKPAPTTPKG--TAPTTPKEP 724
Score = 30.8 bits (68), Expect = 2.3
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 3/121 (2%)
Query: 8 PPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEH 67
P P P+ + PK+ P T PA + + A T + P+ +TK
Sbjct: 334 PTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPA---PTTTKSAPTT 390
Query: 68 PEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKTKKTQ 127
P+ P KK E + T K + + + EPA + KK
Sbjct: 391 PKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPA 450
Query: 128 P 128
P
Sbjct: 451 P 451
Score = 30.0 bits (66), Expect = 3.9
Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 3 KNPVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTK 62
K P P ++ P + PKK P T PA + + T + P+ P+TK
Sbjct: 377 KEPAPTTTKSAPTTPKEPAPTT-PKKPAPTTPKEPAPTTPKEPTPTTPKEPA----PTTK 431
Query: 63 E-LKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRR 121
E P+ P KK E + T K + + + + + +
Sbjct: 432 EPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPT 491
Query: 122 KTKKTQPAELQYANELGVEDEDIITDE--QTTVEQQSVFT----APTGISQP 167
TK+ P + A E T E TT ++ + T APT +P
Sbjct: 492 TTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEP 543
Score = 28.9 bits (63), Expect = 8.6
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 5 PVRPPRALP--PVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRR--PSEGNEPS 60
P P P P P+ + + PK+ P PA + + A T + P+ EPS
Sbjct: 415 PKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPS 474
Query: 61 TKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEA--VIQK 118
KE + T+ P T S S + P E A +K
Sbjct: 475 PTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKK 534
Query: 119 PRRKTKKTQPA 129
P T K +PA
Sbjct: 535 PAPTTPK-EPA 544
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 40.0 bits (92), Expect = 0.004
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 22/195 (11%)
Query: 22 PLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRL 81
P S P KK P S + + + T R P N+ TK++ E E + + +
Sbjct: 110 PTSPPSSKKA----PPPSGASQTIKSTTKRSPKPPNKKKTKKVIESEEITEEHSVSENQ- 164
Query: 82 PLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQK------PRRKTKKTQPAELQYAN 135
E+SS+ SSSSS +R A + +K + +TKK + +
Sbjct: 165 ----ESSSSSSSSSSSSTIRKIKSSKNSAANRELQKKLKVKDNKKNRTKKKPTPKPPVVD 220
Query: 136 ELGV----EDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQAADRSELIKTT 191
E G D + T + +T + V T+P K + +D S+ T
Sbjct: 221 EAGSGLDNGDFKVTTPDTSTTQHNKVSTSP---KITTAKPINPRPSLPPNSDTSKETSLT 277
Query: 192 ENIDVSMDVKPSWTT 206
N + +++ K + TT
Sbjct: 278 VNKETTVETKETTTT 292
Score = 32.7 bits (73), Expect = 0.60
Identities = 45/200 (22%), Positives = 75/200 (37%), Gaps = 28/200 (14%)
Query: 26 PKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRLPLEL 85
PK+ P T PA + +G A T + P+ P+T + AP + T+ P
Sbjct: 762 PKEPAPTTPKEPAPTTPKGTAPTTLKEPA----PTTPK----KPAPKELAPTTTKGP--- 810
Query: 86 ETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKTKKTQPAELQYANELGVEDEDII 145
TS+T K + ++ EPA +KP T +T P +
Sbjct: 811 -TSTTSDKPAPTTPKETAPTTPKEPA-PTTPKKPAPTTPETPPPTTSEVS------TPTT 862
Query: 146 TDEQTTVEQQSVFTAPTGISQPVGKVFVEKSR-------RFQAADRSELIKTTENIDVSM 198
