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Search of human proteins with 100913209
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|100913209 heat shock transcription factor 4 isoform b [Homo
sapiens]
(492 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|100913209 heat shock transcription factor 4 isoform b [Homo s... 1000 0.0
gi|100913211 heat shock transcription factor 4 isoform a [Homo s... 826 0.0
gi|5031767 heat shock transcription factor 1 [Homo sapiens] 284 1e-76
gi|207113147 heat shock transcription factor 2 isoform b [Homo s... 193 3e-49
gi|4758568 heat shock transcription factor 2 isoform a [Homo sap... 193 3e-49
gi|122937277 heat shock transcription factor family member 5 [Ho... 60 3e-09
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 55 2e-07
gi|239752444 PREDICTED: similar to heat shock transcription fact... 51 3e-06
gi|239746964 PREDICTED: similar to heat shock transcription fact... 51 3e-06
gi|50312655 heat shock transcription factor, Y-linked 1 isoform ... 50 4e-06
gi|32526913 heat shock transcription factor, Y linked 2 isoform ... 50 4e-06
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 48 2e-05
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 47 5e-05
gi|169216697 PREDICTED: heat shock transcription factor family, ... 46 9e-05
gi|7706603 heat shock transcription factor family, X linked 1 [H... 46 9e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 45 2e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 44 3e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 44 3e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 44 3e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 42 0.001
gi|41281612 zinc finger protein 828 [Homo sapiens] 42 0.001
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 42 0.001
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 42 0.002
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 42 0.002
gi|24211017 heat shock transcription factor, Y-linked 1 isoform ... 42 0.002
gi|50312659 heat shock transcription factor, Y linked 2 isoform ... 42 0.002
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 41 0.002
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 41 0.002
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 41 0.002
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 41 0.002
>gi|100913209 heat shock transcription factor 4 isoform b [Homo
sapiens]
Length = 492
Score = 1000 bits (2585), Expect = 0.0
Identities = 492/492 (100%), Positives = 492/492 (100%)
Query: 1 MQEAPAALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP 60
MQEAPAALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP
Sbjct: 1 MQEAPAALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP 60
Query: 61 QYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120
QYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK
Sbjct: 61 QYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120
Query: 121 VPALRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQ 180
VPALRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQ
Sbjct: 121 VPALRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQ 180
Query: 181 QHRVIGKLIQCLFGPLQAGPSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYF 240
QHRVIGKLIQCLFGPLQAGPSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYF
Sbjct: 181 QHRVIGKLIQCLFGPLQAGPSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYF 240
Query: 241 IQSPLPETNLGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPG 300
IQSPLPETNLGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPG
Sbjct: 241 IQSPLPETNLGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPG 300
Query: 301 GDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPD 360
GDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPD
Sbjct: 301 GDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPD 360
Query: 361 RGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQ 420
RGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQ
Sbjct: 361 RGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQ 420
Query: 421 PLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRT 480
PLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRT
Sbjct: 421 PLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRT 480
Query: 481 ASYLGPEASPSP 492
ASYLGPEASPSP
Sbjct: 481 ASYLGPEASPSP 492
>gi|100913211 heat shock transcription factor 4 isoform a [Homo
sapiens]
Length = 462
Score = 826 bits (2133), Expect = 0.0
Identities = 426/492 (86%), Positives = 431/492 (87%), Gaps = 30/492 (6%)
Query: 1 MQEAPAALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP 60
MQEAPAALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP
Sbjct: 1 MQEAPAALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP 60
Query: 61 QYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120
QYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK
Sbjct: 61 QYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120
Query: 121 VPALRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQ 180
VPALRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQ
Sbjct: 121 VPALRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQ 180
Query: 181 QHRVIGKLIQCLFGPLQAGPSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYF 240
QHRVIGKLIQCLFGPLQAGPSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYF
Sbjct: 181 QHRVIGKLIQCLFGPLQAGPSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYF 240
Query: 241 IQSPLPETNLGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPG 300
IQSP + LS + ++ S L P +G L P G
Sbjct: 241 IQSP---STYSLSQRQIWALALTGPGAPSSLTSQKTLHPL------RGPGFL--PPVMAG 289
Query: 301 GDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPD 360
APPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPD
Sbjct: 290 -------------------APPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPD 330
Query: 361 RGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQ 420
RGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQ
Sbjct: 331 RGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQ 390
Query: 421 PLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRT 480
PLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRT
Sbjct: 391 PLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRT 450
Query: 481 ASYLGPEASPSP 492
ASYLGPEASPSP
Sbjct: 451 ASYLGPEASPSP 462
>gi|5031767 heat shock transcription factor 1 [Homo sapiens]
Length = 529
Score = 284 bits (727), Expect = 1e-76
Identities = 193/465 (41%), Positives = 255/465 (54%), Gaps = 38/465 (8%)
Query: 9 PTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNM 68
P GPS VPAFL KLW LV DP TD LI WSPSG SF V DQ +FAKEVLP+YFKH+NM
Sbjct: 7 PGAAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNM 66
Query: 69 ASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPA---LR 125
ASFVRQLNMYGFRKVV IEQGGL++PERD EFQHP F+RG+EQLLE ++RKV + L+
Sbjct: 67 ASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLK 126
Query: 126 GDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQQHRVI 185
+D + R + + +LL +VQ ++G QE +++L ++ +NE LWREV +LRQ H QQ +V+
Sbjct: 127 SEDIKIRQDSVTKLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVV 186
Query: 186 GKLIQCLFGPLQAGPSNAGGKRKLSLML-DEGSSCPTPAKFNTCPLPGALLQDPYFIQSP 244
KLIQ L +Q+ G KRK+ LML D GS+ P L PY SP
Sbjct: 187 NKLIQFLISLVQSN-RILGVKRKIPLMLNDSGSAHSMPKYSRQFSLEHVHGSGPYSAPSP 245
Query: 245 LPETNLGLSPH--RARGPIISDIPEDSPSPEGTRLSPSSDGR--REKGLALLKEEP---- 296
++ +P + GPIISDI E +P+ S D R L +KEEP
Sbjct: 246 AYSSSSLYAPDAVASSGPIISDITELAPASPMASPGGSIDERPLSSSPLVRVKEEPPSPP 305
Query: 297 -------ASPGGDGEAGLALAPNE-CDFCVTAPPPLPVAVVQAILEGKGSFSPEG----P 344
ASPG L+P D + P P A V A+ + +G EG P
Sbjct: 306 QSPRVEEASPGRPSSVDTLLSPTALIDSILRESEPAP-ASVTALTDARGHTDTEGRPPSP 364
Query: 345 RNAQQPEPG------DPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVL 398
PE D E+ D L++ D + ++L +L SV+ + LD+
Sbjct: 365 PPTSTPEKCLSVACLDKNELSDH----LDAMDSNLDNL--QTMLSSHGFSVDTSALLDLF 418
Query: 399 GPSLQGREWTLMDLDMELSLMQPLVPERGEPELAVKGLNSPSPGK 443
PS+ + +L DLD L+ +Q L+ + P +SP GK
Sbjct: 419 SPSVTVPDMSLPDLDSSLASIQELLSPQEPPRPPEAENSSPDSGK 463
>gi|207113147 heat shock transcription factor 2 isoform b [Homo
sapiens]
Length = 518
Score = 193 bits (490), Expect = 3e-49
Identities = 102/201 (50%), Positives = 140/201 (69%), Gaps = 3/201 (1%)
Query: 15 SPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQ 74
S VPAFL KLW LV + T+ I WS +G SFLV D+ RFAKE+LP+YFKH+NMASFVRQ
Sbjct: 5 SNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQ 64
Query: 75 LNMYGFRKVVSIEQGGLLRPERD-HVEFQHPSFVRGREQLLERVRRKVPALRGDDGRWRP 133
LNMYGFRKVV I+ G+++ ERD VEFQHP F +G++ LLE ++RKV + + ++ + R
Sbjct: 65 LNMYGFRKVVHID-SGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQ 123
Query: 134 EDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQQHRVIGKLIQCLF 193
EDL +++ Q ++ QE+ E+RL EL+ +NE LW+EV LR H QQ +VI K++Q +
Sbjct: 124 EDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIV 183
Query: 194 GPLQAGPSNAGGKRKLSLMLD 214
+Q KRK L+L+
Sbjct: 184 TLVQ-NNQLVSLKRKRPLLLN 203
>gi|4758568 heat shock transcription factor 2 isoform a [Homo
sapiens]
Length = 536
Score = 193 bits (490), Expect = 3e-49
Identities = 102/201 (50%), Positives = 140/201 (69%), Gaps = 3/201 (1%)
Query: 15 SPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQ 74
S VPAFL KLW LV + T+ I WS +G SFLV D+ RFAKE+LP+YFKH+NMASFVRQ
Sbjct: 5 SNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQ 64
Query: 75 LNMYGFRKVVSIEQGGLLRPERD-HVEFQHPSFVRGREQLLERVRRKVPALRGDDGRWRP 133
LNMYGFRKVV I+ G+++ ERD VEFQHP F +G++ LLE ++RKV + + ++ + R
Sbjct: 65 LNMYGFRKVVHID-SGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQ 123
Query: 134 EDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQQHRVIGKLIQCLF 193
EDL +++ Q ++ QE+ E+RL EL+ +NE LW+EV LR H QQ +VI K++Q +
Sbjct: 124 EDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIV 183
Query: 194 GPLQAGPSNAGGKRKLSLMLD 214
+Q KRK L+L+
Sbjct: 184 TLVQ-NNQLVSLKRKRPLLLN 203
>gi|122937277 heat shock transcription factor family member 5 [Homo
sapiens]
Length = 596
Score = 60.5 bits (145), Expect = 3e-09
Identities = 49/136 (36%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 6 AALPTEPGPSPVPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVL------ 59
A L T P+ PA KLW LV P IRW G L+ DQ F E+L
Sbjct: 3 ALLSTPINPNNFPA---KLWRLVNSPRY-RSIRWDGRGEGLLI-DQPLFEAELLSPPGPG 57
Query: 60 -----------PQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHV-EFQHPSFV 107
P+ FK ++ SF+RQLN+YGFRKVV GG + F +P F
Sbjct: 58 GGGGTAGAGAEPELFKTTSFTSFIRQLNLYGFRKVVLGGPGGGKPAGNGPLHHFHNPHFR 117
Query: 108 RGREQLLERVRRKVPA 123
R + QLL ++R A
Sbjct: 118 RDQPQLLVHLKRLTSA 133
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 54.7 bits (130), Expect = 2e-07
Identities = 88/317 (27%), Positives = 125/317 (39%), Gaps = 56/317 (17%)
Query: 209 LSLMLDEGSSCPTPAKFNTCPLPGALLQDPYFIQ-------SPLPETNLGLSPHRARGPI 261
LS +E P P + C +P ++P+ SP PE L LSP + P
Sbjct: 761 LSPQAEEPHLSPQPEEPCLCAVP----EEPHLSPQAEGPHLSPQPE-ELHLSP-QTEEPH 814
Query: 262 ISDIPED---SPSPEGTRLSPSSDGR------REKGLAL-LKEEPASPGGDG---EAGLA 308
+S +PE+ SP PE + LSP S+ E L+ L++ P SP + E G
Sbjct: 815 LSPVPEEPCLSPQPEESHLSPQSEEPCLSPRPEESHLSPELEKPPLSPRPEKPPEEPGQC 874
Query: 309 LAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDP--REIPDRGPLGL 366
AP E PPP G+ S SP A EPG+P +P+ PL
Sbjct: 875 PAPEELPLF---PPP-----------GEPSLSPLLGEPALS-EPGEPPLSPLPEELPLSP 919
Query: 367 ESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGP--SLQGREWTLMDLDMELSLMQPLV- 423
L+PP L PP + A L P L+ D D E L P++
Sbjct: 920 SGEPSLSPQLMPPDPLPPPLSPIITAAAPPALSPLGELEYPFGAKGDSDPESPLAAPILE 979
Query: 424 ------PERG--EPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYST 475
PE +PE + PSPG +P+L++ P L +L ++
Sbjct: 980 TPISPPPEANCTDPEPVPPMILPPSPGSPVGPASPILMEPLPPQCSPL--LQHSLVPQNS 1037
Query: 476 PESRTASYLGPEASPSP 492
P S+ + P + PSP
Sbjct: 1038 PPSQCSPPALPLSVPSP 1054
Score = 43.9 bits (102), Expect = 3e-04
Identities = 76/287 (26%), Positives = 106/287 (36%), Gaps = 25/287 (8%)
Query: 220 PTPAKFNTCPLPGALLQDPYFIQSPLPETNLGLSPHRARGPIISDIPEDSPS---PEGTR 276
P P + PL A +Q +++PL E + L P P+ S PE+SP+ PE +R
Sbjct: 409 PGPLQCEAKPLGKAGVQLEPQLEAPLNE-EMPLLPPPEESPL-SPPPEESPTSPPPEASR 466
