Search of human proteins with 10764847

Search of human proteins with 10764847

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10764847 NADH dehydrogenase (ubiquinone) 1 beta subcomplex,
7, 18kDa [Homo sapiens]
         (137 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10764847 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7...   289   6e-79
gi|221136806 zinc finger, CCHC domain containing 18 [Homo sapiens]     35   0.015
gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo sa...    31   0.36 
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]           30   0.48 
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]           30   0.48 
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...    30   0.62 
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...    30   0.62 
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...    30   0.62 
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...    30   0.62 
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...    30   0.62 
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...    30   0.62 
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...    30   0.62 
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap...    30   0.62 
gi|150417986 ADP-ribosylation factor guanine nucleotide-exchange...    30   0.81 
gi|203096856 kinesin family member 7 [Homo sapiens]                    30   0.81 
gi|194294521 intersectin 2 isoform 1 [Homo sapiens]                    30   0.81 
gi|194294525 intersectin 2 isoform 2 [Homo sapiens]                    30   0.81 
gi|226493512 coiled-coil domain containing 81 isoform 1 [Homo sa...    29   1.1  
gi|226528772 coiled-coil domain containing 81 isoform 2 [Homo sa...    29   1.1  
gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens]          29   1.1  
gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens]           29   1.1  
gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens]           29   1.1  
gi|33598958 ADP-ribosylation factor-like 2-like 1 isoform 2 [Hom...    29   1.1  
gi|33598956 ADP-ribosylation factor-like 2-like 1 isoform 1 [Hom...    29   1.1  
gi|19924149 toll-like receptor 4 precursor [Homo sapiens]              29   1.4  
gi|222136585 timeless homolog [Homo sapiens]                           29   1.4  
gi|55770832 cerebellar degeneration-related protein 2 [Homo sapi...    29   1.4  
gi|225579095 S-phase cyclin A-associated protein in the ER isofo...    28   1.8  
gi|236459851 ubinuclein 2 [Homo sapiens]                               28   1.8  
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]     28   1.8  

>gi|10764847 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7,
           18kDa [Homo sapiens]
          Length = 137

 Score =  289 bits (739), Expect = 6e-79
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MGAHLVRRYLGDASVEPDPLQMPTFPPDYGFPERKEREMVATQQEMMDAQLRLQLRDYCA 60
           MGAHLVRRYLGDASVEPDPLQMPTFPPDYGFPERKEREMVATQQEMMDAQLRLQLRDYCA
Sbjct: 1   MGAHLVRRYLGDASVEPDPLQMPTFPPDYGFPERKEREMVATQQEMMDAQLRLQLRDYCA 60

Query: 61  HHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKKAA 120
           HHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKKAA
Sbjct: 61  HHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKKAA 120

Query: 121 ELAKGQGPGEVDPKVAL 137
           ELAKGQGPGEVDPKVAL
Sbjct: 121 ELAKGQGPGEVDPKVAL 137


>gi|221136806 zinc finger, CCHC domain containing 18 [Homo sapiens]
          Length = 403

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 30  GFPERKEREMVATQQEMMDAQLRLQLRDYCAHHLIRLLKCKRDSFPNFL---ACKQERHD 86
           G    K+      QQ ++ A+L   LR +   HL+R+   K++  PNFL      +E  D
Sbjct: 163 GILAEKDANQTRLQQLLLGAELNRDLR-FRLKHLLRMYANKQERLPNFLELIKMIREEED 221

Query: 87  WDYCEHRDYVMRMKEFERERRLLQR 111
           WD     D  ++ K  +R   +++R
Sbjct: 222 WD-----DAFIKRKRPKRSEPIMER 241


>gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo
            sapiens]
          Length = 1826

 Score = 30.8 bits (68), Expect = 0.36
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 13/71 (18%)

Query: 64   IRLLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKKAAELA 123
            +R+   K + F    A   E+H              +E  +ERR +Q + RR K+  E  
Sbjct: 1214 VRIRTTKDEKFIQKFALFDEKH-------------REEMRKERRRIQEQLRRLKRNQEKE 1260

Query: 124  KGQGPGEVDPK 134
            K +GP E  PK
Sbjct: 1261 KLKGPPEKKPK 1271



 Score = 26.6 bits (57), Expect = 6.9
 Identities = 16/49 (32%), Positives = 20/49 (40%)

Query: 29  YGFPERKEREMVATQQEMMDAQLRLQLRDYCAHHLIRLLKCKRDSFPNF 77
           Y   E +     ATQ E  D +L L L     H   +LL    + FP F
Sbjct: 205 YSDSESEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEF 253


