Guide to the Human Genome
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Name: SCUBE2 Sequence: fasta or formatted (999aa) NCBI GI: 10190748
Description:

CEGP1 protein

Referenced in:

Extracellular Matrix

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         45           2
 C cysteine            8.6         86           3
 D aspartate           5.5         55           2
 E glutamate           6.7         67           2
 F phenylalanine       3.6         36           2
 G glycine             9.5         95           3
 H histidine           3.2         32           1
 I isoleucine          3.0         30           1
 K lysine              5.2         52           2
 L leucine             7.1         71           7
 M methionine          1.2         12           1
 N asparagine          5.2         52           2
 P proline             5.3         53           3
 Q glutamine           4.0         40           2
 R arginine            5.7         57           2
 S serine              6.4         64           3
 T threonine           6.9         69           3
 V valine              5.0         50           2
 W tryptophan          0.5          5           1
 Y tyrosine            2.8         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CEGP1 protein 
SCUBE1                0.641   signal peptide, CUB domain, EGF-like 1 
SCUBE3                0.594   signal peptide, CUB domain, EGF-like 3 
MATN2                 0.108   matrilin 2 isoform b precursor 
MATN2                 0.108   matrilin 2 isoform a precursor 
MEGF6                 0.101   EGF-like-domain, multiple 3 
FBN2                  0.095   fibrillin 2 precursor 
FBN1                  0.089   fibrillin 1 precursor 
FBN3                  0.087   fibrillin 3 precursor 
LTBP1                 0.079   latent transforming growth factor beta binding prote...
LTBP1                 0.079   latent transforming growth factor beta binding prote...
LTBP2                 0.076   latent transforming growth factor beta binding protei...
FBLN2                 0.071   fibulin 2 isoform b precursor 
FBLN2                 0.071   fibulin 2 isoform a precursor 
LTBP4                 0.070   latent transforming growth factor beta binding prot...
LTBP4                 0.070   latent transforming growth factor beta binding prot...
LTBP4                 0.070   latent transforming growth factor beta binding prot...
HMCN1                 0.067   hemicentin 1 
FBLN1                 0.065   fibulin 1 isoform B precursor 
FBLN1                 0.065   fibulin 1 isoform A precursor 
FBLN1                 0.065   fibulin 1 isoform D 
FBLN1                 0.065   fibulin 1 isoform C precursor 
LTBP3                 0.062   latent transforming growth factor beta binding prot...
LTBP3                 0.060   latent transforming growth factor beta binding prote...
HMCN2                 0.058   PREDICTED: hemicentin 2 
HMCN2                 0.058   PREDICTED: hemicentin 2 
HMCN2                 0.058   PREDICTED: hemicentin 2 
FBLN5                 0.055   fibulin 5 precursor 
NOTCH1                0.053   notch1 preproprotein 
NOTCH3                0.053   Notch homolog 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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