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Search of human proteins with 18152771
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18152771 hypothetical protein LOC128653 [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18152771 hypothetical protein LOC128653 [Homo sapiens] 337 4e-93
gi|41349446 stromal interaction molecule 2 [Homo sapiens] 33 0.086
gi|8394499 ubiquitin associated protein 1 [Homo sapiens] 30 0.73
gi|89035075 PREDICTED: similar to hCG1730248 [Homo sapiens] 30 0.95
gi|23592232 mediator complex subunit 19 [Homo sapiens] 30 0.95
gi|239755208 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|23463303 purinergic receptor P2Y11 [Homo sapiens] 30 1.2
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 30 1.2
gi|99028871 PPAN-P2RY11 protein [Homo sapiens] 30 1.2
gi|55741677 SET domain containing 1A [Homo sapiens] 29 1.6
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 29 1.6
gi|151301204 unc-51-like kinase 4 [Homo sapiens] 29 2.1
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 29 2.1
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 29 2.1
gi|195947374 claudin 5 [Homo sapiens] 29 2.1
gi|195947372 claudin 5 [Homo sapiens] 29 2.1
gi|89034219 PREDICTED: similar to hCG1730248 [Homo sapiens] 28 2.8
gi|19924103 synapsin II isoform IIa [Homo sapiens] 28 2.8
gi|19924101 synapsin II isoform IIb [Homo sapiens] 28 2.8
gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens] 28 2.8
gi|193083143 SH3 domain containing 19 isoform b [Homo sapiens] 28 2.8
gi|193083141 SH3 domain containing 19 isoform a [Homo sapiens] 28 2.8
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 28 2.8
gi|44662807 hypothetical protein LOC388407 [Homo sapiens] 28 2.8
gi|45433499 zinc finger, DHHC-type containing 18 [Homo sapiens] 28 2.8
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 28 3.6
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 28 3.6
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 28 3.6
gi|46560555 transmembrane protein 132E [Homo sapiens] 28 3.6
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 28 3.6
>gi|18152771 hypothetical protein LOC128653 [Homo sapiens]
Length = 165
Score = 337 bits (863), Expect = 4e-93
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MTRLCLPRPEAREDPIPVPPRGLGAGEGSGSPVRPPVSTWGPSWAQLLDSVLWLGALGLT 60
MTRLCLPRPEAREDPIPVPPRGLGAGEGSGSPVRPPVSTWGPSWAQLLDSVLWLGALGLT
Sbjct: 1 MTRLCLPRPEAREDPIPVPPRGLGAGEGSGSPVRPPVSTWGPSWAQLLDSVLWLGALGLT 60
Query: 61 IQAVFSTTGPALLLLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGEGPGQQEALLLQ 120
IQAVFSTTGPALLLLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGEGPGQQEALLLQ
Sbjct: 61 IQAVFSTTGPALLLLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGEGPGQQEALLLQ 120
Query: 121 MGTVSGQLSLQDALLLLLMGLGPLLRACGMPLTLLGLAFCLHPWA 165
MGTVSGQLSLQDALLLLLMGLGPLLRACGMPLTLLGLAFCLHPWA
Sbjct: 121 MGTVSGQLSLQDALLLLLMGLGPLLRACGMPLTLLGLAFCLHPWA 165
>gi|41349446 stromal interaction molecule 2 [Homo sapiens]
Length = 833
Score = 33.5 bits (75), Expect = 0.086
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 8 RPEAREDPIPVPPRGLGAGEGSGSPVR---------PPVSTWGPSWAQLLDSVLWLGALG 58
RPE + V PRG G + +G+P+R P ST GP+W LL W L