>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
          Length = 1872

 Score = 30.4 bits (67), Expect = 0.48
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 100  KEFERERRLLQRKKRREKKAAELAKGQGPGEVDPK 134
            +E  +ERR +Q + RR K+  E  K +GP E  PK
Sbjct: 1218 EEMRKERRRIQEQLRRLKRNQEKEKLKGPPEKKPK 1252



 Score = 27.3 bits (59), Expect = 4.0
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 28  DYGFPERKEREM---VATQQEMMDAQLRLQLRDYCAHHLIRLLKCKRDSFPNFLACKQER 84
           D+      E EM    ATQ E  D +L L L     H   +LL    + FP F   K  R
Sbjct: 181 DFSSSSDSESEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLR 240

Query: 85  HDWDYCEHRDYVMRMKEFERERRLLQRKKRREKKAAEL 122
               +   ++     +   R+R+   R+  +E++  E+
Sbjct: 241 FLRLFGPGKNVPSVWRSARRKRKKKHRELIQEEQIQEV 278


>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
          Length = 1893

 Score = 30.4 bits (67), Expect = 0.48
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 100  KEFERERRLLQRKKRREKKAAELAKGQGPGEVDPK 134
            +E  +ERR +Q + RR K+  E  K +GP E  PK
Sbjct: 1239 EEMRKERRRIQEQLRRLKRNQEKEKLKGPPEKKPK 1273



 Score = 27.7 bits (60), Expect = 3.1
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 19  PLQMPTFPPDYGFPERKEREM---VATQQEMMDAQLRLQLRDYCAHHLIRLLKCKRDSFP 75
           P  + +   D+      E EM    ATQ E  D +L L L     H   +LL    + FP
Sbjct: 193 PSSLASEKVDFSSSSDSESEMGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFP 252

Query: 76  NFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKKAAEL 122
            F   K  R    +   ++     +   R+R+   R+  +E++  E+
Sbjct: 253 EFRPGKVLRFLRLFGPGKNVPSVWRSARRKRKKKHRELIQEEQIQEV 299


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score = 30.0 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 94  DYVMRMKEFERERRLLQ----RKKRREKKAAELAKGQGP 128
           +YV  + E  R+ +  Q    +KK+++KK AE A+GQ P
Sbjct: 559 EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTP 597


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 30.0 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 94  DYVMRMKEFERERRLLQ----RKKRREKKAAELAKGQGP 128
           +YV  + E  R+ +  Q    +KK+++KK AE A+GQ P
Sbjct: 559 EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTP 597


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score = 30.0 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 94  DYVMRMKEFERERRLLQ----RKKRREKKAAELAKGQGP 128
           +YV  + E  R+ +  Q    +KK+++KK AE A+GQ P
Sbjct: 559 EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTP 597


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score = 30.0 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 94  DYVMRMKEFERERRLLQ----RKKRREKKAAELAKGQGP 128
           +YV  + E  R+ +  Q    +KK+++KK AE A+GQ P
Sbjct: 559 EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTP 597


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score = 30.0 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 94  DYVMRMKEFERERRLLQ----RKKRREKKAAELAKGQGP 128
           +YV  + E  R+ +  Q    +KK+++KK AE A+GQ P
Sbjct: 559 EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTP 597


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 30.0 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 94  DYVMRMKEFERERRLLQ----RKKRREKKAAELAKGQGP 128
           +YV  + E  R+ +  Q    +KK+++KK AE A+GQ P
Sbjct: 559 EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTP 597


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 30.0 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 94  DYVMRMKEFERERRLLQ----RKKRREKKAAELAKGQGP 128
           +YV  + E  R+ +  Q    +KK+++KK AE A+GQ P
Sbjct: 559 EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTP 597


>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
           sapiens]
          Length = 558

 Score = 30.0 bits (66), Expect = 0.62
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 48  DAQLRLQLRDYCAHHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERR 107
           D   + Q RD   H+  R  + +RDS  +  A  ++ H W   E  D      + ER  R
Sbjct: 318 DQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSH-WKRHEQEDKPRARDQRERSDR 376

Query: 108 LLQRKKRREK 117
           + +R+K REK
Sbjct: 377 VWKREKDREK 386


>gi|150417986 ADP-ribosylation factor guanine nucleotide-exchange
            factor 2 [Homo sapiens]
          Length = 1785

 Score = 29.6 bits (65), Expect = 0.81
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 10/53 (18%)