Query: 277 LSPSSDGRREKGL--AL-----LKEEPASPGGDGEAGLALAPNECDFCVTAPPPL----- 324
LSP + L AL L+E P SP + E+ L+ P F PL
Sbjct: 467 LSPPPEELPASPLPEALHLSRPLEESPLSPPPE-ESPLSPPPESSPFSPLEESPLSPPEE 525
Query: 325 --PVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLL 382
P ++ L SP P + P P E+P P E+ SP PM
Sbjct: 526 SPPSPALETPLSPPPEASPLSPPFEESPLSPPPEELPTSPP--PEASRLSPPPEESPMSP 583
Query: 383 QPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEPELAVKGLNSPSPG 442
P + + P L P + E L E L P R P + SP P
Sbjct: 584 PPEESPMSPPPEASRLFPPFE--ESPLSPPPEESPLSPPPEASRLSPPPEDSPM-SPPPE 640
Query: 443 KDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRTASYLGPEAS 489
+ P P + + L P + S P + + PEAS
Sbjct: 641 ESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEAS 687
Score = 42.4 bits (98), Expect = 0.001
Identities = 78/293 (26%), Positives = 104/293 (35%), Gaps = 63/293 (21%)
Query: 208 KLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYFIQSPL---PETNLGLSPHRARGPIISD 264
+LS ++ + P P P P L +SPL PE L P R+ GP +S
Sbjct: 688 RLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLLPLPEEPQ-LCP-RSEGPHLSP 745
Query: 265 IPED---SPSPEGTRLSPSSDGRREKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAP 321
PE+ SP PE LSP ++ E L+ EEP C+ A
Sbjct: 746 RPEEPHLSPRPEEPHLSPQAE---EPHLSPQPEEP--------------------CLCAV 782
Query: 322 PPLPVAVVQAILEGKGSFSPEGPRNAQQPEP---GDPREIPDRGPLGLESGDRSPESLLP 378
P P QA EGP + QPE E P P+ PE P
Sbjct: 783 PEEPHLSPQA----------EGPHLSPQPEELHLSPQTEEPHLSPV--------PEE--P 822
Query: 379 PMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEPELAVKGLNS 438
+ QP + + P L P + + + L +P + R E G
Sbjct: 823 CLSPQPEESHLSPQSEEPCLSPRPE-------ESHLSPELEKPPLSPRPEKPPEEPG-QC 874
Query: 439 PSPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRTASYLG-PEASP 490
P+P + P P + LG PAL PG + PE S G P SP
Sbjct: 875 PAPEELPLFPPPGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSP 927
Score = 29.6 bits (65), Expect = 6.5
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 289 LALLKEEPASPGGDGEAGLALAPNECDFC-VTAPPPLPVAVVQAILEGKGSFSPEGPRNA 347
L+LLK+E +P + + D ++APPP + + L + P P
Sbjct: 4876 LSLLKQESPAPEPPTQHSYTYNVSNLDVRQLSAPPPEEPSPPPSPLAPSPASPPTEPLVE 4935
Query: 348 QQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPAGP 394
EP +P PL L S SPES P +PP+E + P
Sbjct: 4936 LPTEPLAEPPVPS--PLPLAS---SPESARPKPRARPPEEGEDSRPP 4977
>gi|239752444 PREDICTED: similar to heat shock transcription factor
family, X linked 1 [Homo sapiens]
Length = 354
Score = 50.8 bits (120), Expect = 3e-06
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 19 AFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQ-----YFKHSNMASFVR 73
+F KLW +V + T + W+ G + ++ D+ F +EVL + FK ++ SF+R
Sbjct: 82 SFPRKLWTIV-EEDTFKSVSWNDDGDAVII-DKDLFQREVLQRKGAERIFKTDSLTSFIR 139
Query: 74 QLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120
QLN+YGF K G + + + + +F R + +LLE ++RK
Sbjct: 140 QLNLYGFCKTRPSNSPG----NKKMMIYCNSNFQRDKPRLLENIQRK 182
>gi|239746964 PREDICTED: similar to heat shock transcription factor
family, X linked 1 [Homo sapiens]
Length = 333
Score = 50.8 bits (120), Expect = 3e-06
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 19 AFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQ-----YFKHSNMASFVR 73
+F KLW +V + T + W+ G + ++ D+ F +EVL + FK ++ SF+R
Sbjct: 82 SFPRKLWTIV-EEDTFKSVSWNDDGDAVII-DKDLFQREVLQRKGAERIFKTDSLTSFIR 139
Query: 74 QLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRK 120
QLN+YGF K G + + + + +F R + +LLE ++RK
Sbjct: 140 QLNLYGFCKTRPSNSPG----NKKMMIYCNSNFQRDKPRLLENIQRK 182
>gi|50312655 heat shock transcription factor, Y-linked 1 isoform 1
[Homo sapiens]
Length = 401
Score = 50.4 bits (119), Expect = 4e-06
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 20 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP-----QYFKHSNMASFVRQ 74
F KLW +V + I W +GT +++++ F KE+L + F+ + SFVRQ
Sbjct: 80 FPRKLWKIV-ESDQFKSISWDENGTCIVINEEL-FKKEILETKAPYRIFQTDAIKSFVRQ 137
Query: 75 LNMYGFRKVVSIEQ-----GGLLRPERDHVE------FQHPSFVRGREQLLERVRRKV 121
LN+YGF K+ Q L E++ + +P+F RG QLL RV+R++
Sbjct: 138 LNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGYPQLLVRVKRRI 195
>gi|32526913 heat shock transcription factor, Y linked 2 isoform 1
[Homo sapiens]
Length = 401
Score = 50.4 bits (119), Expect = 4e-06
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 20 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP-----QYFKHSNMASFVRQ 74
F KLW +V + I W +GT +++++ F KE+L + F+ + SFVRQ
Sbjct: 80 FPRKLWKIV-ESDQFKSISWDENGTCIVINEEL-FKKEILETKAPYRIFQTDAIKSFVRQ 137
Query: 75 LNMYGFRKVVSIEQ-----GGLLRPERDHVE------FQHPSFVRGREQLLERVRRKV 121
LN+YGF K+ Q L E++ + +P+F RG QLL RV+R++
Sbjct: 138 LNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGYPQLLVRVKRRI 195
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 47.8 bits (112), Expect = 2e-05
Identities = 74/291 (25%), Positives = 96/291 (32%), Gaps = 50/291 (17%)
Query: 228 CPLPGALLQDPYFIQSPLPET--NLGLSPHRARGPIISDIPEDSPSPEGTRL-SPSSDGR 284
CP P L P + +P PET ++ P +A + S + PSP + L +P
Sbjct: 563 CPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAP 622
Query: 285 REKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGP 344
L L+ P+ P + LA T P P A+ +L+ S P P
Sbjct: 623 PXLALPPLQAPPSPPASPPLSPLA----------TPSPQAPNALAVHLLQAPFSPPPSPP 672
Query: 345 RNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVE----------PAGP 394
A P P P P ++P SL P L PP P P
Sbjct: 673 VQAPFSPPASPPVSPSATP-----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 727
Query: 395 LDVLGPSLQGREWTLMDLDMELSLMQP------------LVPERGEPELAVKGLNSPSPG 442
+ P LQ M S P VP L + L P P
Sbjct: 728 PPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQ 787
Query: 443 KDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRTASY-LGPEASPSP 492
P L P L AL P PG P S +AS + P A+P P
Sbjct: 788 APPALATPPL----QALPSPPASFPG-----QAPFSPSASLPMSPLATPPP 829
Score = 40.4 bits (93), Expect = 0.004
Identities = 67/306 (21%), Positives = 97/306 (31%), Gaps = 48/306 (15%)
Query: 200 PSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYFIQSPLPETNLGLSPHRARG 259
PS GG ++ + S+ P + + P + P P P+ L P +
Sbjct: 228 PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTP 287