T E TT+ + + P ++P K + + AA + E+ T ++
Sbjct: 863 TKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPTTKTPAATKPEMTTTAKDKTTER 922
Query: 199 DVK--PSWTTRDVALTVHRA 216
D++ P TT +T A
Sbjct: 923 DLRTTPETTTAAPKMTKETA 942
Score = 32.0 bits (71), Expect = 1.0
Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 11/165 (6%)
Query: 5 PVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKE- 63
P P P P + + + P+K P T PA + E LA T P+ P+T E
Sbjct: 610 PTTPKETAPTTPKK--LTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPT----PTTPEE 663
Query: 64 -LKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRK 122
P+A K+ E + T K + + + + +++P
Sbjct: 664 PAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPT 723
Query: 123 TKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQP 167
T K +PA + A E D+ + TAPT +P
Sbjct: 724 TPK-KPAPKELAPTTTKEPTSTTCDKPAPTTPKG--TAPTTPKEP 765
Score = 30.8 bits (68), Expect = 2.3
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 3/121 (2%)
Query: 8 PPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEH 67
P P P+ + PK+ P T PA + + A T + P+ +TK
Sbjct: 375 PTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPA---PTTTKSAPTT 431
Query: 68 PEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKTKKTQ 127
P+ P KK E + T K + + + EPA + KK
Sbjct: 432 PKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPA 491
Query: 128 P 128
P
Sbjct: 492 P 492
Score = 30.0 bits (66), Expect = 3.9
Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 12/172 (6%)
Query: 3 KNPVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTK 62
K P P ++ P + PKK P T PA + + T + P+ P+TK
Sbjct: 418 KEPAPTTTKSAPTTPKEPAPTT-PKKPAPTTPKEPAPTTPKEPTPTTPKEPA----PTTK 472
Query: 63 E-LKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRR 121
E P+ P KK E + T K + + + + + +
Sbjct: 473 EPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPT 532
Query: 122 KTKKTQPAELQYANELGVEDEDIITDE--QTTVEQQSVFT----APTGISQP 167
TK+ P + A E T E TT ++ + T APT +P
Sbjct: 533 TTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEP 584
Score = 28.9 bits (63), Expect = 8.6
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 5 PVRPPRALP--PVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRR--PSEGNEPS 60
P P P P P+ + + PK+ P PA + + A T + P+ EPS
Sbjct: 456 PKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPS 515
Query: 61 TKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEA--VIQK 118
KE + T+ P T S S + P E A +K
Sbjct: 516 PTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKK 575
Query: 119 PRRKTKKTQPA 129
P T K +PA
Sbjct: 576 PAPTTPK-EPA 585
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 39.3 bits (90), Expect = 0.006
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 7 RPPRALPPVP-SQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELK 65
RPP AL PVP SQ D LS P +KK R + G RP+ G+ +K
Sbjct: 159 RPPAALTPVPLSQGD--LSHPPRKKDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSRIK 216
Query: 66 EHPEAPVQRRQKKTRLP 82
+ + +++ ++ RLP
Sbjct: 217 KSKKRKLKKAERGDRLP 233
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 39.3 bits (90), Expect = 0.006