Sbjct: 32 RPEESPAAV-VAPRGAGELQAAGAPLRFHPASPRRLHPASTPGPAWGWLLRRRRWAALLV 90
Query: 59 LTIQAVFSTTGPALL 73
L + + G L+
Sbjct: 91 LGLLVAGAADGCELV 105
>gi|8394499 ubiquitin associated protein 1 [Homo sapiens]
Length = 502
Score = 30.4 bits (67), Expect = 0.73
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 37 VSTWGPSWAQLLDSVLWLGALGLTIQAVFSTTGPALLLLLVSFLTFDLLHRPAGH-TLPQ 95
V T GP AQLLD+ L G G +Q L L + L F LH+P G TLPQ
Sbjct: 185 VGTTGPIMAQLLDNNLPRGGSGSVLQ-----DEEVLASLERATLDFKPLHKPNGFITLPQ 239
>gi|89035075 PREDICTED: similar to hCG1730248 [Homo sapiens]
Length = 156
Score = 30.0 bits (66), Expect = 0.95
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 9 PEA-REDPIPVPPRGLGAGEGSGSPVRPPVSTWGPSWAQLL 48
PEA RE+ P PP GLG G G P R P+ G W + L
Sbjct: 45 PEAGREEEQPPPPAGLGCG-ARGEPGRGPLE-HGQQWKKFL 83
>gi|23592232 mediator complex subunit 19 [Homo sapiens]
Length = 194
Score = 30.0 bits (66), Expect = 0.95
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 11 AREDPIPVPPRGLGAGEGSGSPVRPPVSTWGPSWA 45
A+ DP P PP LG G G P PP + GP A
Sbjct: 10 AQADP-PPPPTALGFGPGKPPPPPPPPAGGGPGTA 43
>gi|239755208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 307
Score = 29.6 bits (65), Expect = 1.2
Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 120 QMGTVSGQLSLQDALLLLLMGLG----PLLRACGMPLTLLGLAFCLHP 163
Q G G +L L LL+GLG PLLRA G LL A LHP
Sbjct: 76 QGGPGGGHRALARTRLALLLGLGRAACPLLRAPGEVHPLLVHALSLHP 123
>gi|23463303 purinergic receptor P2Y11 [Homo sapiens]
Length = 374
Score = 29.6 bits (65), Expect = 1.2
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 74 LLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGE-GPGQQEALLLQMGTVSGQLSLQD 132
LL + L+F L RP QGAG + EA + +GT L+
Sbjct: 159 LLAMPTLSFSHLKRP---------------QQGAGNCSVARPEACIKCLGTADHGLAAYR 203
Query: 133 ALLLLLMGLGPLLRACGMPLTLLGLAF 159
A L+L GLG CG+PL L A+
Sbjct: 204 AYSLVLAGLG-----CGLPLLLTLAAY 225
>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
Length = 1016
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 18 VPPRGLGAGEGSGSPVRPPV---STWGPSWAQLLDSV 51
+PPRG GAG G G P R P+ S +G S L ++
Sbjct: 607 LPPRGPGAGPGVGGPSRGPLDGFSVFGGSSGSALQAL 643
>gi|99028871 PPAN-P2RY11 protein [Homo sapiens]
Length = 794
Score = 29.6 bits (65), Expect = 1.2
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 74 LLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGE-GPGQQEALLLQMGTVSGQLSLQD 132
LL + L+F L RP QGAG + EA + +GT L+
Sbjct: 579 LLAMPTLSFSHLKRP---------------QQGAGNCSVARPEACIKCLGTADHGLAAYR 623
Query: 133 ALLLLLMGLGPLLRACGMPLTLLGLAF 159
A L+L GLG CG+PL L A+
Sbjct: 624 AYSLVLAGLG-----CGLPLLLTLAAY 645
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 29.3 bits (64), Expect = 1.6
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 8 RPEAREDPIPVPPR-GLGAGEGSGSPVRPPVST 39
RP A E P P PP G G G G SP R V T
Sbjct: 426 RPPASEAPPPEPPEPGGGGGGGGPSPEREEVRT 458
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 29.3 bits (64), Expect = 1.6
Identities = 52/172 (30%), Positives = 65/172 (37%), Gaps = 24/172 (13%)
Query: 7 PRPEAREDPIPVPPRGLGAGEGSGSPV-----RPPVSTWGPSWAQLLDSVLWLGALGLTI 61
P PE E+ P G G G P PP + P A L +L G L
Sbjct: 897 PVPEEEEEEEEGAPIGTPRDPGDGCPSPDIPPEPPPTHLRPCPASQLPGLLSHGLLAGLS 956
Query: 62 QAVFSTTGPALLLLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGEG----------P 111
AV S++G LLLL L LL G L L G G P
Sbjct: 957 FAVGSSSGLLPLLLL---LLLPLLAAQGGGGLQAALLALEVGLVGLGASYLLLCTALHLP 1013
Query: 112 GQQEALLLQ---MGTVSGQLSLQDALLLLLMGLGP--LLRACGMPLTLLGLA 158
LL Q +G V G LS + L+ + +GLG LL G+ L L+ +A
Sbjct: 1014 SSLFLLLAQGTALGAVLG-LSWRRGLMGVPLGLGAAWLLAWPGLALPLVAMA 1064
>gi|151301204 unc-51-like kinase 4 [Homo sapiens]
Length = 1275
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 79 FLTFDLLHRPAGHTLPQRKLLTRGQSQGAGEGPGQQEALLLQMGTVSGQLSLQDALL 135
F D+LH +T +L + Q G+GE P E LLL ++ +SL LL
Sbjct: 1109 FSLLDILHSMLTYTSGIVRLALQAQKSGSGEDPQAAEDLLLLNRPLTDLISLLIPLL 1165
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 28.9 bits (63), Expect = 2.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 7 PRPEAREDPIPVPPRGLGAGEGSGSPVRPPV 37
PRP+ + PVPP+G AG PP+
Sbjct: 163 PRPKPKPKKSPVPPKGATAGASHKGDEVPPI 193
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 28.9 bits (63), Expect = 2.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 7 PRPEAREDPIPVPPRGLGAGEGSGSPVRPPV 37
PRP+ + PVPP+G AG PP+
Sbjct: 174 PRPKPKPKKSPVPPKGATAGASHKGDEVPPI 204
>gi|195947374 claudin 5 [Homo sapiens]
Length = 303
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 102 GQSQGAGE-GPGQQEALLLQMGTVS-GQLSLQD-ALLLLLMGLGPLLRACGMPL 152
G +QGA + G G L +++ ++ G +L+ L+L L+G G L+ ACG+P+
Sbjct: 61 GPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPM 114
>gi|195947372 claudin 5 [Homo sapiens]
Length = 303
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 102 GQSQGAGE-GPGQQEALLLQMGTVS-GQLSLQD-ALLLLLMGLGPLLRACGMPL 152
G +QGA + G G L +++ ++ G +L+ L+L L+G G L+ ACG+P+
Sbjct: 61 GPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPM 114
>gi|89034219 PREDICTED: similar to hCG1730248 [Homo sapiens]
Length = 156
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 12 REDPIPVPPRGLGAGEGSGSPVRPPVSTWGPSWAQLL 48
RE+ P PP GLG G G P R P+ G W + L
Sbjct: 49 REEEQPPPPAGLGCG-ARGEPGRGPLE-HGQQWKKFL 83
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 6 LPRPEAREDPIPVPPRGLGAGEGSGSPVRPPVSTWGP 42
L RPE ++ P P PP G GA S + PP ++ GP
Sbjct: 26 LQRPEPQQPP-PPPPPGPGAASASAA---PPTASPGP 58
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 6 LPRPEAREDPIPVPPRGLGAGEGSGSPVRPPVSTWGP 42
L RPE ++ P P PP G GA S + PP ++ GP
Sbjct: 26 LQRPEPQQPP-PPPPPGPGAASASAA---PPTASPGP 58
>gi|193083145 SH3 domain containing 19 isoform c [Homo sapiens]
Length = 731
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 9 PEAREDPIPVPPRGLGAGE-------GSGSPVRPPV 37
P A P+ VPPR GA + G G P PPV
Sbjct: 157 PSAPLKPVTVPPRLAGASQAKAYKSLGEGPPANPPV 192
>gi|193083143 SH3 domain containing 19 isoform b [Homo sapiens]
Length = 767
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 9 PEAREDPIPVPPRGLGAGE-------GSGSPVRPPV 37
P A P+ VPPR GA + G G P PPV
Sbjct: 157 PSAPLKPVTVPPRLAGASQAKAYKSLGEGPPANPPV 192
>gi|193083141 SH3 domain containing 19 isoform a [Homo sapiens]
Length = 790
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 9 PEAREDPIPVPPRGLGAGE-------GSGSPVRPPV 37
P A P+ VPPR GA + G G P PPV
Sbjct: 157 PSAPLKPVTVPPRLAGASQAKAYKSLGEGPPANPPV 192
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 7 PRPEAREDP-IPVPPRGLGAGEGSGSPVRP--PVSTWGP 42