Query: 260 PIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPGGDGEAGLALAPNECDFCVT 319
P P P +PS G K P P + L T
Sbjct: 288 PRKDAAPALGPLSSSPLATPSPSG--------TKARPVPPPDNAATPLP---------AT 330
Query: 320 APPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPP 379
PP P+A + S P + Q P P P + P P PP
Sbjct: 331 LPPSPPLATPLPLAPPSPSAPP-----SLQTLPSPPATPPSQAP---------PSMTTPP 376
Query: 380 MLLQPPQESVEPAG-PLDVLGPSLQG--REWTLMDLDMELSLMQP----------LVPER 426
M P +++ P P + PSLQ L L SL P + P +
Sbjct: 377 MQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQ 436
Query: 427 GEPELAVKGLNSPSPGKDPTLGAPLLL----DVQAALGGPALGLPGALTIYSTPESRTAS 482
+ L + +P P L APL L +Q +L L LTI+ + +
Sbjct: 437 TQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLA 496
Query: 483 YLGPEA 488
P+A
Sbjct: 497 SHSPQA 502
Score = 37.4 bits (85), Expect = 0.031
Identities = 63/266 (23%), Positives = 86/266 (32%), Gaps = 53/266 (19%)
Query: 233 ALLQDPYFIQSPLPETNLGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALL 292
+L+ P QS L +L P P + ++P +P P T +P + E
Sbjct: 506 SLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPA 565
Query: 293 K---EEPASPGGDGEAGLALAPNECDFCVTAPPP-LPVAVVQAILEGKGSFSPEGPRNAQ 348
+ P SP L P E + PPP P A+ L+G S
Sbjct: 566 PCPLQAPPSP-------LTTPPPETPSSIATPPPQAPPALASPPLQGLPS---------- 608
Query: 349 QPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWT 408
P PL P LPP+ P + P PL PS Q
Sbjct: 609 ----------PPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLAT--PSPQAPNAL 656
Query: 409 LMDLDMELSLMQPLVPERGEPELAVKGLNSP--SPGKDPTLGAPLLLDVQAALGGPALGL 466
+ L L P P P V+ SP SP P+ P +L P L +
Sbjct: 657 AVHL-----LQAPFSPPPSPP---VQAPFSPPASPPVSPSATPP--SQAPPSLAAPPLQV 706
Query: 467 PGALTIYSTPESRTASYLGPEASPSP 492
P P + + P A+P P
Sbjct: 707 P--------PSPPASPPMSPSATPPP 724
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 46.6 bits (109), Expect = 5e-05
Identities = 76/283 (26%), Positives = 101/283 (35%), Gaps = 37/283 (13%)
Query: 209 LSLMLDEGSSCPTPAKFNT--CPLPGALLQDPYFIQSPLPETNLGLSPHRARGPIISDIP 266
LS +L SS P P + P P A + LG S + P+++ +
Sbjct: 871 LSPLLPSSSSSPPPGACGSPSAPTPSAGVAATTIAGFGHFHKALGGSLSSSDSPLLTPLQ 930
Query: 267 EDSPSPEGTRLSPSSDGRREKGLALLKE---------EPASPGGD-----GEAGLALAPN 312
+ SP+ + SP+ G R GL L + P+S G GE L LA
Sbjct: 931 PGARSPQAAQPSPAPPGARG-GLGLPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATG 989
Query: 313 ECDFCVTAP-PPLPVAVVQAILEGKG--SFSPEGPRNAQQPEPGDPREIPDRGPLGLESG 369
T P P P ++V G F+P G + PG PR P P SG
Sbjct: 990 PLSTPETPPRQPEPPSLVAGASGGASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRA--SG 1047
Query: 370 DRSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEP 429
LLPP PP + + G P GR DL + +S QP +P+ G
Sbjct: 1048 SHG-SLLLPPASSPPPPQVPQRRG----TPPLTPGR--LTQDLKL-ISASQPALPQDGAQ 1099
Query: 430 ELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGP----ALGLPG 468
L SP + PL GG LG PG
Sbjct: 1100 TLR---RASPHSSGESMAAFPLFPRAGGGSGGSGSSGGLGPPG 1139
>gi|169216697 PREDICTED: heat shock transcription factor family, X
linked 2 [Homo sapiens]
Length = 423
Score = 45.8 bits (107), Expect = 9e-05
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 20 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKH-----SNMASFVRQ 74
F KLW LV I W SG +++ Q F KE+L + H +++ SF RQ
Sbjct: 99 FPQKLWRLVSSNQFSS-IWWDDSGACRVIN-QKLFEKEILKRDVAHKVFATTSIKSFFRQ 156
Query: 75 LNMYGFRK--------VVSIEQGGLLRPERDHVEFQ-HPSFVRGREQLLERVRRKV 121
LN+YGFRK I L + +EF HP F R LL R++R+V
Sbjct: 157 LNLYGFRKRRQCTFRTFTRIFSAKRLVSILNKLEFYCHPYFQRDSPHLLVRMKRRV 212
>gi|7706603 heat shock transcription factor family, X linked 1 [Homo
sapiens]
Length = 423
Score = 45.8 bits (107), Expect = 9e-05
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 20 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKH-----SNMASFVRQ 74
F KLW LV I W SG +++ Q F KE+L + H +++ SF RQ
Sbjct: 99 FPQKLWRLVSSNQFSS-IWWDDSGACRVIN-QKLFEKEILKRDVAHKVFATTSIKSFFRQ 156
Query: 75 LNMYGFRK--------VVSIEQGGLLRPERDHVEFQ-HPSFVRGREQLLERVRRKV 121
LN+YGFRK I L + +EF HP F R LL R++R+V
Sbjct: 157 LNLYGFRKRRQCTFRTFTRIFSAKRLVSILNKLEFYCHPYFQRDSPHLLVRMKRRV 212
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 45.1 bits (105), Expect = 2e-04
Identities = 73/312 (23%), Positives = 94/312 (30%), Gaps = 52/312 (16%)
Query: 221 TPAKFNTCPLPGALLQDPYFIQSPLPETNLGLSPHRARGPIISDIPEDSPSPEGTRLSPS 280
TP + + P G L P SP P + P + +P +P +
Sbjct: 277 TPPRKDAAPALGPLSSSPLATPSP------SAPPSPSAPPSLQTLPSPPATPPSQATTSL 330
Query: 281 SDGRREKGLALLKEEP----ASPGGDGEAGLALAPNECDFCVTAPPPL----------PV 326
+ + L P A+P LAL P + A PPL P
Sbjct: 331 GSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPN 390
Query: 327 AVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQ 386
A+ +L+ S P P A P P P P ++P SL P L PP
Sbjct: 391 ALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATP-----PSQAPPSLAAPPLQVPPS 445
Query: 387 ESVEP-----------------AGPLDVLGPSLQGREWT----LMDLDMELSLMQPLVPE 425
P A PL + P Q L L + P
Sbjct: 446 PPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPF 505
Query: 426 RGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPAL------GLPGALTIYSTPESR 479
L + L +P P P L APLL + P L PG T S P
Sbjct: 506 SPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLT 565
Query: 480 TASYLGPEASPS 491
A GP PS
Sbjct: 566 LALAPGPPPPPS 577
Score = 34.7 bits (78), Expect = 0.20
Identities = 72/304 (23%), Positives = 99/304 (32%), Gaps = 45/304 (14%)
Query: 200 PSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYFIQSPLPETNLGLSPHRARG 259
P G ++ +S + ++ P+PA P G LQ P T L SP R+
Sbjct: 191 PPTEGPRKSVSSASEHSTTEPSPAARRR-PSAGGGLQRPASRSLSSSATPLS-SPARS-- 246
Query: 260 PIISDIPEDSPSPEGTRLSPSSDGR-REKGLALLKEEPASPGGDGEAGLALAPNECDFCV 318
PS GT +P+ + + KGL L+ +P +A AL P
Sbjct: 247 ---------GPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRK-DAAPALGPLSSSPLA 296
Query: 319 TAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPR--------EIPDRGPLGLESGD 370
T P P + P P + G P P PL
Sbjct: 297 TPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQ 356
Query: 371 RSPESLLPPMLLQPPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEPE 430
P LPP+ P + P PL PS Q + L L P P P