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 9 PRALP-PVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEH 67
P+ P V +Q P +P + P+ N A++S + ++ SE + +
Sbjct: 185 PKITPVTVKAQTKAP-PKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAAT----- 238
Query: 68 PEAPVQRRQKKTRLPLELETSSTQKKSSSSSL-----------LRNENG-------IDAE 109
P+ V ++Q + P++ T+ T+K SSS ++N+ G A
Sbjct: 239 PKKTVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAP 298
Query: 110 PAEEAV-IQKPRRKTKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPV 168
P ++++ Q P++ +K QP E ++E ++ D ++E+ ++V + T P
Sbjct: 299 PPKKSLGTQPPKKAVEKQQPVE---SSEDSSDESDSSSEEEKKPPTKAVVSKAT-TKPPP 354
Query: 169 GKVFVEKSRRFQAADRSELIKTTENIDVSMDVKPSWTTRD 208
K E S +D SE D KP+ TT++
Sbjct: 355 AKKAAESSSDSSDSDSSE--------DDEAPSKPAGTTKN 386
Score = 28.9 bits (63), Expect = 8.6
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 45 LAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQ----KKTRLPLELETSSTQKKSSSSSLL 100
+A+ A ++ S + + E +E + P ++ K+ LP + K S SSS
Sbjct: 74 VAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLP---PGKAAAKASESSSSE 130
Query: 101 RNENGIDAEPAEEAVIQK---PRRKTKKTQPAELQYANELGVEDEDIITDEQTTVEQQSV 157
+ + D E ++ +QK P+ K K P + + ++ D D ++++ Q+
Sbjct: 131 ESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSD----SDSDSSSEDEPPKNQKPK 186
Query: 158 FTAPTGISQ----PVGKVFVEKSRRFQAADRSELIKTTENIDVSMDVKPSWTTR 207
T T +Q P K +AA S ++ + D S + K + T +
Sbjct: 187 ITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK 240
>gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens]
Length = 1123
Score = 37.4 bits (85), Expect = 0.024
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 25 RPKKKKPRTKNTPASASLEGLAQTAG-----RRPSEGNEPSTKELKEHPEAPVQRRQKKT 79
R +KKK R ++T ASA EG Q RR + P+ + +E P Q+
Sbjct: 844 RKRKKKKRPEDTAASALQEGQTQRQPGSPMYRREGQAQLPAVRR-QEDGTQPQVNGQQVG 902
Query: 80 RLPLELETSSTQKKSSSSSLLRNENGIDAEPAE-----------EAVIQKPRRKTKKTQP 128
+ SS +++ + L E G+ +P EA+ + PR+K KK +
Sbjct: 903 CVTDGHHASSRKRRRKGAEGLGEEGGLHQDPLRHSCSPMGDGDPEAMEESPRKKKKKKRK 962
Query: 129 AELQYANE 136
E Q A E
Sbjct: 963 QETQRAVE 970
>gi|169204941 PREDICTED: similar to Nucleolar protein 5A [Homo
sapiens]
Length = 166
Score = 37.0 bits (84), Expect = 0.032
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 3 KNPVRPPRALPPVPSQD-DIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPST 61
K + P+ +P ++D I S+PKKKK +K S+ LE A + + + P T
Sbjct: 54 KKKKQKPQEVPQEKTEDPSISFSKPKKKKSFSKEELMSSDLEETAGSTSLLKRKKSSPKT 113
Query: 62 KELKEHPEAPVQR-RQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEE 113
+ + + EA + +KKT+ E SS ++++ S + E E+
Sbjct: 114 ETVNDPEEAGNRSVSKKKTKFSKEEPVSSGPEEAAGSKSSSKKKMFHKEAQED 166
>gi|169205573 PREDICTED: similar to Nucleolar protein 5A [Homo
sapiens]
Length = 166
Score = 37.0 bits (84), Expect = 0.032
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 3 KNPVRPPRALPPVPSQD-DIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPST 61
K + P+ +P ++D I S+PKKKK +K S+ LE A + + + P T
Sbjct: 54 KKKKQKPQEVPQEKTEDPSISFSKPKKKKSFSKEELMSSDLEETAGSTSLLKRKKSSPKT 113
Query: 62 KELKEHPEAPVQR-RQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEE 113