Query: 31   FPERKERE----MVATQQEMMDAQLRLQLRD------YCAHHLIRLLKCKRDS 73
            +P   ++E    MVA QQ+ +DA + ++  D        + HL +LL C ++S
Sbjct: 1569 YPATSKKEDAEHMVAAQQDTLDADIHIETEDQGMYKYMSSQHLFKLLDCLQES 1621


>gi|203096856 kinesin family member 7 [Homo sapiens]
          Length = 1343

 Score = 29.6 bits (65), Expect = 0.81
 Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 33  ERKEREMVATQQEMMDAQLRLQLRDY-----CAHHLIRLLKCKRDSFPNFLACK-QERHD 86
           +R+ RE+    +E+ DA  R +L+++      A   +++LK K+ +    ++   Q    
Sbjct: 763 QRQLRELEG--KELQDAGERSRLQEFRRRVAAAQSQVQVLKEKKQATERLVSLSAQSEKR 820

Query: 87  WDYCEHRDYVMRMKEFERERRLLQRKKRREKKAAELAKGQ 126
               E    +MR ++ + +RRL +  +++ +  AE++K Q
Sbjct: 821 LQELERNVQLMRQQQGQLQRRLREETEQKRRLEAEMSKRQ 860


>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
          Length = 1697

 Score = 29.6 bits (65), Expect = 0.81
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 59  CAHHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKK 118
           C ++L  LLK  R+++      +Q   +  Y   RD   ++KE ER+R  L +KK+ E +
Sbjct: 639 CLNNLFLLLKELRETYNT----QQLALEQLYKIKRD---KLKEIERKRLELMQKKKLEDE 691

Query: 119 AAELAK 124
           AA  AK
Sbjct: 692 AARKAK 697


>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
          Length = 1249

 Score = 29.6 bits (65), Expect = 0.81
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 59  CAHHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKK 118
           C ++L  LLK  R+++      +Q   +  Y   RD   ++KE ER+R  L +KK+ E +
Sbjct: 639 CLNNLFLLLKELRETYNT----QQLALEQLYKIKRD---KLKEIERKRLELMQKKKLEDE 691

Query: 119 AAELAK 124
           AA  AK
Sbjct: 692 AARKAK 697


>gi|226493512 coiled-coil domain containing 81 isoform 1 [Homo
           sapiens]
          Length = 652

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 12  DASVEPDPLQMPTFPPDYGFP--ERKEREMVATQQEMMDAQLRLQLRDYCAHH----LIR 65
           DA ++  P ++P F PD   P   + E E++  +Q+     ++ QL     H     L +
Sbjct: 488 DAQIKNKPSRLPPFEPDSSEPIFGKNEGELMVEKQKREQNYMKHQLEAAANHKRKAILHQ 547

Query: 66  LLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERE--RRLLQRKKRR--EKKAAE 121
           L+  +RD     L   Q  H  D     + V R+ +  +E   R    KK+R  E KA E
Sbjct: 548 LVDQRRDL--QMLQRTQREHLADRTAELERVNRVNQCLQEDWERSAAMKKQRDLEDKAFE 605

Query: 122 LA 123
            A
Sbjct: 606 RA 607


>gi|226528772 coiled-coil domain containing 81 isoform 2 [Homo
           sapiens]
          Length = 562

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 12  DASVEPDPLQMPTFPPDYGFP--ERKEREMVATQQEMMDAQLRLQLRDYCAHH----LIR 65
           DA ++  P ++P F PD   P   + E E++  +Q+     ++ QL     H     L +
Sbjct: 398 DAQIKNKPSRLPPFEPDSSEPIFGKNEGELMVEKQKREQNYMKHQLEAAANHKRKAILHQ 457

Query: 66  LLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERE--RRLLQRKKRR--EKKAAE 121
           L+  +RD     L   Q  H  D     + V R+ +  +E   R    KK+R  E KA E
Sbjct: 458 LVDQRRDL--QMLQRTQREHLADRTAELERVNRVNQCLQEDWERSAAMKKQRDLEDKAFE 515

Query: 122 LA 123
            A
Sbjct: 516 RA 517


>gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 91  EHRDYVMRMKEFERERRLLQRKKRREK---KAAELAKG 125
           +H  Y + M + +R+R   +R+KR+EK   KA ++AKG
Sbjct: 89  QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAKG 126


>gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 91  EHRDYVMRMKEFERERRLLQRKKRREK---KAAELAKG 125
           +H  Y + M + +R+R   +R+KR+EK   KA ++AKG
Sbjct: 89  QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAKG 126


>gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens]
          Length = 129