Sbjct: 357 APPALALPPLQAPPSPPASPPLSPLAT--PSPQAPNALAVHL-----LQAPFSPPPSPP- 408
Query: 431 LAVKGLNSP--SPGKDPTLGAPLLLDVQAALGGPALGLPGALTIYSTPESRTASYLGPEA 488
V+ SP SP P+ P +L P L +P P + + P A
Sbjct: 409 --VQAPFSPPASPPVSPSATPP--SQAPPSLAAPPLQVP--------PSPPASPPMSPSA 456
Query: 489 SPSP 492
+P P
Sbjct: 457 TPPP 460
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 44.3 bits (103), Expect = 3e-04
Identities = 77/272 (28%), Positives = 99/272 (36%), Gaps = 63/272 (23%)
Query: 247 ETNLGLSPHRARGPIISDIP-------EDSPSPE----------GTRLSPSSD------- 282
ET L P P ++ P EDS S E G + P SD
Sbjct: 680 ETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDG 739
Query: 283 ------GR-REKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVV------ 329
GR +E GL K EP PG G AG +P C+ PP LP V
Sbjct: 740 SVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP-----CLPGPPGLPCPVSPLGPAG 794
Query: 330 QAILEGKGSFSPEGPRN-----AQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQP 384
A+ G P GP + EPGDP E G G + +P + P
Sbjct: 795 PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGD 854
Query: 385 P----QESVEPAGPLDVLGPSLQGREWTLMDLDME--LSLMQPLVPERGEPELAVKGLNS 438
P + P GP GPS + + T +D++ ++ L RG P
Sbjct: 855 PGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFP-------GP 907
Query: 439 PSPGKDPTL-GAPLLLDVQAA-LGGPALGLPG 468
P P P L G P V ++ + GPA GLPG
Sbjct: 908 PGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG 938
Score = 29.6 bits (65), Expect = 6.5
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 286 EKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPR 345
++G A K E PGG G G +L PP P + G P+G
Sbjct: 1329 DRGDAGQKGERGEPGGGGFFGSSLP---------GPPGPPGPRGYPGIPG-----PKGES 1374
Query: 346 NAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGP 400
QP P P+ P G G + P PP P ++++ GP GP
Sbjct: 1375 IRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1429
Score = 29.3 bits (64), Expect = 8.5
Identities = 69/258 (26%), Positives = 81/258 (31%), Gaps = 71/258 (27%)
Query: 254 PHRARGPIISDIPEDSPSPEGTRLSPSSDGRREK-------GLALLKEEPASPGGDGEAG 306
P R P +P P P G P G++ G K P G GE+G
Sbjct: 940 PGREGPPGFPGLP-GPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESG 998
Query: 307 LALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPDR----G 362
LA AP A PP G P GP P PG P D G
Sbjct: 999 LAGAPG------PAGPP-------------GPPGPPGP-----PGPGLPAGFDDMEGSGG 1034
Query: 363 PLGLES----GDRSPESLLPPMLLQPPQESVEPAGPLDVLG------PSLQGREWTLMDL 412
P + G + P L P L P P +V P L GRE
Sbjct: 1035 PFWSTARSADGPQGPPGL--PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGRE------ 1086
Query: 413 DMELSLMQPLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTI 472
+ P P+ KG PGKD +G P L GP G PG +
Sbjct: 1087 ----GIAGPQGPKGDRGSRGEKG----DPGKD-GVGQP-------GLPGPP-GPPGPVVY 1129
Query: 473 YSTPESRTASYLGPEASP 490
S + S GPE P
Sbjct: 1130 VSEQDGSVLSVPGPEGRP 1147
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 44.3 bits (103), Expect = 3e-04
Identities = 77/272 (28%), Positives = 99/272 (36%), Gaps = 63/272 (23%)
Query: 247 ETNLGLSPHRARGPIISDIP-------EDSPSPE----------GTRLSPSSD------- 282
ET L P P ++ P EDS S E G + P SD
Sbjct: 265 ETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDG 324
Query: 283 ------GR-REKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVV------ 329
GR +E GL K EP PG G AG +P C+ PP LP V
Sbjct: 325 SVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP-----CLPGPPGLPCPVSPLGPAG 379
Query: 330 QAILEGKGSFSPEGPRN-----AQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQP 384
A+ G P GP + EPGDP E G G + +P + P
Sbjct: 380 PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGD 439
Query: 385 P----QESVEPAGPLDVLGPSLQGREWTLMDLDME--LSLMQPLVPERGEPELAVKGLNS 438
P + P GP GPS + + T +D++ ++ L RG P
Sbjct: 440 PGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFP-------GP 492
Query: 439 PSPGKDPTL-GAPLLLDVQAA-LGGPALGLPG 468
P P P L G P V ++ + GPA GLPG
Sbjct: 493 PGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG 523
Score = 29.6 bits (65), Expect = 6.5
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 286 EKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPR 345
++G A K E PGG G G +L PP P + G P+G
Sbjct: 914 DRGDAGQKGERGEPGGGGFFGSSLP---------GPPGPPGPRGYPGIPG-----PKGES 959
Query: 346 NAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGP 400
QP P P+ P G G + P PP P ++++ GP GP
Sbjct: 960 IRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014
Score = 29.3 bits (64), Expect = 8.5
Identities = 69/258 (26%), Positives = 81/258 (31%), Gaps = 71/258 (27%)
Query: 254 PHRARGPIISDIPEDSPSPEGTRLSPSSDGRREK-------GLALLKEEPASPGGDGEAG 306
P R P +P P P G P G++ G K P G GE+G
Sbjct: 525 PGREGPPGFPGLP-GPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESG 583
Query: 307 LALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPDR----G 362
LA AP A PP G P GP P PG P D G
Sbjct: 584 LAGAPG------PAGPP-------------GPPGPPGP-----PGPGLPAGFDDMEGSGG 619
Query: 363 PLGLES----GDRSPESLLPPMLLQPPQESVEPAGPLDVLG------PSLQGREWTLMDL 412
P + G + P L P L P P +V P L GRE
Sbjct: 620 PFWSTARSADGPQGPPGL--PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGRE------ 671
Query: 413 DMELSLMQPLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTI 472
+ P P+ KG PGKD +G P L GP G PG +
Sbjct: 672 ----GIAGPQGPKGDRGSRGEKG----DPGKD-GVGQP-------GLPGPP-GPPGPVVY 714
Query: 473 YSTPESRTASYLGPEASP 490
S + S GPE P
Sbjct: 715 VSEQDGSVLSVPGPEGRP 732
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 44.3 bits (103), Expect = 3e-04
Identities = 77/272 (28%), Positives = 99/272 (36%), Gaps = 63/272 (23%)
Query: 247 ETNLGLSPHRARGPIISDIP-------EDSPSPE----------GTRLSPSSD------- 282
ET L P P ++ P EDS S E G + P SD
Sbjct: 445 ETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDG 504
Query: 283 ------GR-REKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVV------ 329
GR +E GL K EP PG G AG +P C+ PP LP V
Sbjct: 505 SVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSP-----CLPGPPGLPCPVSPLGPAG 559
Query: 330 QAILEGKGSFSPEGPRN-----AQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQP 384
A+ G P GP + EPGDP E G G + +P + P