+ + + EA + +KKT+ E SS ++++ S + E E+
Sbjct: 114 ETVNDPEEAGNRSVSKKKTKFSKEEPVSSGPEEAAGSKSSSKKKMFHKEAQED 166
>gi|169203848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 37.0 bits (84), Expect = 0.032
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 3 KNPVRPPRALPPVPSQD-DIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPST 61
K + P+ +P ++D I S+PKKKK +K S+ LE A + + + P T
Sbjct: 54 KKKKQKPQEVPQEKTEDPSISFSKPKKKKSFSKEELMSSDLEETAGSTSLLKRKKSSPKT 113
Query: 62 KELKEHPEAPVQR-RQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEE 113
+ + + EA + +KKT+ E SS ++++ S + E E+
Sbjct: 114 ETVNDPEEAGNRSVSKKKTKFSKEEPVSSGPEEAAGSKSSSKKKMFHKEAQED 166
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 37.0 bits (84), Expect = 0.032
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 46 AQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENG 105
A ++ +E EP +E +E P ++RQ + ELE +++ +++ +
Sbjct: 1255 ADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQ-ELEEPEPEEEEDAAAETAQNDD 1313
Query: 106 IDAEPAEEAVIQKPRRKTKKTQPAELQYANELGVEDEDIITDEQTTVEQ 154
DA+ ++ ++ ++K + QP E GV++ + + Q + E+
Sbjct: 1314 HDADDEDDGHLESTKKKELEEQPTREDVKEEPGVQESFLDANMQKSREK 1362
Score = 29.3 bits (64), Expect = 6.6
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 41 SLEGLAQTAGRRPSEGNEPSTKELKEHPEA-PVQRRQKKTRLPLEL-ETSSTQKKSSSSS 98
S +G RR SEG EP +LK+ PEA + + RLP E + S S
Sbjct: 928 SQDGKPDLPKRRLSEGVEPWRGQLKKSPEALKCRLTEGSERLPRRYSEGDRAVLRGFSES 987
Query: 99 LLRNENGIDAEPAEEAVIQKPRRKTKK 125
E + ++ KP K KK
Sbjct: 988 SEEEEEPESPRSSSPPILTKPTLKRKK 1014
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 37.0 bits (84), Expect = 0.032
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 46 AQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENG 105
A ++ +E EP +E +E P ++RQ + ELE +++ +++ +
Sbjct: 1255 ADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQ-ELEEPEPEEEEDAAAETAQNDD 1313
Query: 106 IDAEPAEEAVIQKPRRKTKKTQPAELQYANELGVEDEDIITDEQTTVEQ 154
DA+ ++ ++ ++K + QP E GV++ + + Q + E+
Sbjct: 1314 HDADDEDDGHLESTKKKELEEQPTREDVKEEPGVQESFLDANMQKSREK 1362
Score = 29.3 bits (64), Expect = 6.6
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 41 SLEGLAQTAGRRPSEGNEPSTKELKEHPEA-PVQRRQKKTRLPLEL-ETSSTQKKSSSSS 98
S +G RR SEG EP +LK+ PEA + + RLP E + S S
Sbjct: 928 SQDGKPDLPKRRLSEGVEPWRGQLKKSPEALKCRLTEGSERLPRRYSEGDRAVLRGFSES 987
Query: 99 LLRNENGIDAEPAEEAVIQKPRRKTKK 125
E + ++ KP K KK
Sbjct: 988 SEEEEEPESPRSSSPPILTKPTLKRKK 1014
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 37.0 bits (84), Expect = 0.032
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 46 AQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENG 105
A ++ +E EP +E +E P ++RQ + ELE +++ +++ +
Sbjct: 1255 ADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQ-ELEEPEPEEEEDAAAETAQNDD 1313
Query: 106 IDAEPAEEAVIQKPRRKTKKTQPAELQYANELGVEDEDIITDEQTTVEQ 154
DA+ ++ ++ ++K + QP E GV++ + + Q + E+
Sbjct: 1314 HDADDEDDGHLESTKKKELEEQPTREDVKEEPGVQESFLDANMQKSREK 1362
Score = 29.3 bits (64), Expect = 6.6
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 41 SLEGLAQTAGRRPSEGNEPSTKELKEHPEA-PVQRRQKKTRLPLEL-ETSSTQKKSSSSS 98