P+PE ++ P +P PP G EG+G+ P P ++W P
Sbjct: 523 PKPERKQQPQLPRPPT-TGGSEGAGAAPCPPNPANSWVP 560
>gi|44662807 hypothetical protein LOC388407 [Homo sapiens]
Length = 251
Score = 28.5 bits (62), Expect = 2.8
Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 34/128 (26%)
Query: 20 PRGLGAGEGSGSPVRPPVSTWGPSWAQLLDSVLWLGALGLTIQAVFSTTGPALLLLLV-- 77
P LG SGSP PP S +G +V G + F +G A L LL+
Sbjct: 73 PALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDG 132
Query: 78 ----------------------SFLTFDLLHRPAGHT----------LPQRKLLTRGQSQ 105
S ++ L PAG T L R+L T +
Sbjct: 133 AGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDG 192
Query: 106 GAGEGPGQ 113
AG+GPG+
Sbjct: 193 AAGQGPGR 200
>gi|45433499 zinc finger, DHHC-type containing 18 [Homo sapiens]
Length = 388
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 7 PRPEAREDPIPVPPR----GLGAGEGSGSPVRPPVSTW 40
P P P PPR G G+G GSGS R P W
Sbjct: 33 PGPGPAPPAAPAPPRWSSSGSGSGSGSGSLGRRPRRKW 70
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 28.1 bits (61), Expect = 3.6
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 25 AGEGSGSPVRPPVSTWGPS--WAQLLDSVLWLGALGLTIQAVFSTTGPALLLLLVSFLTF 82
+G SG+P P +G S + + DS+ G G + P L L T+
Sbjct: 1594 SGAQSGTP---PTGLYGHSAVYHEATDSLYVFG--GFRFHVELAAPSPELYSLHCPDRTW 1648
Query: 83 DLLHRPAGHTLPQRKLLTRGQSQGAGEGPGQQ 114
LL P+ R RG S+G G+ PG+Q
Sbjct: 1649 SLL-APSQGAKRDRMRNVRGSSRGLGQVPGEQ 1679
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 28.1 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 100 TRGQSQGAGEGPGQQEALLLQMGTVSGQLSLQDA 133
T G G GEG G+ EA+L++ + L DA
Sbjct: 523 TEGDGDGDGEGEGEGEAVLMEEDLIQQSLDDYDA 556
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 28.1 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 100 TRGQSQGAGEGPGQQEALLLQMGTVSGQLSLQDA 133
T G G GEG G+ EA+L++ + L DA
Sbjct: 523 TEGDGDGDGEGEGEGEAVLMEEDLIQQSLDDYDA 556
>gi|46560555 transmembrane protein 132E [Homo sapiens]
Length = 984
Score = 28.1 bits (61), Expect = 3.6
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 15 PIPVPPRGLGAGEGSGSPVRPPVSTWGPSWAQLLDSVLWLGALGLTIQAVFSTTGPALLL 74
P P P G G+ SPV PP + P L L L + + A+ A+L+
Sbjct: 760 PAPEAP-----GPGTASPVVPPTEDFLPLPTGFLQVPRGLTDLEIGMYALLGVFCLAILV 814
Query: 75 LLVSFLTFDLLHR-----PAGHT 92
L++ + F L +R P G T
Sbjct: 815 FLINCIVFVLRYRHKRIPPEGQT 837
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 28.1 bits (61), Expect = 3.6
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 6 LPRPEAREDPIPVPPR-----GLGAGEGSGSPVRPPVSTWGPSWAQLLDSVLWLGALGLT 60
L +PE+ E+ + R L A P+ + + SWA+L S WL +
Sbjct: 1516 LSQPESDEEGYALSGRRNVDLDLAASHRKRGPMHSQLESLSDSWARLKHSRDWLCNSSYS 1575
Query: 61 IQAVFSTTGP----ALLLLLVSFLTFDLLHRPAGHTLPQRKLLTRGQS 104
++ F T L+ +VSF++ D+ + P G P+ + T Q+
Sbjct: 1576 FESDFDLTKSLGVHTLIENVVSFVSGDVGNAP-GFKEPEESMSTSPQA 1622
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.142 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,970,960
Number of Sequences: 37866
Number of extensions: 431098
Number of successful extensions: 1992
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1934
Number of HSP's gapped (non-prelim): 112
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.