Sbjct: 560 PALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGDKGD 619
Query: 385 P----QESVEPAGPLDVLGPSLQGREWTLMDLDME--LSLMQPLVPERGEPELAVKGLNS 438
P + P GP GPS + + T +D++ ++ L RG P
Sbjct: 620 PGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFP-------GP 672
Query: 439 PSPGKDPTL-GAPLLLDVQAA-LGGPALGLPG 468
P P P L G P V ++ + GPA GLPG
Sbjct: 673 PGPPGVPGLPGEPGRFGVNSSDVPGPA-GLPG 703
Score = 29.6 bits (65), Expect = 6.5
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 286 EKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPR 345
++G A K E PGG G G +L PP P + G P+G
Sbjct: 1094 DRGDAGQKGERGEPGGGGFFGSSLP---------GPPGPPGPRGYPGIPG-----PKGES 1139
Query: 346 NAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGP 400
QP P P+ P G G + P PP P ++++ GP GP
Sbjct: 1140 IRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1194
Score = 29.3 bits (64), Expect = 8.5
Identities = 69/258 (26%), Positives = 81/258 (31%), Gaps = 71/258 (27%)
Query: 254 PHRARGPIISDIPEDSPSPEGTRLSPSSDGRREK-------GLALLKEEPASPGGDGEAG 306
P R P +P P P G P G++ G K P G GE+G
Sbjct: 705 PGREGPPGFPGLP-GPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESG 763
Query: 307 LALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIPDR----G 362
LA AP A PP G P GP P PG P D G
Sbjct: 764 LAGAPG------PAGPP-------------GPPGPPGP-----PGPGLPAGFDDMEGSGG 799
Query: 363 PLGLES----GDRSPESLLPPMLLQPPQESVEPAGPLDVLG------PSLQGREWTLMDL 412
P + G + P L P L P P +V P L GRE
Sbjct: 800 PFWSTARSADGPQGPPGL--PGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGRE------ 851
Query: 413 DMELSLMQPLVPERGEPELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGPALGLPGALTI 472
+ P P+ KG PGKD +G P L GP G PG +
Sbjct: 852 ----GIAGPQGPKGDRGSRGEKG----DPGKD-GVGQP-------GLPGPP-GPPGPVVY 894
Query: 473 YSTPESRTASYLGPEASP 490
S + S GPE P
Sbjct: 895 VSEQDGSVLSVPGPEGRP 912
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 42.4 bits (98), Expect = 0.001
Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 20/119 (16%)
Query: 266 PEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPG------GDGEAGLALAPNECDFCVT 319
P+ P G +P G R GL + P +PG DG G A P
Sbjct: 285 PKGEPGSPGENGAPGQMGPR--GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTG--PA 340
Query: 320 APPPLPVAVVQAILEGKGSFSPEGPRNAQQP-----EPGDPREIPDRGPLGLESGDRSP 373
PP P AV KG P+GPR ++ P EPG P GP G D P
Sbjct: 341 GPPGFPGAV-----GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Score = 33.9 bits (76), Expect = 0.35
Identities = 72/240 (30%), Positives = 92/240 (38%), Gaps = 31/240 (12%)
Query: 269 SPSPEGTRLSPSSDGRREK----GLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPL 324
SP P G + SP GR + G L P SPG DG+ G P D PP
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG-PPGPAGQD-GRPGPPGP 570
Query: 325 PVAVVQAILEG----KGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPM 380
P A QA + G KG+ G + ++ PG P + G G E+G + P P
Sbjct: 571 PGARGQAGVMGFPGPKGAAGEPG-KAGERGVPGPPGAVGPAGKDG-EAGAQGPPGPAGPA 628
Query: 381 LLQPPQESV---------EPAGPLDVLG-PSLQGREWTLMDLDMELSLMQPLVPERGEP- 429
+ Q PAGP G P QG + D+ ERG P
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG-----VPGDLGAPGPSGARGERGFPG 683
Query: 430 ELAVKGLNSPSPGKDPTLGAPLLLDVQAALGGP-ALGLPGALTIYSTPESRTASYL-GPE 487
E V+G P+ G GAP + G P A G GA + P R A+ L GP+
Sbjct: 684 ERGVQGPPGPA-GPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPK 742
Score = 33.1 bits (74), Expect = 0.59
Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Query: 295 EPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGD 354
E SPG DG AG AP P P +A + ++ G G PG
Sbjct: 933 EKGSPGADGPAG---APG-------TPGPQGIAGQRGVVGLPGQRGERGFPGL----PGP 978
Query: 355 PREIPDRGPLGLESGDRSPESLL-PPMLLQPPQESVEPAGP 394
E +GP G SG+R P + PP L PP ES P
Sbjct: 979 SGEPGKQGPSGA-SGERGPPGPMGPPGLAGPPGESGREGAP 1018
Score = 29.3 bits (64), Expect = 8.5
Identities = 42/137 (30%), Positives = 48/137 (35%), Gaps = 23/137 (16%)
Query: 257 ARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEP------ASPGGDGEAGLALA 310
ARGP P P P+G P + G KG K EP PG GE G A
Sbjct: 414 ARGPSGPQGPGGPPGPKGNSGEPGAPG--SKGDTGAKGEPGPVGVQGPPGPAGEEGKRGA 471
Query: 311 PNECDFCVTAPPP----------LPVAVVQAILEG----KGSFSPEGPRNAQQPEPGDPR 356
E PP P A A +G +GS P GP+ + E G P
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS-PGEAGRPG 530
Query: 357 EIPDRGPLGLESGDRSP 373
E G GL SP
Sbjct: 531 EAGLPGAKGLTGSPGSP 547
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 42.4 bits (98), Expect = 0.001
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 8/161 (4%)
Query: 242 QSPLPETNLGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPAS--P 299
+SP P L P + + ++ PSPE ++ + S K + + + + + P
Sbjct: 144 ESPKPTPLTPLEPQKPGSVVSPELQTPLPSPEPSKPASVSSPEPPKSVPVCESQKLAPVP 203
Query: 300 GGDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPRNAQQPEPGDPREIP 359
+ + ++P ++ P P + L + SPE P A PEP P
Sbjct: 204 SPEPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGP---- 259
Query: 360 DRGPLGLESGDRSPESLLPPMLLQPPQESVEPAGPLDVLGP 400
P +S + P P ES EP P + P
Sbjct: 260 --SPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSP 298
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 42.4 bits (98), Expect = 0.001
Identities = 55/210 (26%), Positives = 77/210 (36%), Gaps = 39/210 (18%)
Query: 194 GPLQAGPSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYFIQSPLPETNLGLS 253
GP QA P + K+ E S P PG + + SP +L ++
Sbjct: 231 GPAQAFPGHLPLPTKVEAKAPETPSENLRTGLELAPAPGRVN-----VVSP----SLEVA 281
Query: 254 PHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPGGDGEAGLALAPNE 313
P +G S P+ P EGTRL+P P PG G A A +
Sbjct: 282 PGAGQGAS-SSRPDPEPLEEGTRLTPGPG-------------PQCPGPPGLPAQARATHS 327
Query: 314 CDFCVTAPPPLPVAVV------QAILEGKGSFSP----EGPRNAQQPEPGDPREIPDRGP 363
PP + + + + ++ G+GS P E P AQ + G P
Sbjct: 328 GG---ETPPRISIHIQEMDTPGEMLMTGRGSLGPTLTTEAPAAAQPGKQGPPGTGRCLQA 384
Query: 364 LGLESGDRSPESLLPPMLLQPPQESVEPAG 393
G E G+++PE L P QES P G
Sbjct: 385 PGTEPGEQTPEGARE---LSPLQESSSPGG 411
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 41.6 bits (96), Expect = 0.002
Identities = 62/237 (26%), Positives = 79/237 (33%), Gaps = 31/237 (13%)