S +G RR SEG EP +LK+ PEA + + RLP E + S S
Sbjct: 928 SQDGKPDLPKRRLSEGVEPWRGQLKKSPEALKCRLTEGSERLPRRYSEGDRAVLRGFSES 987
Query: 99 LLRNENGIDAEPAEEAVIQKPRRKTKK 125
E + ++ KP K KK
Sbjct: 988 SEEEEEPESPRSSSPPILTKPTLKRKK 1014
>gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens]
Length = 810
Score = 36.6 bits (83), Expect = 0.041
Identities = 46/194 (23%), Positives = 74/194 (38%), Gaps = 20/194 (10%)
Query: 22 PLSRPKKKKPRTKNTPASASLE---------GLAQTAGRRPSEGNEPSTKELKEHPEAPV 72
P+ P+K+ RT + S + L + G+R S LK +
Sbjct: 248 PVPGPEKENVRTVVRTVTLSTKQGEEPLVRLSLTERLGKRKFSAGGDSDPPLKR---SLA 304
Query: 73 QRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRR----KTKKTQP 128
QR KK P E T KK+ S L+ G+ A+P E K + K +
Sbjct: 305 QRLGKKVEAP-ETNIDKTPKKAQVSKSLKERLGMSADPDNEDATDKVNKVGEIHVKTLEE 363
Query: 129 AELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGIS---QPVGKVFVEKSRRFQAADRS 185
L+ A++ E + + E + S A + + + +V EK R Q A+R
Sbjct: 364 ILLERASQKRGELQTKLKTEGPSKTDDSTSGARSSSTIRIKTFSEVLAEKKHRQQEAERQ 423
Query: 186 ELIKTTENIDVSMD 199
+ K T I + +D
Sbjct: 424 KSKKDTTCIKLKID 437
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 36.2 bits (82), Expect = 0.054
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 13/134 (9%)
Query: 1 MGKNPVRPP--RALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNE 58
+G+ P+ PP +A PP P Q P +P P P+SAS Q A P+ N
Sbjct: 85 LGEPPLHPPPPQAAPPAP-QPPQPAPQPPAPTPAAPPPPSSAS---PPQNASNNPTPANA 140
Query: 59 PSTKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQK 118
+ L A K P E+ K+ +SSS D P +A ++
Sbjct: 141 AKSPLLNSPTVA-------KQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKR 193
Query: 119 PRRKTKKTQPAELQ 132
R Q EL+
Sbjct: 194 ARTAYTSAQLVELE 207
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 36.2 bits (82), Expect = 0.054
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 13/134 (9%)
Query: 1 MGKNPVRPP--RALPPVPSQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNE 58
+G+ P+ PP +A PP P Q P +P P P+SAS Q A P+ N
Sbjct: 85 LGEPPLHPPPPQAAPPAP-QPPQPAPQPPAPTPAAPPPPSSAS---PPQNASNNPTPANA 140
Query: 59 PSTKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQK 118
+ L A K P E+ K+ +SSS D P +A ++
Sbjct: 141 AKSPLLNSPTVA-------KQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKR 193
Query: 119 PRRKTKKTQPAELQ 132
R Q EL+
Sbjct: 194 ARTAYTSAQLVELE 207
>gi|4505257 moesin [Homo sapiens]
Length = 577
Score = 36.2 bits (82), Expect = 0.054
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 62 KELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRR 121
K+++E + Q +++TR LELE + +S + L + +AE A+EA++Q R
Sbjct: 352 KQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEKLAKERQ--EAEEAKEALLQASRD 409
Query: 122 KTKKTQPAELQYA 134
+ K + L+ A
Sbjct: 410 QKKTQEQLALEMA 422
>gi|19913406 DNA topoisomerase II, alpha isozyme [Homo sapiens]
Length = 1531
Score = 35.8 bits (81), Expect = 0.070
Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 30/199 (15%)
Query: 7 RPPRALPPVPSQDDIPLSRPKKKKPRTKNTPAS-----ASLEGLAQTAGRRPSEGNEPST 61
R R +P + + + KKK + +NT S LEGL Q ++ + EP T
Sbjct: 1215 RGQRVIPRITIEMKAEAEKKNKKKIKNENTEGSPQEDGVELEGLKQRLEKK--QKREPGT 1272