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 91  EHRDYVMRMKEFERERRLLQRKKRREK---KAAELAKG 125
           +H  Y + M + +R+R   +R+KR+EK   KA ++AKG
Sbjct: 89  QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAKG 126


>gi|33598958 ADP-ribosylation factor-like 2-like 1 isoform 2 [Homo
           sapiens]
          Length = 321

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 98  RMKEFERERRLLQRKKRREKKAAELAKGQGPGEVDPK 134
           + +  ER R+L + +K+ E++ AEL    G  E+DP+
Sbjct: 109 KQERAERVRKLREERKQNEQEQAELDGTSGLAELDPE 145


>gi|33598956 ADP-ribosylation factor-like 2-like 1 isoform 1 [Homo
           sapiens]
          Length = 428

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 98  RMKEFERERRLLQRKKRREKKAAELAKGQGPGEVDPK 134
           + +  ER R+L + +K+ E++ AEL    G  E+DP+
Sbjct: 216 KQERAERVRKLREERKQNEQEQAELDGTSGLAELDPE 252


>gi|19924149 toll-like receptor 4 precursor [Homo sapiens]
          Length = 839

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 53  LQLRDYCAHHLIRLLKCKRDSFPNFLA-CKQERHDWD-YCEHRDYVMRMKEFERERRLLQ 110
           LQ+ DY  +H++   K +   FP+ LA     ++D+   CEH+ ++  +K+   +R+LL 
Sbjct: 546 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD---QRQLLV 602

Query: 111 RKKRRE 116
             +R E
Sbjct: 603 EVERME 608


>gi|222136585 timeless homolog [Homo sapiens]
          Length = 1208

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 2   GAHLVRRYLGDASVEPDPLQMPTFPPDYGFPERKEREMVATQQEMMDAQLRLQLRDYCAH 61
           G H +R Y  D   +P  +           P+R++     + Q      +RL LRD+C+ 
Sbjct: 300 GLHNLRNYSSDLGKQPKKV-----------PKRRQAARELSIQRRSALNVRLFLRDFCSE 348

Query: 62  HL----IRLLKCKRDSFPNFLACKQERHDWDY 89
            L     RL+   +D   + L  K ++HD  Y
Sbjct: 349 FLENCYNRLMGSVKD---HLLREKAQQHDETY 377


>gi|55770832 cerebellar degeneration-related protein 2 [Homo
           sapiens]
          Length = 454

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 13  ASVEPDPLQMPTFPPDYGFPERKEREMVATQQEMMDAQLRLQLRDYCAH 61
           ASV P+P+  PT PP+Y    ++    +   ++ +D Q R + R   +H
Sbjct: 406 ASVNPEPVSSPTTPPEYKALFKEIFSCIKKTKQEIDEQ-RTKYRSLSSH 453


>gi|225579095 S-phase cyclin A-associated protein in the ER isoform
           b [Homo sapiens]
          Length = 1154

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 68  KCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKKAAELAK 124
           K    +F N L  + +RHD    + ++Y  R+ E + ER+  Q +K+   +A +  K
Sbjct: 376 KVNEIAFINTLEAQNKRHDV-LSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERK 431


>gi|236459851 ubinuclein 2 [Homo sapiens]
          Length = 1347

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 17  PDPLQMPTFPPDYGFP----ERKEREMVATQQEMMDAQLRLQLRDYCAHHLIRLLKCKRD 72
           P P   P FPP    P    E   R     +      +L L L+D           C   
Sbjct: 91  PRPEPPPPFPPLPLQPPPPRESASRAEQPPRPPRETVRLELVLKDPTDE------SCVEF 144

Query: 73  SFPNFLACKQER----HDWD-----YCEHRDYVMRMKEFERERRLLQRKKRREKKAAELA 123
           S+P  L C ++R    H  D     + E ++  M  K+FE +     RK R+++    + 
Sbjct: 145 SYPELLLCGEQRKKLIHTEDPFNDEHQERQEVEMLAKKFEMKYGGKPRKHRKDRLQDLID 204

Query: 124 KGQGPGEVDP 133
            G G  E DP
Sbjct: 205 IGFGYDETDP 214


>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
          Length = 770

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 84  RHDWDYCEHRDYVMRMKEFERER-RLLQRKKRREKKAAELAKGQ 126
           R +W+  + R+        ER+R   L+RK+ RE+K  E  K Q
Sbjct: 133 RREWERQKRREMAREHSRRERDRLEQLERKRERERKMREQQKEQ 176


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,903,113
Number of Sequences: 37866
Number of extensions: 249090
Number of successful extensions: 1471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 169
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.