Query: 217 SSCPTPAKFNTCPLPGALLQDPYFIQSPLPETNLGL--SPHRARGPIISDIPEDSPSPEG 274
S P P + P + P I P+P T + SPH P + P PSP
Sbjct: 159 SGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQ-PSPGP 217
Query: 275 TRLSPSSDGRREKGLA--LLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAI 332
T P G R L +++ P S L P PPP P V
Sbjct: 218 T--PPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRP 275
Query: 333 LEGKGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPA 392
+ + P P+N + P P PR S S PP PP P
Sbjct: 276 SIHREAVPPPPPQNNKPPVPSTPRP--------------SASSQAPP----PPPPPSRPG 317
Query: 393 GPLDVLGPSLQGREWT--LMDLDMELSLMQPLVPERGE--PELAVKGLNSPSPGKDP 445
P L PS G + T L ++ LS P +P G P P P +DP
Sbjct: 318 PP--PLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDP 372
Score = 35.8 bits (81), Expect = 0.091
Identities = 70/274 (25%), Positives = 90/274 (32%), Gaps = 56/274 (20%)
Query: 195 PLQAGPSNAG------GKRKLSLMLDEGSSCPTPAKF----NTCPLPGALLQDPYFIQSP 244
P+Q+ P N G G R + S PTP F T G++ Q P SP
Sbjct: 193 PIQSSPHNRGSPPVPGGPR-------QPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSP 245
Query: 245 LPETN-LGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPGGDG 303
L +P RA + D P P P G R PS +P P
Sbjct: 246 FSNRPPLPPTPSRA----LDDKPPPPPPPVGNR--PSIHREAVPPPPPQNNKPPVPSTPR 299
Query: 304 EAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPR----NAQQPEPGDPREIP 359
+ + AP PPP P L S + E PR N P P
Sbjct: 300 PSASSQAP--------PPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSP 351
Query: 360 DR-GPLGLESGDRSPESLLPPMLLQPPQES--VEPAGPLDVLGPSLQGREWTLMDLDMEL 416
R GPL +R P P + PP S + P P+ G + + T
Sbjct: 352 GRSGPLPPPPSERPP-----PPVRDPPGRSGPLPPPPPVSRNGSTSRALPAT-------- 398
Query: 417 SLMQPLVPERGEPELAVKGLNSPSPGKDPTLGAP 450
P +P R + G P P P+ GAP
Sbjct: 399 ----PQLPSRSGVDSPRSGPRPPLPPDRPSAGAP 428
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 41.6 bits (96), Expect = 0.002
Identities = 62/237 (26%), Positives = 79/237 (33%), Gaps = 31/237 (13%)
Query: 217 SSCPTPAKFNTCPLPGALLQDPYFIQSPLPETNLGL--SPHRARGPIISDIPEDSPSPEG 274
S P P + P + P I P+P T + SPH P + P PSP
Sbjct: 159 SGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQ-PSPGP 217
Query: 275 TRLSPSSDGRREKGLA--LLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAI 332
T P G R L +++ P S L P PPP P V
Sbjct: 218 T--PPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRP 275
Query: 333 LEGKGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEPA 392
+ + P P+N + P P PR S S PP PP P
Sbjct: 276 SIHREAVPPPPPQNNKPPVPSTPRP--------------SASSQAPP----PPPPPSRPG 317
Query: 393 GPLDVLGPSLQGREWT--LMDLDMELSLMQPLVPERGE--PELAVKGLNSPSPGKDP 445
P L PS G + T L ++ LS P +P G P P P +DP
Sbjct: 318 PP--PLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDP 372
Score = 35.8 bits (81), Expect = 0.091
Identities = 70/274 (25%), Positives = 90/274 (32%), Gaps = 56/274 (20%)
Query: 195 PLQAGPSNAG------GKRKLSLMLDEGSSCPTPAKF----NTCPLPGALLQDPYFIQSP 244
P+Q+ P N G G R + S PTP F T G++ Q P SP
Sbjct: 193 PIQSSPHNRGSPPVPGGPR-------QPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSP 245
Query: 245 LPETN-LGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEPASPGGDG 303
L +P RA + D P P P G R PS +P P
Sbjct: 246 FSNRPPLPPTPSRA----LDDKPPPPPPPVGNR--PSIHREAVPPPPPQNNKPPVPSTPR 299
Query: 304 EAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSFSPEGPR----NAQQPEPGDPREIP 359
+ + AP PPP P L S + E PR N P P
Sbjct: 300 PSASSQAP--------PPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSP 351
Query: 360 DR-GPLGLESGDRSPESLLPPMLLQPPQES--VEPAGPLDVLGPSLQGREWTLMDLDMEL 416
R GPL +R P P + PP S + P P+ G + + T
Sbjct: 352 GRSGPLPPPPSERPP-----PPVRDPPGRSGPLPPPPPVSRNGSTSRALPAT-------- 398
Query: 417 SLMQPLVPERGEPELAVKGLNSPSPGKDPTLGAP 450
P +P R + G P P P+ GAP
Sbjct: 399 ----PQLPSRSGVDSPRSGPRPPLPPDRPSAGAP 428
>gi|24211017 heat shock transcription factor, Y-linked 1 isoform 2
[Homo sapiens]
Length = 203
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 20 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP-----QYFKHSNMASFVRQ 74
F KLW +V + I W +GT +++++ F KE+L + F+ + SFVRQ
Sbjct: 80 FPRKLWKIV-ESDQFKSISWDENGTCIVINEEL-FKKEILETKAPYRIFQTDAIKSFVRQ 137
Query: 75 LNMYGFRKV 83
LN+YGF K+
Sbjct: 138 LNLYGFSKI 146
>gi|50312659 heat shock transcription factor, Y linked 2 isoform 2
[Homo sapiens]
Length = 203
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 20 FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLP-----QYFKHSNMASFVRQ 74
F KLW +V + I W +GT +++++ F KE+L + F+ + SFVRQ
Sbjct: 80 FPRKLWKIV-ESDQFKSISWDENGTCIVINEEL-FKKEILETKAPYRIFQTDAIKSFVRQ 137
Query: 75 LNMYGFRKV 83
LN+YGF K+
Sbjct: 138 LNLYGFSKI 146
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 41.2 bits (95), Expect = 0.002
Identities = 77/344 (22%), Positives = 103/344 (29%), Gaps = 56/344 (16%)
Query: 195 PLQAGPSNAGGKRKLSLMLDEGSSCPTPAKFNTCPLPGALLQDPYF------IQSPLPET 248
P Q P L + + P+P+ P L P+ + +PLP
Sbjct: 282 PPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLA 341
Query: 249 NLGLSPHRARGPIISDIPEDSPSPEGTRLSPSSDGRREKGLALLKEEP----ASPGGDGE 304
P + P + +P +P + + + L P A+P
Sbjct: 342 ----PPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAP 397
Query: 305 AGLALAPNECDFCVTAPPPL----------PVAVVQAILEGKGSFSPEGPRNAQQPEPGD 354
LAL P + A PPL P A+ +L+ S P P A P
Sbjct: 398 PALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPAS 457
Query: 355 PREIPDRGPLGLESGDRSPESLLPPMLLQPPQESVEP-----------------AGPLDV 397
P P P ++P SL P L PP P A PL +
Sbjct: 458 PPVSPSATP-----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQL 512
Query: 398 LGPSLQGREWT----LMDLDMELSLMQPLVPERGEPELAVKGLNSPSPGKDPTLGAPLLL 453
P Q L L + P L + L +P P P L APLL
Sbjct: 513 AKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQ 572
Query: 454 DVQAALGGPAL------GLPGALTIYSTPESRTASYLGPEASPS 491
+ P L PG T S P A GP PS
Sbjct: 573 VPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPS 616
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 41.2 bits (95), Expect = 0.002
Identities = 58/192 (30%), Positives = 70/192 (36%), Gaps = 40/192 (20%)
Query: 270 PSPEGTRLSPSSDGRREKGLALLKEEPAS---PGGDGEAGLALAPNECDFCVTAPPPLPV 326