Query: 62 KELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRR 121
K K+ A ++ K R P S S +E+ D P E +PRR
Sbjct: 1273 KTKKQTTLAFKPIKKGKKRNPW---------SDSESDRSSDESNFDVPPRE----TEPRR 1319
Query: 122 KTKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKSRRFQA 181
KT ++ +L DED ++ T ++ V P+ S P K + S + +
Sbjct: 1320 AATKT-----KFTMDLD-SDEDFSDFDEKTDDEDFV---PSDASPPKTKTSPKLSNK-EL 1369
Query: 182 ADRSELIKTTENIDVSMDV 200
+ ++ E DV V
Sbjct: 1370 KPQKSVVSDLEADDVKGSV 1388
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 35.8 bits (81), Expect = 0.070
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 1 MGKNPVRPPRALPPVPSQDDIPLSRPKKKKPRTKNTPAS-------ASLEGLAQTAGRRP 53
+G+ +RPP P P D +K++P+T P S L Q P
Sbjct: 1157 VGRPVIRPPEQNAPPPGAPD---KDKQKQEPKTPVAPKKDLKIKNMGSWASLVQKHPTTP 1213
Query: 54 SEGNEPSTKELKEHPEAPVQRRQKKTRLPLELETSSTQKKSSSSSLLRNENGIDA-EPAE 112
S + S+ ++ A ++ +++ L + E + +K+ +R+ DA E A
Sbjct: 1214 SSTAKSSSDSFEQFRRAAREKEEREKALKAQAEHAEKEKERLRQERMRSREDEDALEQAR 1273
Query: 113 EAVIQKPRRKTKKTQPAELQ 132
A + RR+ ++ Q + Q
Sbjct: 1274 RAHEEARRRQEQQQQQRQEQ 1293
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 35.8 bits (81), Expect = 0.070
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 5 PVRPPRALPPVPSQDDIPL-----------SRPKKKKPRTKNTPASASLEGLAQTAGRRP 53
P PP PP P +DDI L PKK+K P + G
Sbjct: 81 PPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSER 140
Query: 54 SEGNEPSTKELKEHPEAPVQRRQKKTRLPLELETSSTQK 92
E E S E+ P ++R++K R E +T +K
Sbjct: 141 DEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKK 179
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 35.8 bits (81), Expect = 0.070
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 17 SQDDIP-LSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEHPEAPVQRR 75
S++ +P L R +K+ +TK+ + SL+ L QT+G +P +E+++ + + R
Sbjct: 611 SEEPLPSLRRGRKRHCKTKHLEQNGSLKKLRQTSGEVGLAPTDPVLREMEQKLQQEEEDR 670
Query: 76 QKKTRLPL----ELETSSTQKKSSSSSLLRNEN 104
Q +L E T S +K S LLR+ N
Sbjct: 671 QLALQLQRMFDNERRTVSRRKGSVDQYLLRSSN 703
>gi|156231049 zinc finger, AN1-type domain 5 [Homo sapiens]
Length = 213
Score = 35.8 bits (81), Expect = 0.070
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 65 KEHPEAPVQRRQKKTRL-PLELETSSTQKKSSSSSLLRNENGID-AEPAEEAVIQKPRRK 122
KEH +QR+Q R+ P+ + S S S+S+ R + ++ E A + +K R
Sbjct: 35 KEH----LQRQQNSGRMSPMGTASGSNSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNV 90
Query: 123 TKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKS 176
P Q E+ + ED IT +T V + V +SQP EK+
Sbjct: 91 PVAALPVT-QQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQSEEKA 143
>gi|156231047 zinc finger, AN1-type domain 5 [Homo sapiens]
Length = 213
Score = 35.8 bits (81), Expect = 0.070
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 65 KEHPEAPVQRRQKKTRL-PLELETSSTQKKSSSSSLLRNENGID-AEPAEEAVIQKPRRK 122
KEH +QR+Q R+ P+ + S S S+S+ R + ++ E A + +K R
Sbjct: 35 KEH----LQRQQNSGRMSPMGTASGSNSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNV 90
Query: 123 TKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKS 176
P Q E+ + ED IT +T V + V +SQP EK+
Sbjct: 91 PVAALPVT-QQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQSEEKA 143
>gi|5174755 zinc finger, AN1-type domain 5 [Homo sapiens]
Length = 213
Score = 35.8 bits (81), Expect = 0.070
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 65 KEHPEAPVQRRQKKTRL-PLELETSSTQKKSSSSSLLRNENGID-AEPAEEAVIQKPRRK 122
KEH +QR+Q R+ P+ + S S S+S+ R + ++ E A + +K R
Sbjct: 35 KEH----LQRQQNSGRMSPMGTASGSNSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNV 90
Query: 123 TKKTQPAELQYANELGVEDEDIITDEQTTVEQQSVFTAPTGISQPVGKVFVEKS 176
P Q E+ + ED IT +T V + V +SQP EK+
Sbjct: 91 PVAALPVT-QQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQSEEKA 143
>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
Length = 4116
Score = 35.8 bits (81), Expect = 0.070
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 27 KKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRLPLELE 86
K +P T + P + +GL PS GN S++ +++ + + ++ TR+ L +
Sbjct: 128 KVYQPATISVPRDRTGQGL-------PSSGNRSSSEPMRKKTKFSSRNKEDSTRIKLAFK 180
Query: 87 TS--STQKKSSSSSL-------LRNENGIDAEPAEEAVIQKPRRKTKKTQPAELQYANEL 137
TS S KK +SL + E +D +E ++ +K ++ Y
Sbjct: 181 TSIFSPMKKEVKTSLTFPGSRPMSPEQQLDVMLQQEMEMESKEKKPSESDLERYYYYLTN 240
Query: 138 GVEDEDIITDEQTTVEQQSVFTAPTGISQP 167
G+ + I +E + + S + T ++ P
Sbjct: 241 GIRKDMIAPEEGEVMVRISKLISNTLLTSP 270
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 35.8 bits (81), Expect = 0.070
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 17 SQDDIPLSRPKKKKPRTKNTPASASLEGLAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQ 76
++DD S KK K KN+ G ++ R S+ + K+L P PV +
Sbjct: 770 NEDDNRASESKKPKTEDKNSA------GHKPSSNRESSKQSAAKEKDLLPSPAGPVPSKD 823
Query: 77 KKTRLPLELETSSTQKKSSSSSLLRNENGIDAEPAEEAVIQKPRRKTKKTQ 127
KT E S ++ S SS L++ + + E + + K KKT+
Sbjct: 824 PKT------EHGSRKRTISQSSSLKSSSNSNKETSGSSKNSSSTSKQKKTE 868
>gi|225007652 processing of precursor 1 [Homo sapiens]
Length = 1024
Score = 35.0 bits (79), Expect = 0.12
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 24 SRPKKKKPRTKNTPASASLE-GLAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRL- 81
++ +K + +N P + +L G G + G E + K+ P P RQ++TR+
Sbjct: 4 AKERKHAKKMRNQPTNVTLSSGFVADRGVKHHSGGEKPFQAQKQEPH-PGTSRQRQTRVN 62
Query: 82 PLELETSSTQKKSSSSSLLRNENGIDAEP 110
P L ++SSS + R + G A P
Sbjct: 63 PHSLPDPEVNEQSSSKGMFRKKGGWKAGP 91
>gi|225007650 processing of precursor 1 [Homo sapiens]
Length = 1024
Score = 35.0 bits (79), Expect = 0.12
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 24 SRPKKKKPRTKNTPASASLE-GLAQTAGRRPSEGNEPSTKELKEHPEAPVQRRQKKTRL- 81
++ +K + +N P + +L G G + G E + K+ P P RQ++TR+
Sbjct: 4 AKERKHAKKMRNQPTNVTLSSGFVADRGVKHHSGGEKPFQAQKQEPH-PGTSRQRQTRVN 62
Query: 82 PLELETSSTQKKSSSSSLLRNENGIDAEP 110
P L ++SSS + R + G A P
Sbjct: 63 PHSLPDPEVNEQSSSKGMFRKKGGWKAGP 91
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,059,787
Number of Sequences: 37866
Number of extensions: 679552
Number of successful extensions: 3767
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 266
Number of HSP's that attempted gapping in prelim test: 3387
Number of HSP's gapped (non-prelim): 623
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.