P P G R P G EKG + EP PG DGE G P + P P
Sbjct: 269 PGPPGIRGPPGPPGG-EKGEKGEQGEPGKRGKPGKDGENGQPGIPG-----LPGDPGYPG 322
Query: 327 AVVQAILEG-KGSFSPEGPRNAQQPEPGDPREIPDRGPLGL-----ESGDRS-PESLLPP 379
+ +G KG P GP P PG I ++G +GL E G+R P PP
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPP 382
Query: 380 MLLQPPQESV-EPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEPELAVKGLNS 438
L PP +V P GP P G D G P +++ G
Sbjct: 383 GLPGPPGAAVMGPPGP-----PGFPGERGQKGD--------------EGPPGISIPG--- 420
Query: 439 PSPGKDPTLGAP 450
PG D GAP
Sbjct: 421 -PPGLDGQPGAP 431
Score = 34.3 bits (77), Expect = 0.27
Identities = 61/226 (26%), Positives = 79/226 (34%), Gaps = 31/226 (13%)
Query: 270 PSPEGTRLSPSSDGRREKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVV 329
P +G + P GL K EP PG G G+ + D + P P A
Sbjct: 1059 PGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVG--DPGLPGLPGTPGAKG 1116
Query: 330 QAILEG-KGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQES 388
Q L G G+ P GP+ P PG+P + GP+G P PP E
Sbjct: 1117 QPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQP---------GPPGEK 1166
Query: 389 VEPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEP-ELAVKGLNSPSPGKDPTL 447
+P G + GP+ Q E P P G P + GL S G
Sbjct: 1167 GKP-GQDGIPGPAGQKGE--------------PGQPGFGNPGPPGLPGL-SGQKGDGGLP 1210
Query: 448 GAPLLLDVQAALGGPAL-GLPGALTIYSTPESRTASYLGPEASPSP 492
G P + G P G PG P S + GP+ +P P
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGP 1256
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 41.2 bits (95), Expect = 0.002
Identities = 58/192 (30%), Positives = 70/192 (36%), Gaps = 40/192 (20%)
Query: 270 PSPEGTRLSPSSDGRREKGLALLKEEPAS---PGGDGEAGLALAPNECDFCVTAPPPLPV 326
P P G R P G EKG + EP PG DGE G P + P P
Sbjct: 269 PGPPGIRGPPGPPGG-EKGEKGEQGEPGKRGKPGKDGENGQPGIPG-----LPGDPGYPG 322
Query: 327 AVVQAILEG-KGSFSPEGPRNAQQPEPGDPREIPDRGPLGL-----ESGDRS-PESLLPP 379
+ +G KG P GP P PG I ++G +GL E G+R P PP
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPP 382
Query: 380 MLLQPPQESV-EPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEPELAVKGLNS 438
L PP +V P GP P G D G P +++ G
Sbjct: 383 GLPGPPGAAVMGPPGP-----PGFPGERGQKGD--------------EGPPGISIPG--- 420
Query: 439 PSPGKDPTLGAP 450
PG D GAP
Sbjct: 421 -PPGLDGQPGAP 431
Score = 34.3 bits (77), Expect = 0.27
Identities = 61/226 (26%), Positives = 79/226 (34%), Gaps = 31/226 (13%)
Query: 270 PSPEGTRLSPSSDGRREKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVV 329
P +G + P GL K EP PG G G+ + D + P P A
Sbjct: 1059 PGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVG--DPGLPGLPGTPGAKG 1116
Query: 330 QAILEG-KGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQES 388
Q L G G+ P GP+ P PG+P + GP+G P PP E
Sbjct: 1117 QPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQP---------GPPGEK 1166
Query: 389 VEPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEP-ELAVKGLNSPSPGKDPTL 447
+P G + GP+ Q E P P G P + GL S G
Sbjct: 1167 GKP-GQDGIPGPAGQKGE--------------PGQPGFGNPGPPGLPGL-SGQKGDGGLP 1210
Query: 448 GAPLLLDVQAALGGPAL-GLPGALTIYSTPESRTASYLGPEASPSP 492
G P + G P G PG P S + GP+ +P P
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGP 1256
Score = 30.0 bits (66), Expect = 5.0
Identities = 36/132 (27%), Positives = 47/132 (35%), Gaps = 35/132 (26%)
Query: 269 SPSPEGTRLSPSSDGRR-EKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVA 327
+P P G P G++ + GL + P PG GE G P V PP P +
Sbjct: 1191 NPGPPGL---PGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPG-----VQGPPGPPGS 1242
Query: 328 VVQAILEGKGSFSPEGPR-------------------------NAQQPE-PGDPREIPDR 361
A+ KG+ P+GP N QP PG P D+
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQ 1302
Query: 362 GPLGLESGDRSP 373
GP GL+ P
Sbjct: 1303 GPPGLQGNPGRP 1314
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 41.2 bits (95), Expect = 0.002
Identities = 58/192 (30%), Positives = 70/192 (36%), Gaps = 40/192 (20%)
Query: 270 PSPEGTRLSPSSDGRREKGLALLKEEPAS---PGGDGEAGLALAPNECDFCVTAPPPLPV 326
P P G R P G EKG + EP PG DGE G P + P P
Sbjct: 269 PGPPGIRGPPGPPGG-EKGEKGEQGEPGKRGKPGKDGENGQPGIPG-----LPGDPGYPG 322
Query: 327 AVVQAILEG-KGSFSPEGPRNAQQPEPGDPREIPDRGPLGL-----ESGDRS-PESLLPP 379
+ +G KG P GP P PG I ++G +GL E G+R P PP
Sbjct: 323 EPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPP 382
Query: 380 MLLQPPQESV-EPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEPELAVKGLNS 438
L PP +V P GP P G D G P +++ G
Sbjct: 383 GLPGPPGAAVMGPPGP-----PGFPGERGQKGD--------------EGPPGISIPG--- 420
Query: 439 PSPGKDPTLGAP 450
PG D GAP
Sbjct: 421 -PPGLDGQPGAP 431
Score = 34.3 bits (77), Expect = 0.27
Identities = 61/226 (26%), Positives = 79/226 (34%), Gaps = 31/226 (13%)
Query: 270 PSPEGTRLSPSSDGRREKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVV 329
P +G + P GL K EP PG G G+ + D + P P A
Sbjct: 1059 PGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVG--DPGLPGLPGTPGAKG 1116
Query: 330 QAILEG-KGSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQES 388
Q L G G+ P GP+ P PG+P + GP+G P PP E
Sbjct: 1117 QPGLPGFPGTPGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQP---------GPPGEK 1166
Query: 389 VEPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGEP-ELAVKGLNSPSPGKDPTL 447
+P G + GP+ Q E P P G P + GL S G
Sbjct: 1167 GKP-GQDGIPGPAGQKGE--------------PGQPGFGNPGPPGLPGL-SGQKGDGGLP 1210
Query: 448 GAPLLLDVQAALGGPAL-GLPGALTIYSTPESRTASYLGPEASPSP 492
G P + G P G PG P S + GP+ +P P
Sbjct: 1211 GIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGP 1256
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,824,813
Number of Sequences: 37866
Number of extensions: 1675124
Number of successful extensions: 5937
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 396
Number of HSP's that attempted gapping in prelim test: 5347
Number of HSP's gapped (non-prelim): 981
length of query: 492
length of database: 18,247,518
effective HSP length: 106
effective length of query: 386
effective length of database: 14,233,722
effective search space: 5494216692
effective search space used: 5494216692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.